CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 864

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3864T864IT1682InonsynaCaaTa963296280.9995855309-5311
ORF1ab/nsp3864T864IT1682InonsynaCAaTT963240.0004152825309-5311
ORF1ab/nsp3864T864AT1682AnonsynAcaGca34934915309-5311
ORF1ab/nsp3864T864TT1682TsynacAacG2592290.884175309-5311
ORF1ab/nsp3864T864TT1682TsynacAacT259170.06563715309-5311
ORF1ab/nsp3864T864TT1682TsynacAacC259130.0501935309-5311
ORF1ab/nsp3864T864delT1682deldelACA---585815309-5311
ORF1ab/nsp3864T864KT1682KnonsynaCaaAa363615309-5311
ORF1ab/nsp3864T864NT1682NnonsynaCAaAT191915309-5311
ORF1ab/nsp3864T864ST1682SnonsynAcaTca740.5714295309-5311
ORF1ab/nsp3864T864ST1682SnonsynAcATcT730.4285715309-5311
ORF1ab/nsp3864T864PT1682PnonsynAcaCca3315309-5311
ORF1ab/nsp3864T864LT1682LnonsynACaTTa2215309-5311
ORF1ab/nsp3864T864FT1682FnonsynACATTT2215309-5311
ORF1ab/nsp3864T864YT1682YnonsynACATAT2215309-5311
ORF1ab/nsp3864T864del2T1682del2delACa--a2215309-5311
ORF1ab/nsp3864T864XT1682XnonsynACaTAa2215309-5311
ORF1ab/nsp3864T864MT1682MnonsynaCAaTG1115309-5311

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3864T864IaCaaTa96289632All0.001841
ORF1ab/nsp3864T864IaCAaTT49632All0.000001
ORF1ab/nsp3864T864IaCaaTa42424246B.1.1.70.003798
ORF1ab/nsp3864T864IaCAaTT44246B.1.1.70.000004
ORF1ab/nsp3864T864IaCaaTa13301330AY.40.00207
ORF1ab/nsp3864T864IaCaaTa587587B.1.2430.040846
ORF1ab/nsp3864T864AAcaGca349349All0.000067
ORF1ab/nsp3864T864IaCaaTa276276AY.250.00166
ORF1ab/nsp3864T864TacAacG229259All0.000044
ORF1ab/nsp3864T864TacAacT17259All0.000003
ORF1ab/nsp3864T864TacAacC13259All0.000002
ORF1ab/nsp3864T864IaCaaTa215215AY.1200.007993
ORF1ab/nsp3864T864AAcaGca194194B.1.1.70.000174
ORF1ab/nsp3864T864IaCaaTa184184B.1.617.20.000693
ORF1ab/nsp3864T864IaCaaTa159159B.1.20.0014
ORF1ab/nsp3864T864IaCaaTa155155AY.30.001542
ORF1ab/nsp3864T864IaCaaTa144144B.1.2650.182973
ORF1ab/nsp3864T864IaCaaTa114114B.10.001044
ORF1ab/nsp3864T864IaCaaTa8888AY.1030.000546
ORF1ab/nsp3864T864IaCaaTa8585P.10.001339
ORF1ab/nsp3864T864IaCaaTa8282AY.430.000363
ORF1ab/nsp3864T864IaCaaTa8282P.1.100.022096
ORF1ab/nsp3864T864TacAacG7980B.1.2430.005497
ORF1ab/nsp3864T864TacAacC180B.1.2430.00007
ORF1ab/nsp3864T864IaCaaTa6666AY.440.000402
ORF1ab/nsp3864T864IaCaaTa6565B.1.6020.424837
ORF1ab/nsp3864T864IaCaaTa6262AY.4.2.10.009237
