CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 873 & Codon = aaC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3873N873NN1691NsynaaTaaC1976197615336-5338

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3873N873NaaTaaC19761976All0.000378
ORF1ab/nsp3873N873NaaTaaC648648AY.39.10.025669
ORF1ab/nsp3873N873NaaTaaC470470B.1.1.70.000421
ORF1ab/nsp3873N873NaaTaaC9797B.1.20.000854
ORF1ab/nsp3873N873NaaTaaC6868AY.40.000106
ORF1ab/nsp3873N873NaaTaaC4444AY.440.000268
ORF1ab/nsp3873N873NaaTaaC4444B.10.000403
ORF1ab/nsp3873N873NaaTaaC4141AY.250.000247
ORF1ab/nsp3873N873NaaTaaC3939B.1.617.20.000147
ORF1ab/nsp3873N873NaaTaaC3838P.10.000599
ORF1ab/nsp3873N873NaaTaaC3636AY.1030.000224
ORF1ab/nsp3873N873NaaTaaC2727Q.10.003411
ORF1ab/nsp3873N873NaaTaaC2222B.1.2580.001464
ORF1ab/nsp3873N873NaaTaaC2020B.1.10.000363
ORF1ab/nsp3873N873NaaTaaC1818B.1.177.600.003932
ORF1ab/nsp3873N873NaaTaaC1616AY.430.000071
ORF1ab/nsp3873N873NaaTaaC1616B.1.1.2630.024922
ORF1ab/nsp3873N873NaaTaaC1515AY.1060.005023
ORF1ab/nsp3873N873NaaTaaC1313AY.120.004109
ORF1ab/nsp3873N873NaaTaaC1313B.1.1770.000171
ORF1ab/nsp3873N873NaaTaaC1111B.1.5820.005397
ORF1ab/nsp3873N873NaaTaaC1010B.1.2430.000696
ORF1ab/nsp3873N873NaaTaaC1010B.1.4290.000235
ORF1ab/nsp3873N873NaaTaaC99AY.200.00035
ORF1ab/nsp3873N873NaaTaaC99B.1.5960.000784
ORF1ab/nsp3873N873NaaTaaC88AY.540.000763
ORF1ab/nsp3873N873NaaTaaC88B.1.1.3060.003507
ORF1ab/nsp3873N873NaaTaaC77AY.160.002658
ORF1ab/nsp3873N873NaaTaaC77AY.390.000173
ORF1ab/nsp3873N873NaaTaaC77B.1.3110.001922
ORF1ab/nsp3873N873NaaTaaC77B.1.4860.777778
ORF1ab/nsp3873N873NaaTaaC66AY.1000.000276
ORF1ab/nsp3873N873NaaTaaC66AY.1020.000159
ORF1ab/nsp3873N873NaaTaaC66B.1.1.250.003411
ORF1ab/nsp3873N873NaaTaaC66B.1.1.5190.000238
ORF1ab/nsp3873N873NaaTaaC66B.1.1600.000187
ORF1ab/nsp3873N873NaaTaaC66B.1.36.350.015625
ORF1ab/nsp3873N873NaaTaaC66B.1.4040.007812
ORF1ab/nsp3873N873NaaTaaC66B.1.4740.011407
ORF1ab/nsp3873N873NaaTaaC55AY.330.000334
ORF1ab/nsp3873N873NaaTaaC55B.1.3510.000149
ORF1ab/nsp3873N873NaaTaaC55B.400.001821
ORF1ab/nsp3873N873NaaTaaC44AY.30.00004
ORF1ab/nsp3873N873NaaTaaC44AY.300.001583
ORF1ab/nsp3873N873NaaTaaC44AY.470.000124
ORF1ab/nsp3873N873NaaTaaC44B.1.1.2770.003035
ORF1ab/nsp3873N873NaaTaaC44B.1.370.058824
ORF1ab/nsp3873N873NaaTaaC44B.1.5970.018519
ORF1ab/nsp3873N873NaaTaaC44P.1.140.000191
ORF1ab/nsp3873N873NaaTaaC33AY.1190.000106
ORF1ab/nsp3873N873NaaTaaC33AY.420.000121
ORF1ab/nsp3873N873NaaTaaC33AY.98.10.000145
ORF1ab/nsp3873N873NaaTaaC33B.1.1.3480.002389
ORF1ab/nsp3873N873NaaTaaC33B.1.2210.000213
ORF1ab/nsp3873N873NaaTaaC33B.1.5260.000071
ORF1ab/nsp3873N873NaaTaaC33C.370.000348
ORF1ab/nsp3873N873NaaTaaC33P.1.170.000485
ORF1ab/nsp3873N873NaaTaaC22AY.140.000176
ORF1ab/nsp3873N873NaaTaaC22AY.4.40.000818
