CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 862 | L862L | L1680L | syn | ttG | ttA | 2836 | 2632 | 0.928068 | 5303-5305 |
ORF1ab/nsp3 | 862 | L862L | L1680L | syn | Ttg | Ctg | 2836 | 204 | 0.0719323 | 5303-5305 |
ORF1ab/nsp3 | 862 | L862F | L1680F | nonsyn | ttG | ttT | 1101 | 888 | 0.80654 | 5303-5305 |
ORF1ab/nsp3 | 862 | L862F | L1680F | nonsyn | ttG | ttC | 1101 | 213 | 0.19346 | 5303-5305 |
ORF1ab/nsp3 | 862 | L862del | L1680del | del | TTG | --- | 67 | 67 | 1 | 5303-5305 |
ORF1ab/nsp3 | 862 | L862M | L1680M | nonsyn | Ttg | Atg | 27 | 27 | 1 | 5303-5305 |
ORF1ab/nsp3 | 862 | L862I | L1680I | nonsyn | TtG | AtT | 24 | 15 | 0.625 | 5303-5305 |
ORF1ab/nsp3 | 862 | L862I | L1680I | nonsyn | TtG | AtA | 24 | 9 | 0.375 | 5303-5305 |
ORF1ab/nsp3 | 862 | L862V | L1680V | nonsyn | Ttg | Gtg | 18 | 17 | 0.944444 | 5303-5305 |
ORF1ab/nsp3 | 862 | L862V | L1680V | nonsyn | TtG | GtA | 18 | 1 | 0.0555556 | 5303-5305 |
ORF1ab/nsp3 | 862 | L862X | L1680X | nonsyn | tTg | tAg | 16 | 10 | 0.625 | 5303-5305 |
ORF1ab/nsp3 | 862 | L862K | L1680K | nonsyn | TTg | AAg | 16 | 9 | 0.5625 | 5303-5305 |
ORF1ab/nsp3 | 862 | L862K | L1680K | nonsyn | TTG | AAA | 16 | 7 | 0.4375 | 5303-5305 |
ORF1ab/nsp3 | 862 | L862X | L1680X | nonsyn | tTG | tAA | 16 | 6 | 0.375 | 5303-5305 |
ORF1ab/nsp3 | 862 | L862Y | L1680Y | nonsyn | tTG | tAT | 8 | 8 | 1 | 5303-5305 |
ORF1ab/nsp3 | 862 | L862N | L1680N | nonsyn | TTG | AAT | 7 | 7 | 1 | 5303-5305 |
ORF1ab/nsp3 | 862 | L862S | L1680S | nonsyn | tTg | tCg | 4 | 4 | 1 | 5303-5305 |
ORF1ab/nsp3 | 862 | L862del1 | L1680del1 | del | Ttg | -tg | 3 | 3 | 1 | 5303-5305 |
ORF1ab/nsp3 | 862 | L862W | L1680W | nonsyn | tTg | tGg | 3 | 3 | 1 | 5303-5305 |
ORF1ab/nsp3 | 862 | L862Q | L1680Q | nonsyn | TTg | CAg | 1 | 1 | 1 | 5303-5305 |
ORF1ab/nsp3 | 862 | L862C | L1680C | nonsyn | tTG | tGC | 1 | 1 | 1 | 5303-5305 |
ORF1ab/nsp3 | 862 | L862del2 | L1680del2 | del | tTG | t-- | 1 | 1 | 1 | 5303-5305 |
ORF1ab/nsp3 | 862 | L862A | L1680A | nonsyn | TTg | GCg | 1 | 1 | 1 | 5303-5305 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2632 | 2836 | All | 0.000503 |
ORF1ab/nsp3 | 862 | L862L | Ttg | Ctg | 204 | 2836 | All | 0.000039 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 888 | 1101 | All | 0.00017 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttC | 213 | 1101 | All | 0.000041 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 935 | 944 | AY.25 | 0.005624 |
ORF1ab/nsp3 | 862 | L862L | Ttg | Ctg | 9 | 944 | AY.25 | 0.000054 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 271 | 271 | B.1.1.44 | 0.653012 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 216 | 249 | B.1.1.7 | 0.000193 |
ORF1ab/nsp3 | 862 | L862L | Ttg | Ctg | 33 | 249 | B.1.1.7 | 0.00003 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttC | 123 | 209 | AY.4 | 0.000191 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 86 | 209 | AY.4 | 0.000134 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 187 | 192 | B.1.617.2 | 0.000704 |
ORF1ab/nsp3 | 862 | L862L | Ttg | Ctg | 5 | 192 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 162 | 173 | B.1.617.2 | 0.00061 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttC | 11 | 173 | B.1.617.2 | 0.000041 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 110 | 137 | AY.43 | 0.000487 |
ORF1ab/nsp3 | 862 | L862L | Ttg | Ctg | 27 | 137 | AY.43 | 0.00012 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 106 | 110 | AY.44 | 0.000645 |
ORF1ab/nsp3 | 862 | L862L | Ttg | Ctg | 4 | 110 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 862 | L862L | Ttg | Ctg | 80 | 86 | AY.47 | 0.002488 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 6 | 86 | AY.47 | 0.000187 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 79 | 85 | B.1.1.7 | 0.000071 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttC | 6 | 85 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 76 | 76 | AY.43 | 0.000337 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 67 | 67 | All | 0.000013 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 52 | 56 | B.1 | 0.000476 |
ORF1ab/nsp3 | 862 | L862L | Ttg | Ctg | 4 | 56 | B.1 | 0.000037 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 50 | 56 | B.1.2 | 0.00044 |
ORF1ab/nsp3 | 862 | L862L | Ttg | Ctg | 6 | 56 | B.1.2 | 0.000053 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 44 | 49 | AY.4 | 0.000068 |
ORF1ab/nsp3 | 862 | L862L | Ttg | Ctg | 5 | 49 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttC | 37 | 44 | B.1.2 | 0.000326 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 7 | 44 | B.1.2 | 0.000062 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 30 | 44 | D.2 | 0.002251 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttC | 14 | 44 | D.2 | 0.001051 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 40 | 40 | AY.3 | 0.000398 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 38 | 39 | B.1 | 0.000348 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttC | 1 | 39 | B.1 | 0.000009 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 38 | 38 | B.1.637 | 0.002777 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 35 | 36 | AY.103 | 0.000217 |
