CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 861

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3861A861SA1679SnonsynGcaTca8995899515300-5302
ORF1ab/nsp3861A861VA1679VnonsyngCagTa5620562015300-5302
ORF1ab/nsp3861A861AA1679AsyngcAgcG9357620.8149735300-5302
ORF1ab/nsp3861A861AA1679AsyngcAgcT9351390.1486635300-5302
ORF1ab/nsp3861A861AA1679AsyngcAgcC935340.03636365300-5302
ORF1ab/nsp3861A861TA1679TnonsynGcaAca3723690.9919355300-5302
ORF1ab/nsp3861A861TA1679TnonsynGcAAcG37220.005376345300-5302
ORF1ab/nsp3861A861TA1679TnonsynGcAAcC37210.002688175300-5302
ORF1ab/nsp3861A861delA1679deldelGCA---696915300-5302
ORF1ab/nsp3861A861EA1679EnonsyngCagAa434315300-5302
ORF1ab/nsp3861A861KA1679KnonsynGCaAAa323215300-5302
ORF1ab/nsp3861A861XA1679XnonsynGCaTAa303015300-5302
ORF1ab/nsp3861A861PA1679PnonsynGcaCca4415300-5302
ORF1ab/nsp3861A861IA1679InonsynGCaATa430.755300-5302
ORF1ab/nsp3861A861LA1679LnonsynGCaTTa430.755300-5302
ORF1ab/nsp3861A861LA1679LnonsynGCACTT410.255300-5302
ORF1ab/nsp3861A861IA1679InonsynGCAATT410.255300-5302
ORF1ab/nsp3861A861del1A1679del1delGca-ca3315300-5302
ORF1ab/nsp3861A861del2A1679del2delgCAg--210.55300-5302
ORF1ab/nsp3861A861del2A1679del2delGCa--a210.55300-5302
ORF1ab/nsp3861A861GA1679GnonsyngCagGa1115300-5302
ORF1ab/nsp3861A861FA1679FnonsynGCATTT1115300-5302
ORF1ab/nsp3861A861YA1679YnonsynGCATAT1115300-5302
ORF1ab/nsp3861A861NA1679NnonsynGCAAAT1115300-5302

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3861A861SGcaTca89958995All0.00172
ORF1ab/nsp3861A861SGcaTca83818381B.1.6370.612422
ORF1ab/nsp3861A861VgCagTa56205620All0.001075
ORF1ab/nsp3861A861VgCagTa12441244B.1.1.70.001114
ORF1ab/nsp3861A861AgcAgcG762935All0.000146
ORF1ab/nsp3861A861AgcAgcT139935All0.000027
ORF1ab/nsp3861A861AgcAgcC34935All0.000007
ORF1ab/nsp3861A861VgCagTa674674AY.200.026195
ORF1ab/nsp3861A861AgcAgcG609629AY.40.000948
ORF1ab/nsp3861A861AgcAgcC14629AY.40.000022
ORF1ab/nsp3861A861AgcAgcT6629AY.40.000009
ORF1ab/nsp3861A861VgCagTa469469AY.250.002821
ORF1ab/nsp3861A861SGcaTca431431B.10.003948
ORF1ab/nsp3861A861TGcaAca369372All0.000071
ORF1ab/nsp3861A861TGcAAcG2372All0
ORF1ab/nsp3861A861TGcAAcC1372All0
ORF1ab/nsp3861A861VgCagTa301301AY.40.000468
ORF1ab/nsp3861A861TGcaAca208208AY.430.000922
ORF1ab/nsp3861A861VgCagTa170170AY.60.006992