ORF1ab/nsp3864T864IaCaaTa6060AY.4.50.00645
ORF1ab/nsp3864T864IaCaaTa5959AY.46.40.009706
ORF1ab/nsp3864T864delACA---5858All0.000011
ORF1ab/nsp3864T864IaCaaTa5555B.1.10.000998
ORF1ab/nsp3864T864IaCaaTa5050B.1.2340.006597
ORF1ab/nsp3864T864IaCaaTa5050B.1.4270.002525
ORF1ab/nsp3864T864IaCaaTa4949Q.80.00808
ORF1ab/nsp3864T864IaCaaTa4646AY.390.001137
ORF1ab/nsp3864T864IaCaaTa4343B.1.3041
ORF1ab/nsp3864T864IaCaaTa4040B.1.1770.000527
ORF1ab/nsp3864T864IaCaaTa3838AY.1020.001008
ORF1ab/nsp3864T864IaCaaTa3838AY.60.001563
ORF1ab/nsp3864T864KaCaaAa3636All0.000007
ORF1ab/nsp3864T864IaCaaTa3636B.280.118033
ORF1ab/nsp3864T864IaCaaTa3535B.1.2580.002329
ORF1ab/nsp3864T864IaCaaTa3434B.1.4290.0008
ORF1ab/nsp3864T864IaCaaTa3434B.1.6210.00301
ORF1ab/nsp3864T864IaCaaTa3333AY.50.000681
ORF1ab/nsp3864T864IaCaaTa3232AY.3.10.002728
ORF1ab/nsp3864T864IaCaaTa3232AY.420.001287
ORF1ab/nsp3864T864TacAacG3232B.1.1.3521
ORF1ab/nsp3864T864KaCaaAa3232B.1.1.70.000029
ORF1ab/nsp3864T864IaCaaTa3232B.1.3990.061896
ORF1ab/nsp3864T864IaCaaTa3131AY.1190.001095
ORF1ab/nsp3864T864IaCaaTa2727B.1.3110.007414
ORF1ab/nsp3864T864IaCaaTa2727B.1.438.10.002896
ORF1ab/nsp3864T864IaCaaTa2626B.1.1.4200.026157
ORF1ab/nsp3864T864IaCaaTa2323B.1.1600.000717
ORF1ab/nsp3864T864IaCaaTa2222AY.200.000855
ORF1ab/nsp3864T864TacAacG1022B.1.1.70.000009
ORF1ab/nsp3864T864TacAacT922B.1.1.70.000008
ORF1ab/nsp3864T864TacAacC322B.1.1.70.000003
ORF1ab/nsp3864T864AAcaGca2222B.1.2340.002903
ORF1ab/nsp3864T864AAcaGca2121B.10.000192
ORF1ab/nsp3864T864TacAacG2020AY.250.00012
ORF1ab/nsp3864T864NaCAaAT1919All0.000004
ORF1ab/nsp3864T864delACA---1919B.1.1.70.000017
ORF1ab/nsp3864T864AAcaGca1818AY.30.000179
ORF1ab/nsp3864T864AAcaGca1818AY.440.00011
ORF1ab/nsp3864T864IaCaaTa1818AY.98.10.000872
ORF1ab/nsp3864T864IaCaaTa1616B.1.1.2160.014248
ORF1ab/nsp3864T864IaCaaTa1616B.1.360.002334
ORF1ab/nsp3864T864IaCaaTa1616B.1.5950.004175
ORF1ab/nsp3864T864IaCaaTa1515AY.99.20.001382
ORF1ab/nsp3864T864IaCaaTa1515B.1.6280.005285
ORF1ab/nsp3864T864IaCaaTa1414AY.750.000784
ORF1ab/nsp3864T864IaCaaTa1414B.1.3510.000416
ORF1ab/nsp3864T864IaCaaTa1313AY.230.000907
ORF1ab/nsp3864T864IaCaaTa1313AY.330.000868
ORF1ab/nsp3864T864IaCaaTa1313AY.340.001261
ORF1ab/nsp3864T864IaCaaTa1313AY.80.007879
ORF1ab/nsp3864T864TacAacG1213B.1.10.000218
ORF1ab/nsp3864T864TacAacC113B.1.10.000018
ORF1ab/nsp3864T864TacAacG1012B.10.000092