ORF1ab/nsp3873N873NaaTaaC22AY.450.000243
ORF1ab/nsp3873N873NaaTaaC22AY.50.000041
ORF1ab/nsp3873N873NaaTaaC22AY.610.00021
ORF1ab/nsp3873N873NaaTaaC22AY.750.000112
ORF1ab/nsp3873N873NaaTaaC22AY.980.000158
ORF1ab/nsp3873N873NaaTaaC22B.1.1.3370.007194
ORF1ab/nsp3873N873NaaTaaC22B.1.177.120.000303
ORF1ab/nsp3873N873NaaTaaC22B.1.3490.00143
ORF1ab/nsp3873N873NaaTaaC22B.1.36.290.001035
ORF1ab/nsp3873N873NaaTaaC22B.1.3610.002577
ORF1ab/nsp3873N873NaaTaaC22B.1.4990.002101
ORF1ab/nsp3873N873NaaTaaC22B.1.5250.000226
ORF1ab/nsp3873N873NaaTaaC22B.1.6120.005305
ORF1ab/nsp3873N873NaaTaaC22B.1.617.10.000258
ORF1ab/nsp3873N873NaaTaaC22D.20.00015
ORF1ab/nsp3873N873NaaTaaC22Q.60.013245
ORF1ab/nsp3873N873NaaTaaC11AY.1080.001103
ORF1ab/nsp3873N873NaaTaaC11AY.1200.000037
ORF1ab/nsp3873N873NaaTaaC11AY.130.000161
ORF1ab/nsp3873N873NaaTaaC11AY.230.00007
ORF1ab/nsp3873N873NaaTaaC11AY.260.000028
ORF1ab/nsp3873N873NaaTaaC11AY.290.000016
ORF1ab/nsp3873N873NaaTaaC11AY.46.60.000072
ORF1ab/nsp3873N873NaaTaaC11AY.590.00053
ORF1ab/nsp3873N873NaaTaaC11AY.620.000436
ORF1ab/nsp3873N873NaaTaaC11AY.760.004831
ORF1ab/nsp3873N873NaaTaaC11AY.770.001127
ORF1ab/nsp3873N873NaaTaaC11AY.830.001724
ORF1ab/nsp3873N873NaaTaaC11AY.850.000427
ORF1ab/nsp3873N873NaaTaaC11AY.890.004902
ORF1ab/nsp3873N873NaaTaaC11AY.990.001049
ORF1ab/nsp3873N873NaaTaaC11B0.000128
ORF1ab/nsp3873N873NaaTaaC11B.1.1.1640.005155
ORF1ab/nsp3873N873NaaTaaC11B.1.1.2220.000204
ORF1ab/nsp3873N873NaaTaaC11B.1.1.2270.004348
ORF1ab/nsp3873N873NaaTaaC11B.1.1.2650.003155
ORF1ab/nsp3873N873NaaTaaC11B.1.1.330.000421
ORF1ab/nsp3873N873NaaTaaC11B.1.1.3760.005952
ORF1ab/nsp3873N873NaaTaaC11B.1.1.3770.001381
ORF1ab/nsp3873N873NaaTaaC11B.1.1.390.00051
ORF1ab/nsp3873N873NaaTaaC11B.1.177.530.002392
ORF1ab/nsp3873N873NaaTaaC11B.1.177.70.000165
ORF1ab/nsp3873N873NaaTaaC11B.1.177.760.002494
ORF1ab/nsp3873N873NaaTaaC11B.1.2400.000216
ORF1ab/nsp3873N873NaaTaaC11B.1.258.110.000396
ORF1ab/nsp3873N873NaaTaaC11B.1.258.140.00098
ORF1ab/nsp3873N873NaaTaaC11B.1.258.170.000104
ORF1ab/nsp3873N873NaaTaaC11B.1.258.70.001912
ORF1ab/nsp3873N873NaaTaaC11B.1.3360.002439
ORF1ab/nsp3873N873NaaTaaC11B.1.3460.001311
ORF1ab/nsp3873N873NaaTaaC11B.1.360.000146
ORF1ab/nsp3873N873NaaTaaC11B.1.36.160.001425
ORF1ab/nsp3873N873NaaTaaC11B.1.3690.000285
ORF1ab/nsp3873N873NaaTaaC11B.1.4270.00005
ORF1ab/nsp3873N873NaaTaaC11B.1.438.10.000107
ORF1ab/nsp3873N873NaaTaaC11B.1.466.20.000391
ORF1ab/nsp3873N873NaaTaaC11B.1.5240.001406
ORF1ab/nsp3873N873NaaTaaC11B.1.5380.008065
ORF1ab/nsp3873N873NaaTaaC11B.1.5800.004065
ORF1ab/nsp3873N873NaaTaaC11B.1.5900.004545
ORF1ab/nsp3873N873NaaTaaC11B.1.5950.000261
ORF1ab/nsp3873N873NaaTaaC11B.1.6210.000089
ORF1ab/nsp3873N873NaaTaaC11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.