ORF1ab/nsp3861A861VgCagTa169169AY.440.001029
ORF1ab/nsp3861A861VgCagTa160160B.1.1.1380.969697
ORF1ab/nsp3861A861VgCagTa152152B.1.1770.002001
ORF1ab/nsp3861A861VgCagTa149149B.1.617.20.000561
ORF1ab/nsp3861A861VgCagTa130130B.1.4210.970149
ORF1ab/nsp3861A861VgCagTa126126AY.1200.004685
ORF1ab/nsp3861A861VgCagTa9393B.1.20.000819
ORF1ab/nsp3861A861VgCagTa8989B.10.000815
ORF1ab/nsp3861A861VgCagTa8989B.1.2400.019185
ORF1ab/nsp3861A861VgCagTa8282AY.430.000363
ORF1ab/nsp3861A861VgCagTa7777AY.1030.000478
ORF1ab/nsp3861A861VgCagTa7676B.1.360.011088
ORF1ab/nsp3861A861VgCagTa7070B.1.4290.001647
ORF1ab/nsp3861A861delGCA---6969All0.000013
ORF1ab/nsp3861A861TGcaAca6363B.1.1.70.000056
ORF1ab/nsp3861A861AgcAgcT5258AY.440.000317
ORF1ab/nsp3861A861AgcAgcG558AY.440.00003
ORF1ab/nsp3861A861AgcAgcC158AY.440.000006
ORF1ab/nsp3861A861VgCagTa5656AY.30.000557
ORF1ab/nsp3861A861VgCagTa5353AY.390.00131
ORF1ab/nsp3861A861VgCagTa4545B.1.10.000816
ORF1ab/nsp3861A861VgCagTa4444B.1.5260.001034
ORF1ab/nsp3861A861EgCagAa4343All0.000008
ORF1ab/nsp3861A861VgCagTa4040P.10.00063
ORF1ab/nsp3861A861EgCagAa3939B.1.1.70.000035
ORF1ab/nsp3861A861VgCagTa3939B.1.258.20.175676
ORF1ab/nsp3861A861AgcAgcG2234B.1.1.70.00002
ORF1ab/nsp3861A861AgcAgcC734B.1.1.70.000006
ORF1ab/nsp3861A861AgcAgcT534B.1.1.70.000004
ORF1ab/nsp3861A861VgCagTa3434B.1.1600.00106
ORF1ab/nsp3861A861VgCagTa3333AY.750.001849
ORF1ab/nsp3861A861KGCaAAa3232All0.000006
ORF1ab/nsp3861A861SGcaTca3131B.1.1.70.000028
ORF1ab/nsp3861A861VgCagTa3131B.1.1.700.010573
ORF1ab/nsp3861A861XGCaTAa3030All0.000006
ORF1ab/nsp3861A861VgCagTa3030AY.290.000473
ORF1ab/nsp3861A861KGCaAAa2828B.1.1.70.000025
ORF1ab/nsp3861A861VgCagTa2828B.1.3960.01976
ORF1ab/nsp3861A861XGCaTAa2727B.1.1.70.000024
ORF1ab/nsp3861A861VgCagTa2626AY.420.001046
ORF1ab/nsp3861A861VgCagTa2626B.1.6210.002301
ORF1ab/nsp3861A861VgCagTa2525AY.98.10.001211
ORF1ab/nsp3861A861VgCagTa2525B.1.4700.035112
ORF1ab/nsp3861A861VgCagTa2323B.1.1.2770.017451
ORF1ab/nsp3861A861delGCA---2323B.1.1.70.000021
ORF1ab/nsp3861A861VgCagTa2222AY.4.20.000477
ORF1ab/nsp3861A861VgCagTa1919B.1.36.290.009829
ORF1ab/nsp3861A861VgCagTa1818AY.1190.000636
ORF1ab/nsp3861A861VgCagTa1818B.1.2100.03838
ORF1ab/nsp3861A861VgCagTa1818B.1.2210.001279
ORF1ab/nsp3861A861AgcAgcG1117B.1.617.20.000041