ORF1ab/nsp3864T864TacAacT112B.10.000009
ORF1ab/nsp3864T864TacAacC112B.10.000009
ORF1ab/nsp3864T864IaCaaTa1212B.1.5260.000282
ORF1ab/nsp3864T864TacAacG1112P.10.000173
ORF1ab/nsp3864T864TacAacT112P.10.000016
ORF1ab/nsp3864T864IaCaaTa1111B.1.177.460.010101
ORF1ab/nsp3864T864IaCaaTa1111B.1.5250.001245
ORF1ab/nsp3864T864AAcaGca1111B.1.617.10.001419
ORF1ab/nsp3864T864IaCaaTa1010AY.1000.00046
ORF1ab/nsp3864T864IaCaaTa1010Q.30.00145
ORF1ab/nsp3864T864IaCaaTa99AY.120.2.10.004484
ORF1ab/nsp3864T864IaCaaTa99AY.770.010147
ORF1ab/nsp3864T864IaCaaTa99B.1.1.2140.000499
ORF1ab/nsp3864T864IaCaaTa99B.1.1.3060.003946
ORF1ab/nsp3864T864TacAacG99B.1.5960.000784
ORF1ab/nsp3864T864IaCaaTa99B.1.6270.018182
ORF1ab/nsp3864T864IaCaaTa99C.370.001045
ORF1ab/nsp3864T864IaCaaTa99V.10.204545
ORF1ab/nsp3864T864IaCaaTa88AY.300.003166
ORF1ab/nsp3864T864NaCAaAT88AY.610.000838
ORF1ab/nsp3864T864IaCaaTa88B.1.1.330.003367
ORF1ab/nsp3864T864IaCaaTa88B.1.1.5190.000318
ORF1ab/nsp3864T864IaCaaTa88B.1.4000.003432
ORF1ab/nsp3864T864SAcaTca47All0.000001
ORF1ab/nsp3864T864SAcATcT37All0.000001
ORF1ab/nsp3864T864IaCaaTa77AY.270.000453
ORF1ab/nsp3864T864AAcaGca77AY.40.000011
ORF1ab/nsp3864T864IaCaaTa77AY.4.20.000152
ORF1ab/nsp3864T864SAcaTca47B.1.1.70.000004
ORF1ab/nsp3864T864SAcATcT37B.1.1.70.000003
ORF1ab/nsp3864T864IaCaaTa77B.1.5240.009845
ORF1ab/nsp3864T864IaCaaTa77B.1.6360.04698
ORF1ab/nsp3864T864IaCaaTa77D.20.000525
ORF1ab/nsp3864T864IaCaaTa77P.1.70.002235
ORF1ab/nsp3864T864IaCaaTa66AY.260.00017
ORF1ab/nsp3864T864TacAacG66AY.30.00006
ORF1ab/nsp3864T864TacAacC66B.1.177.810.001136
ORF1ab/nsp3864T864AAcaGca66B.1.20.000053
ORF1ab/nsp3864T864IaCaaTa66B.1.2210.000426
ORF1ab/nsp3864T864IaCaaTa66B.1.3240.009631
ORF1ab/nsp3864T864IaCaaTa66B.1.6090.002876
ORF1ab/nsp3864T864IaCaaTa66B.1.621.10.003035
ORF1ab/nsp3864T864IaCaaTa66B.1.6230.003219
ORF1ab/nsp3864T864IaCaaTa55AY.1140.001156
ORF1ab/nsp3864T864IaCaaTa55AY.1180.000313
ORF1ab/nsp3864T864IaCaaTa55AY.140.00044
ORF1ab/nsp3864T864IaCaaTa55AY.290.000079
ORF1ab/nsp3864T864IaCaaTa55AY.39.10.000198
ORF1ab/nsp3864T864IaCaaTa55AY.90.000338
ORF1ab/nsp3864T864TacAacG55B.1.1.2140.000277
ORF1ab/nsp3864T864IaCaaTa55B.1.1.280.001556
ORF1ab/nsp3864T864IaCaaTa55B.1.1.4160.004525
ORF1ab/nsp3864T864NaCAaAT55B.1.617.20.000019
ORF1ab/nsp3864T864IaCaaTa55P.1.140.000239
ORF1ab/nsp3864T864IaCaaTa44AY.1210.000541