ORF1ab/nsp3 | 862 | L862L | Ttg | Ctg | 1 | 36 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 34 | 35 | AY.33 | 0.00227 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttC | 1 | 35 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 35 | 35 | AY.44 | 0.000213 |
ORF1ab/nsp3 | 862 | L862M | Ttg | Atg | 27 | 27 | All | 0.000005 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 26 | 26 | AY.9.2 | 0.000955 |
ORF1ab/nsp3 | 862 | L862I | TtG | AtT | 15 | 24 | All | 0.000003 |
ORF1ab/nsp3 | 862 | L862I | TtG | AtA | 9 | 24 | All | 0.000002 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 24 | 24 | AY.120 | 0.000892 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 24 | 24 | B.1.526 | 0.000564 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 23 | 23 | AY.102 | 0.00061 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 23 | 23 | B.1.1.434 | 0.008017 |
ORF1ab/nsp3 | 862 | L862I | TtG | AtT | 14 | 23 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 862 | L862I | TtG | AtA | 9 | 23 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 23 | 23 | Q.1 | 0.002906 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 22 | 22 | B.1.1.7 | 0.00002 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 21 | 21 | AY.25 | 0.000126 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 21 | 21 | B.1.221 | 0.001492 |
ORF1ab/nsp3 | 862 | L862M | Ttg | Atg | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp3 | 862 | L862V | Ttg | Gtg | 17 | 18 | All | 0.000003 |
ORF1ab/nsp3 | 862 | L862V | TtG | GtA | 1 | 18 | All | 0 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 17 | 18 | B.1.1 | 0.000308 |
ORF1ab/nsp3 | 862 | L862L | Ttg | Ctg | 1 | 18 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 17 | 17 | AY.102 | 0.000451 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 17 | 17 | B.1.429 | 0.0004 |
ORF1ab/nsp3 | 862 | L862X | tTg | tAg | 10 | 16 | All | 0.000002 |
ORF1ab/nsp3 | 862 | L862K | TTg | AAg | 9 | 16 | All | 0.000002 |
ORF1ab/nsp3 | 862 | L862K | TTG | AAA | 7 | 16 | All | 0.000001 |
ORF1ab/nsp3 | 862 | L862X | tTG | tAA | 6 | 16 | All | 0.000001 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 16 | 16 | AY.26 | 0.000453 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 15 | 16 | B.1.1 | 0.000272 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttC | 1 | 16 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 16 | 16 | P.2 | 0.002986 |
ORF1ab/nsp3 | 862 | L862X | tTg | tAg | 9 | 15 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 862 | L862X | tTG | tAA | 6 | 15 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 14 | 14 | AY.33 | 0.000935 |
ORF1ab/nsp3 | 862 | L862K | TTg | AAg | 8 | 14 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 862 | L862K | TTG | AAA | 6 | 14 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 12 | 13 | AY.103 | 0.000075 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttC | 1 | 13 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 862 | L862L | Ttg | Ctg | 10 | 13 | B.1.429 | 0.000235 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 3 | 13 | B.1.429 | 0.000071 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 12 | 12 | B.1.240 | 0.002587 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 11 | 11 | AY.7.1 | 0.00124 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 9 | 10 | AY.39 | 0.000222 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttC | 1 | 10 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 10 | 10 | AY.71 | 0.004751 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 10 | 10 | B.1.1.28 | 0.003112 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 8 | 9 | AY.39 | 0.000198 |
ORF1ab/nsp3 | 862 | L862L | Ttg | Ctg | 1 | 9 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 9 | 9 | AY.4.2 | 0.000195 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 9 | 9 | AY.5.4 | 0.00249 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 9 | 9 | AY.9 | 0.000608 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 9 | 9 | AY.98.1 | 0.000436 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 9 | 9 | B.1.1.254 | 0.101124 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 9 | 9 | B.1.575 | 0.002731 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp3 | 862 | L862Y | tTG | tAT | 8 | 8 | All | 0.000002 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 8 | 8 | AY.120.1 | 0.002568 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 8 | 8 | AY.26 | 0.000226 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 8 | 8 | B.1.36.1 | 0.009122 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 8 | 8 | B.1.409 | 0.00625 |