ORF1ab/nsp3861A861AgcAgcT517B.1.617.20.000019
ORF1ab/nsp3861A861AgcAgcC117B.1.617.20.000004
ORF1ab/nsp3861A861VgCagTa1616AY.1000.000736
ORF1ab/nsp3861A861VgCagTa1616AY.1170.001352
ORF1ab/nsp3861A861SGcaTca1515AY.40.000023
ORF1ab/nsp3861A861AgcAgcG1415AY.420.000563
ORF1ab/nsp3861A861AgcAgcT115AY.420.00004
ORF1ab/nsp3861A861AgcAgcG1515AY.460.001561
ORF1ab/nsp3861A861VgCagTa1515C.370.001741
ORF1ab/nsp3861A861AgcAgcT814B.1.5260.000188
ORF1ab/nsp3861A861AgcAgcG614B.1.5260.000141
ORF1ab/nsp3861A861VgCagTa1313AY.1180.000814
ORF1ab/nsp3861A861VgCagTa1313AY.460.001353
ORF1ab/nsp3861A861VgCagTa1212AY.1130.001709
ORF1ab/nsp3861A861SGcaTca1212B.1.10.000218
ORF1ab/nsp3861A861VgCagTa1212B.1.1.4060.077922
ORF1ab/nsp3861A861VgCagTa1212C.360.010929
ORF1ab/nsp3861A861AgcAgcT811AY.250.000048
ORF1ab/nsp3861A861AgcAgcG211AY.250.000012
ORF1ab/nsp3861A861AgcAgcC111AY.250.000006
ORF1ab/nsp3861A861AgcAgcG911AY.430.00004
ORF1ab/nsp3861A861AgcAgcT211AY.430.000009
ORF1ab/nsp3861A861AgcAgcG1011AY.50.000206
ORF1ab/nsp3861A861AgcAgcT111AY.50.000021
ORF1ab/nsp3861A861AgcAgcG1011B.1.1770.000132
ORF1ab/nsp3861A861AgcAgcT111B.1.1770.000013
ORF1ab/nsp3861A861VgCagTa1111B.1.177.820.005251
ORF1ab/nsp3861A861VgCagTa1111B.1.438.10.00118
ORF1ab/nsp3861A861TGcaAca1111P.1.150.002556
ORF1ab/nsp3861A861VgCagTa1010AY.330.000668
ORF1ab/nsp3861A861TGcaAca1010AY.4.20.000217
ORF1ab/nsp3861A861SGcaTca1010B0.001278
ORF1ab/nsp3861A861VgCagTa1010B.1.1.5190.000397
ORF1ab/nsp3861A861VgCagTa1010B.1.160.160.009294
ORF1ab/nsp3861A861VgCagTa1010B.1.4560.03268
ORF1ab/nsp3861A861AgcAgcT1010P.20.001866
ORF1ab/nsp3861A861VgCagTa99AY.260.000255
ORF1ab/nsp3861A861SGcaTca99AY.390.000222
ORF1ab/nsp3861A861VgCagTa99AY.610.000943
ORF1ab/nsp3861A861VgCagTa99B.1.1260.01148
ORF1ab/nsp3861A861VgCagTa99B.1.3510.000268
ORF1ab/nsp3861A861SGcaTca99B.1.6360.060403
ORF1ab/nsp3861A861VgCagTa99C.160.009544
ORF1ab/nsp3861A861TGcaAca99P.10.000142
ORF1ab/nsp3861A861VgCagTa88AA.10.057971
ORF1ab/nsp3861A861TGcaAca88AY.1030.00005
ORF1ab/nsp3861A861VgCagTa88AY.140.000704
ORF1ab/nsp3861A861VgCagTa88AY.980.000632
ORF1ab/nsp3861A861VgCagTa88B.1.1.280.00249
ORF1ab/nsp3861A861SGcaTca88B.1.177.70.001319
ORF1ab/nsp3861A861SGcaTca88B.1.5260.000188
ORF1ab/nsp3861A861TGcaAca88B.1.617.20.00003
ORF1ab/nsp3861A861VgCagTa77AY.1020.000186