ORF1ab/nsp3864T864IaCaaTa44AY.130.000644
ORF1ab/nsp3864T864TacAacG44AY.3.10.000341
ORF1ab/nsp3864T864IaCaaTa44AY.360.000593
ORF1ab/nsp3864T864delACA---44AY.40.000006
ORF1ab/nsp3864T864IaCaaTa44AY.46.60.000289
ORF1ab/nsp3864T864IaCaaTa44AY.75.10.000721
ORF1ab/nsp3864T864IaCaaTa44B0.000511
ORF1ab/nsp3864T864AAcaGca44B.1.1.2310.012384
ORF1ab/nsp3864T864NaCAaAT44B.1.1.70.000004
ORF1ab/nsp3864T864TacAacG44B.1.1.830.01084
ORF1ab/nsp3864T864IaCaaTa44B.1.1390.002933
ORF1ab/nsp3864T864TacAacG44B.1.3510.000119
ORF1ab/nsp3864T864IaCaaTa44B.1.3690.001141
ORF1ab/nsp3864T864IaCaaTa44B.1.4090.003125
ORF1ab/nsp3864T864IaCaaTa44B.1.4210.029851
ORF1ab/nsp3864T864IaCaaTa44B.1.5770.002749
ORF1ab/nsp3864T864IaCaaTa44B.1.5960.000349
ORF1ab/nsp3864T864AAcaGca44B.1.617.20.000015
ORF1ab/nsp3864T864AAcaGca44C.1.20.017021
ORF1ab/nsp3864T864IaCaaTa44P.20.000747
ORF1ab/nsp3864T864IaCaaTa44Q.10.000505
ORF1ab/nsp3864T864IaCaaTa33A0.001161
ORF1ab/nsp3864T864IaCaaTa33A.2.50.001497
ORF1ab/nsp3864T864PAcaCca33All0.000001
ORF1ab/nsp3864T864IaCaaTa33AW.10.009146
ORF1ab/nsp3864T864IaCaaTa33AY.1110.000549
ORF1ab/nsp3864T864IaCaaTa33AY.1160.00086
ORF1ab/nsp3864T864IaCaaTa33AY.1170.000254
ORF1ab/nsp3864T864AAcaGca33AY.320.001597
ORF1ab/nsp3864T864IaCaaTa33AY.410.000882
ORF1ab/nsp3864T864TacAacG23AY.440.000012
ORF1ab/nsp3864T864TacAacT13AY.440.000006
ORF1ab/nsp3864T864IaCaaTa33AY.450.000365
ORF1ab/nsp3864T864IaCaaTa33AY.9.10.000251
ORF1ab/nsp3864T864delACA---33B.10.000027
ORF1ab/nsp3864T864IaCaaTa33B.1.1.2220.000612
ORF1ab/nsp3864T864AAcaGca33B.1.1770.00004
ORF1ab/nsp3864T864IaCaaTa33B.1.177.210.000229
ORF1ab/nsp3864T864IaCaaTa33B.1.177.480.009375
ORF1ab/nsp3864T864IaCaaTa33B.1.177.860.00055
ORF1ab/nsp3864T864AAcaGca33B.1.258.140.002941
ORF1ab/nsp3864T864IaCaaTa33B.1.2980.006342
ORF1ab/nsp3864T864IaCaaTa33B.1.4700.004213
ORF1ab/nsp3864T864IaCaaTa33B.1.5610.001191
ORF1ab/nsp3864T864IaCaaTa33B.1.5920.12
ORF1ab/nsp3864T864TacAacG33B.1.617.20.000011
ORF1ab/nsp3864T864IaCaaTa33B.1.6370.000219
ORF1ab/nsp3864T864IaCaaTa33C.160.003181
ORF1ab/nsp3864T864IaCaaTa33L.20.034091
ORF1ab/nsp3864T864AAcaGca33P.10.000047
ORF1ab/nsp3864T864IaCaaTa33P.1.150.000697
ORF1ab/nsp3864T864IaCaaTa33P.1.160.001122
ORF1ab/nsp3864T864IaCaaTa33R.10.00027
ORF1ab/nsp3864T864delACA---220.111111
ORF1ab/nsp3864T864del2ACa--a22All0
ORF1ab/nsp3864T864FACATTT22All0
ORF1ab/nsp3864T864LACaTTa22All0