ORF1ab/nsp3 | 862 | L862N | TTG | AAT | 7 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 7 | 7 | AY.16 | 0.002658 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 7 | 7 | AY.88 | 0.006189 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 7 | 7 | B.1.1.317 | 0.002882 |
ORF1ab/nsp3 | 862 | L862Y | tTG | tAT | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 7 | 7 | B.1.160 | 0.000218 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 7 | 7 | B.1.561 | 0.002779 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 7 | 7 | B.1.621 | 0.00062 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 5 | 6 | B.1.1.519 | 0.000199 |
ORF1ab/nsp3 | 862 | L862L | Ttg | Ctg | 1 | 6 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 862 | L862N | TTG | AAT | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 5 | 6 | B.1.177 | 0.000066 |
ORF1ab/nsp3 | 862 | L862L | Ttg | Ctg | 1 | 6 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 6 | 6 | B.1.517 | 0.002562 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 6 | 6 | B.1.567 | 0.02 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 6 | 6 | B.1.582 | 0.002944 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 5 | 5 | AY.113 | 0.000712 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttC | 5 | 5 | AY.56 | 0.008026 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 5 | 5 | AY.81 | 0.00996 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 5 | 5 | AY.93 | 0.001365 |
ORF1ab/nsp3 | 862 | L862V | Ttg | Gtg | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 5 | 5 | B.1.240.2 | 0.151515 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 4 | 5 | B.1.258 | 0.000266 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttC | 1 | 5 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 4 | 4 | A.27 | 0.006623 |
ORF1ab/nsp3 | 862 | L862S | tTg | tCg | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 3 | 4 | AY.119 | 0.000106 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttC | 1 | 4 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp3 | 862 | L862L | Ttg | Ctg | 3 | 4 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 4 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 862 | L862V | Ttg | Gtg | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 4 | 4 | B.1.1.420 | 0.004024 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 4 | 4 | B.1.1.486 | 0.006309 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 4 | 4 | B.1.181 | 0.078431 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp3 | 862 | L862del1 | Ttg | -tg | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 862 | L862W | tTg | tGg | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 3 | 3 | AY.4.4 | 0.001227 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 3 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 862 | L862L | Ttg | Ctg | 1 | 3 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 3 | 3 | AY.70 | 0.000626 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 3 | 3 | AY.73 | 0.001996 |
ORF1ab/nsp3 | 862 | L862L | Ttg | Ctg | 2 | 3 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 3 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 3 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 862 | L862L | Ttg | Ctg | 1 | 3 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 2 | 3 | B.1.223 | 0.005556 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttC | 1 | 3 | B.1.223 | 0.002778 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp3 | 862 | L862M | Ttg | Atg | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 3 | 3 | P.1.16 | 0.001122 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 3 | 3 | Q.4 | 0.001364 |
ORF1ab/nsp3 | 862 | L862del1 | Ttg | -tg | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 862 | L862L | Ttg | Ctg | 1 | 2 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 2 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttC | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp3 | 862 | L862S | tTg | tCg | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 2 | AY.49 | 0.00639 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 2 | AY.66 | 0.002139 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 2 | 2 | AY.76 | 0.009662 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 2 | AY.86 | 0.00166 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 2 | B.1.1.161 | 0.007067 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 2 | B.1.1.362 | 0.011236 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 2 | 2 | B.1.1.420 | 0.002012 |