ORF1ab/nsp3864T864XACaTAa22All0
ORF1ab/nsp3864T864YACATAT22All0
ORF1ab/nsp3864T864TacAacG22AY.1020.000053
ORF1ab/nsp3864T864AAcaGca22AY.1030.000012
ORF1ab/nsp3864T864IaCaaTa22AY.1130.000285
ORF1ab/nsp3864T864IaCaaTa22AY.120.20.002571
ORF1ab/nsp3864T864IaCaaTa22AY.240.000862
ORF1ab/nsp3864T864AAcaGca22AY.250.000012
ORF1ab/nsp3864T864IaCaaTa22AY.34.10.00102
ORF1ab/nsp3864T864AAcaGca22AY.430.000009
ORF1ab/nsp3864T864delACA---22AY.430.000009
ORF1ab/nsp3864T864IaCaaTa22AY.460.000208
ORF1ab/nsp3864T864IaCaaTa22AY.46.50.000397
ORF1ab/nsp3864T864IaCaaTa22AY.470.000062
ORF1ab/nsp3864T864TacAacG22AY.50.000041
ORF1ab/nsp3864T864IaCaaTa22AY.520.001629
ORF1ab/nsp3864T864IaCaaTa22AY.580.001815
ORF1ab/nsp3864T864IaCaaTa22AY.700.000417
ORF1ab/nsp3864T864IaCaaTa22AY.850.000854
ORF1ab/nsp3864T864IaCaaTa22AY.870.001665
ORF1ab/nsp3864T864IaCaaTa22AY.9.20.000073
ORF1ab/nsp3864T864IaCaaTa22AY.950.001522
ORF1ab/nsp3864T864KaCaaAa22B.1.10.000036
ORF1ab/nsp3864T864IaCaaTa22B.1.1.2100.011429
ORF1ab/nsp3864T864IaCaaTa22B.1.1.2840.000215
ORF1ab/nsp3864T864IaCaaTa22B.1.1.3720.001377
ORF1ab/nsp3864T864IaCaaTa22B.1.1.390.001019
ORF1ab/nsp3864T864TacAacG22B.1.1.4200.002012
ORF1ab/nsp3864T864IaCaaTa22B.1.1.4340.000697
ORF1ab/nsp3864T864IaCaaTa22B.1.1.500.001358
ORF1ab/nsp3864T864IaCaaTa22B.1.1.5230.003125
ORF1ab/nsp3864T864IaCaaTa22B.1.1.630.000772
ORF1ab/nsp3864T864FACATTT22B.1.1.70.000002
ORF1ab/nsp3864T864LACaTTa22B.1.1.70.000002
ORF1ab/nsp3864T864YACATAT22B.1.1.70.000002
ORF1ab/nsp3864T864XACaTAa22B.1.1.70.000002
ORF1ab/nsp3864T864IaCaaTa22B.1.110.30.001437
ORF1ab/nsp3864T864IaCaaTa22B.1.177.600.000437
ORF1ab/nsp3864T864IaCaaTa22B.1.177.770.001452
ORF1ab/nsp3864T864IaCaaTa22B.1.177.810.000379
ORF1ab/nsp3864T864delACA---22B.1.360.000292
ORF1ab/nsp3864T864IaCaaTa22B.1.36.160.002849
ORF1ab/nsp3864T864IaCaaTa22B.1.36.180.00084
ORF1ab/nsp3864T864IaCaaTa22B.1.36.290.001035
ORF1ab/nsp3864T864IaCaaTa22B.1.36.80.002
ORF1ab/nsp3864T864IaCaaTa22B.1.4320.022472
ORF1ab/nsp3864T864IaCaaTa22B.1.5010.014706
ORF1ab/nsp3864T864AAcaGca22B.1.5250.000226
ORF1ab/nsp3864T864IaCaaTa22B.1.5450.028986
ORF1ab/nsp3864T864IaCaaTa22B.1.5640.000852
ORF1ab/nsp3864T864IaCaaTa22B.1.5650.001621
ORF1ab/nsp3864T864IaCaaTa22B.1.5740.004301
ORF1ab/nsp3864T864delACA---22B.1.617.20.000008
ORF1ab/nsp3864T864IaCaaTa22B.290.007018
ORF1ab/nsp3864T864IaCaaTa22B.400.000729
ORF1ab/nsp3864T864IaCaaTa22Q.40.00091
ORF1ab/nsp3864T864PAcaCca11A0.000387
ORF1ab/nsp3864T864TacAacT11A0.000387
ORF1ab/nsp3864T864AAcaGca11A0.000387
ORF1ab/nsp3864T864delACA---11A.2.20.001689
ORF1ab/nsp3864T864IaCaaTa11A.210.00277
ORF1ab/nsp3864T864delACA---11AH.30.003802
ORF1ab/nsp3864T864MaCAaTG11All0
ORF1ab/nsp3864T864IaCaaTa11AU.30.00211
ORF1ab/nsp3864T864IaCaaTa11AY.10.000396
ORF1ab/nsp3864T864IaCaaTa11AY.1010.00049
ORF1ab/nsp3864T864IaCaaTa11AY.1060.000335
ORF1ab/nsp3864T864delACA---11AY.1080.001103
ORF1ab/nsp3864T864IaCaaTa11AY.1080.001103
ORF1ab/nsp3864T864TacAacT11AY.1090.00074
ORF1ab/nsp3864T864IaCaaTa11AY.1090.00074
ORF1ab/nsp3864T864NaCAaAT11AY.1180.000063
ORF1ab/nsp3864T864AAcaGca11AY.1190.000035
ORF1ab/nsp3864T864IaCaaTa11AY.120.000316
ORF1ab/nsp3864T864delACA---11AY.1200.000037
ORF1ab/nsp3864T864AAcaGca11AY.1200.000037
ORF1ab/nsp3864T864TacAacG11AY.140.000088
ORF1ab/nsp3864T864AAcaGca11AY.200.000039
ORF1ab/nsp3864T864AAcaGca11AY.230.00007
ORF1ab/nsp3864T864TacAacT11AY.260.000028
ORF1ab/nsp3864T864AAcaGca11AY.260.000028
ORF1ab/nsp3864T864AAcaGca11AY.3.10.000085
ORF1ab/nsp3864T864TacAacG11AY.340.000097
ORF1ab/nsp3864T864IaCaaTa11AY.370.000316
ORF1ab/nsp3864T864TacAacG11AY.380.000499
ORF1ab/nsp3864T864delACA---11AY.390.000025
ORF1ab/nsp3864T864AAcaGca11AY.390.000025
ORF1ab/nsp3864T864TacAacT11AY.40.000002
ORF1ab/nsp3864T864TacAacG11AY.4.20.000022
ORF1ab/nsp3864T864AAcaGca11AY.4.20.000022
ORF1ab/nsp3864T864MaCAaTG11AY.4.2.10.000149
ORF1ab/nsp3864T864IaCaaTa11AY.4.30.000842
ORF1ab/nsp3864T864IaCaaTa11AY.46.20.000635
ORF1ab/nsp3864T864AAcaGca11AY.470.000031
ORF1ab/nsp3864T864AAcaGca11AY.50.000021
ORF1ab/nsp3864T864IaCaaTa11AY.540.000095
ORF1ab/nsp3864T864IaCaaTa11AY.610.000105
ORF1ab/nsp3864T864IaCaaTa11AY.620.000436
ORF1ab/nsp3864T864IaCaaTa11AY.650.000533
ORF1ab/nsp3864T864delACA---11AY.660.00107
ORF1ab/nsp3864T864IaCaaTa11AY.670.000464
ORF1ab/nsp3864T864IaCaaTa11AY.680.000274
ORF1ab/nsp3864T864IaCaaTa11AY.7.10.000113
ORF1ab/nsp3864T864IaCaaTa11AY.710.000475
ORF1ab/nsp3864T864TacAacG11AY.750.000056
ORF1ab/nsp3864T864delACA---11AY.750.000056
ORF1ab/nsp3864T864IaCaaTa11AY.790.001211
ORF1ab/nsp3864T864IaCaaTa11AY.800.001129
ORF1ab/nsp3864T864AAcaGca11AY.9.20.000037
ORF1ab/nsp3864T864IaCaaTa11AY.980.000079
ORF1ab/nsp3864T864PAcaCca11B.10.000009
ORF1ab/nsp3864T864delACA---11B.1.10.000018