ORF1ab/nsp3 | 862 | L862L | Ttg | Ctg | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 2 | 2 | B.1.177.54 | 0.001213 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 2 | B.1.177.77 | 0.001452 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 2 | B.1.443 | 0.009346 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 2 | B.1.478 | 0.023529 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 2 | 2 | B.1.507 | 0.022472 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 2 | B.1.543 | 0.02 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 2 | B.1.560 | 0.009259 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 2 | B.1.588 | 0.00182 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 862 | L862L | Ttg | Ctg | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 2 | 2 | P.1.4 | 0.001953 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp3 | 862 | L862W | tTg | tGg | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp3 | 862 | L862A | TTg | GCg | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 862 | L862C | tTG | tGC | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 862 | L862Q | TTg | CAg | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 862 | L862del2 | tTG | t-- | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttC | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 862 | L862C | tTG | tGC | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 862 | L862V | TtG | GtA | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 862 | L862V | Ttg | Gtg | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttC | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 862 | L862V | Ttg | Gtg | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 862 | L862V | Ttg | Gtg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 862 | L862del1 | Ttg | -tg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttC | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 862 | L862L | Ttg | Ctg | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 862 | L862S | tTg | tCg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 862 | L862M | Ttg | Atg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 862 | L862A | TTg | GCg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 862 | L862M | Ttg | Atg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 862 | L862Q | TTg | CAg | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 862 | L862W | tTg | tGg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 862 | L862V | Ttg | Gtg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttC | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttC | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp3 | 862 | L862M | Ttg | Atg | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 862 | L862V | Ttg | Gtg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | B.1.1.74 | 0.00431 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.1.74 | 0.00431 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 862 | L862S | tTg | tCg | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 862 | L862del2 | tTG | t-- | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 862 | L862V | Ttg | Gtg | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.254 | 0.025 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.306 | 0.005714 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.313 | 0.006579 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.355 | 0.011111 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.405 | 0.012346 |
ORF1ab/nsp3 | 862 | L862L | Ttg | Ctg | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 862 | L862V | Ttg | Gtg | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 862 | L862L | Ttg | Ctg | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp3 | 862 | L862M | Ttg | Atg | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 862 | L862K | TTG | AAA | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.595.1 | 0.005848 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 862 | L862V | Ttg | Gtg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 862 | L862K | TTg | AAg | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 862 | L862N | TTG | AAT | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 862 | L862M | Ttg | Atg | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 862 | L862I | TtG | AtT | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 862 | L862X | tTg | tAg | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 862 | L862Y | tTG | tAT | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 862 | L862W | tTg | tGg | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 862 | L862L | Ttg | Ctg | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp3 | 862 | L862L | ttG | ttA | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 862 | L862del | TTG | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 862 | L862F | ttG | ttT | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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