ORF1ab/nsp3864T864AAcaGca11B.1.1.10.000327
ORF1ab/nsp3864T864delACA---11B.1.1.10.000327
ORF1ab/nsp3864T864IaCaaTa11B.1.1.1110.014706
ORF1ab/nsp3864T864IaCaaTa11B.1.1.1210.002427
ORF1ab/nsp3864T864delACA---11B.1.1.1420.017544
ORF1ab/nsp3864T864IaCaaTa11B.1.1.1760.000439
ORF1ab/nsp3864T864IaCaaTa11B.1.1.1860.003436
ORF1ab/nsp3864T864IaCaaTa11B.1.1.2300.009174
ORF1ab/nsp3864T864IaCaaTa11B.1.1.2320.001815
ORF1ab/nsp3864T864IaCaaTa11B.1.1.2410.00207
ORF1ab/nsp3864T864AAcaGca11B.1.1.250.000569
ORF1ab/nsp3864T864IaCaaTa11B.1.1.250.000569
ORF1ab/nsp3864T864IaCaaTa11B.1.1.2630.001558
ORF1ab/nsp3864T864IaCaaTa11B.1.1.2690.001353
ORF1ab/nsp3864T864TacAacG11B.1.1.270.00565
ORF1ab/nsp3864T864IaCaaTa11B.1.1.2750.011236
ORF1ab/nsp3864T864IaCaaTa11B.1.1.2790.001121
ORF1ab/nsp3864T864IaCaaTa11B.1.1.2940.001266
ORF1ab/nsp3864T864TacAacG11B.1.1.3060.000438
ORF1ab/nsp3864T864IaCaaTa11B.1.1.3110.000358
ORF1ab/nsp3864T864IaCaaTa11B.1.1.3120.001912
ORF1ab/nsp3864T864IaCaaTa11B.1.1.3170.000412
ORF1ab/nsp3864T864IaCaaTa11B.1.1.3590.027778
ORF1ab/nsp3864T864IaCaaTa11B.1.1.3690.000446
ORF1ab/nsp3864T864IaCaaTa11B.1.1.370.000193
ORF1ab/nsp3864T864IaCaaTa11B.1.1.3980.003226
ORF1ab/nsp3864T864IaCaaTa11B.1.1.4020.011111
ORF1ab/nsp3864T864delACA---11B.1.1.4200.001006
ORF1ab/nsp3864T864IaCaaTa11B.1.1.4320.001266
ORF1ab/nsp3864T864del2ACa--a11B.1.1.5190.00004
ORF1ab/nsp3864T864TacAacG11B.1.1.5260.003546
ORF1ab/nsp3864T864PAcaCca11B.1.1.70.000001
ORF1ab/nsp3864T864del2ACa--a11B.1.1.70.000001
ORF1ab/nsp3864T864IaCaaTa11B.1.1.700.000341
ORF1ab/nsp3864T864AAcaGca11B.1.1.830.00271
ORF1ab/nsp3864T864IaCaaTa11B.1.1100.004525
ORF1ab/nsp3864T864IaCaaTa11B.1.1310.008772
ORF1ab/nsp3864T864IaCaaTa11B.1.1470.000756
ORF1ab/nsp3864T864IaCaaTa11B.1.160.180.007299
ORF1ab/nsp3864T864delACA---11B.1.1770.000013
ORF1ab/nsp3864T864TacAacG11B.1.1770.000013
ORF1ab/nsp3864T864KaCaaAa11B.1.1770.000013
ORF1ab/nsp3864T864IaCaaTa11B.1.177.160.000664
ORF1ab/nsp3864T864delACA---11B.1.177.160.000664
ORF1ab/nsp3864T864delACA---11B.1.177.170.000821
ORF1ab/nsp3864T864IaCaaTa11B.1.177.180.00116
ORF1ab/nsp3864T864delACA---11B.1.177.180.00116
ORF1ab/nsp3864T864IaCaaTa11B.1.177.330.001645
ORF1ab/nsp3864T864IaCaaTa11B.1.177.500.004695
ORF1ab/nsp3864T864IaCaaTa11B.1.177.540.000606
ORF1ab/nsp3864T864delACA---11B.1.177.570.000281
ORF1ab/nsp3864T864delACA---11B.1.177.70.000165
ORF1ab/nsp3864T864IaCaaTa11B.1.177.70.000165
ORF1ab/nsp3864T864delACA---11B.1.177.760.002494
ORF1ab/nsp3864T864IaCaaTa11B.1.177.840.006667
ORF1ab/nsp3864T864IaCaaTa11B.1.177.870.000728
ORF1ab/nsp3864T864AAcaGca11B.1.214.20.0006
ORF1ab/nsp3864T864IaCaaTa11B.1.2470.014925
ORF1ab/nsp3864T864TacAacG11B.1.2580.000067
ORF1ab/nsp3864T864IaCaaTa11B.1.258.120.007874
ORF1ab/nsp3864T864IaCaaTa11B.1.2930.0125
ORF1ab/nsp3864T864delACA---11B.1.3190.003049
ORF1ab/nsp3864T864IaCaaTa11B.1.3440.008197
ORF1ab/nsp3864T864IaCaaTa11B.1.3490.000715
ORF1ab/nsp3864T864IaCaaTa11B.1.36.170.000494
ORF1ab/nsp3864T864IaCaaTa11B.1.36.250.002208
ORF1ab/nsp3864T864IaCaaTa11B.1.36.70.004
ORF1ab/nsp3864T864IaCaaTa11B.1.36.90.003215
ORF1ab/nsp3864T864IaCaaTa11B.1.362.20.004717
ORF1ab/nsp3864T864IaCaaTa11B.1.3670.000792
ORF1ab/nsp3864T864IaCaaTa11B.1.3800.006623
ORF1ab/nsp3864T864delACA---11B.1.416.10.001563
ORF1ab/nsp3864T864IaCaaTa11B.1.4280.00102
ORF1ab/nsp3864T864AAcaGca11B.1.438.10.000107
ORF1ab/nsp3864T864IaCaaTa11B.1.4530.003236
ORF1ab/nsp3864T864AAcaGca11B.1.5260.000024
ORF1ab/nsp3864T864IaCaaTa11B.1.5410.004425
ORF1ab/nsp3864T864IaCaaTa11B.1.5750.000303
ORF1ab/nsp3864T864TacAacT11B.1.5770.000687
ORF1ab/nsp3864T864IaCaaTa11B.1.5800.004065
ORF1ab/nsp3864T864IaCaaTa11B.1.5820.000491
ORF1ab/nsp3864T864IaCaaTa11B.1.5880.00091
ORF1ab/nsp3864T864IaCaaTa11B.1.617.10.000129
ORF1ab/nsp3864T864IaCaaTa11B.1.6180.004032
ORF1ab/nsp3864T864IaCaaTa11B.1.6190.000871
ORF1ab/nsp3864T864delACA---11B.1.6210.000089
ORF1ab/nsp3864T864delACA---11B.1.6300.005236
ORF1ab/nsp3864T864IaCaaTa11B.1.6390.021739
ORF1ab/nsp3864T864IaCaaTa11B.1.760.011364
ORF1ab/nsp3864T864delACA---11B.150.017544
ORF1ab/nsp3864T864AAcaGca11B.30.000831
ORF1ab/nsp3864T864IaCaaTa11B.40.002208
ORF1ab/nsp3864T864IaCaaTa11C.170.055556
ORF1ab/nsp3864T864IaCaaTa11C.300.001727
ORF1ab/nsp3864T864AAcaGca11C.36.3.10.002717
ORF1ab/nsp3864T864TacAacC11D.20.000075
ORF1ab/nsp3864T864IaCaaTa11N.40.004255
ORF1ab/nsp3864T864NaCAaAT11P.10.000016
ORF1ab/nsp3864T864KaCaaAa11P.10.000016
ORF1ab/nsp3864T864IaCaaTa11P.1.120.000484
ORF1ab/nsp3864T864TacAacG11P.1.120.000484
ORF1ab/nsp3864T864IaCaaTa11P.1.130.000898
ORF1ab/nsp3864T864TacAacG11P.1.170.000162
ORF1ab/nsp3864T864IaCaaTa11P.1.80.004785
ORF1ab/nsp3864T864IaCaaTa11Q.60.006623
ORF1ab/nsp3864T864delACA---11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.