ORF1ab/nsp3861A861AgcAgcC47AY.1030.000025
ORF1ab/nsp3861A861AgcAgcG37AY.1030.000019
ORF1ab/nsp3861A861TGcaAca77AY.250.000042
ORF1ab/nsp3861A861VgCagTa77AY.50.000145
ORF1ab/nsp3861A861VgCagTa77B.1.1.2220.001428
ORF1ab/nsp3861A861VgCagTa77B.1.1.250.00398
ORF1ab/nsp3861A861VgCagTa77B.1.1.3050.027027
ORF1ab/nsp3861A861VgCagTa77B.1.177.100.006146
ORF1ab/nsp3861A861VgCagTa77B.1.177.600.001529
ORF1ab/nsp3861A861SGcaTca77B.1.177.730.003964
ORF1ab/nsp3861A861VgCagTa77B.1.2430.000487
ORF1ab/nsp3861A861VgCagTa77B.1.4270.000353
ORF1ab/nsp3861A861VgCagTa77D.20.000525
ORF1ab/nsp3861A861VgCagTa66AY.39.10.000238
ORF1ab/nsp3861A861VgCagTa66AY.90.000406
ORF1ab/nsp3861A861SGcaTca66AY.98.10.000291
ORF1ab/nsp3861A861AgcAgcT46B.10.000037
ORF1ab/nsp3861A861AgcAgcG26B.10.000018
ORF1ab/nsp3861A861VgCagTa66B.1.1.500.004073
ORF1ab/nsp3861A861SGcaTca66B.1.1.5260.021277
ORF1ab/nsp3861A861VgCagTa66B.1.258.70.011472
ORF1ab/nsp3861A861VgCagTa66B.1.4000.002574
ORF1ab/nsp3861A861VgCagTa66B.1.4990.006303
ORF1ab/nsp3861A861delGCA---66B.1.617.20.000023
ORF1ab/nsp3861A861SGcaTca66B.1.617.20.000023
ORF1ab/nsp3861A861AgcAgcG66P.1.140.000287
ORF1ab/nsp3861A861AgcAgcT35AY.30.00003
ORF1ab/nsp3861A861AgcAgcG25AY.30.00002
ORF1ab/nsp3861A861SGcaTca55AY.440.00003
ORF1ab/nsp3861A861VgCagTa55AY.540.000477
ORF1ab/nsp3861A861AgcAgcT35B.1.10.000054
ORF1ab/nsp3861A861AgcAgcG15B.1.10.000018
ORF1ab/nsp3861A861AgcAgcC15B.1.10.000018
ORF1ab/nsp3861A861VgCagTa55B.1.1.3060.002192
ORF1ab/nsp3861A861VgCagTa55B.1.110.30.003592
ORF1ab/nsp3861A861VgCagTa55B.1.2340.00066
ORF1ab/nsp3861A861AgcAgcT55B.1.4700.007022
ORF1ab/nsp3861A861VgCagTa55B.1.6370.000365
ORF1ab/nsp3861A861VgCagTa44A.23.10.002817
ORF1ab/nsp3861A861PGcaCca44All0.000001
ORF1ab/nsp3861A861LGCaTTa34All0.000001
ORF1ab/nsp3861A861IGCaATa34All0.000001
ORF1ab/nsp3861A861LGCACTT14All0
ORF1ab/nsp3861A861IGCAATT14All0
ORF1ab/nsp3861A861VgCagTa44AY.1100.000451
ORF1ab/nsp3861A861AgcAgcG44AY.390.000099
ORF1ab/nsp3861A861SGcaTca44AY.39.10.000158
ORF1ab/nsp3861A861delGCA---44AY.40.000006
ORF1ab/nsp3861A861TGcaAca44AY.40.000006
ORF1ab/nsp3861A861VgCagTa44AY.4.50.00043
ORF1ab/nsp3861A861VgCagTa44AY.680.001095
ORF1ab/nsp3861A861delGCA---44B.10.000037
ORF1ab/nsp3861A861TGcaAca44B.1.1.5190.000159
ORF1ab/nsp3861A861IGCaATa34B.1.1.70.000003
ORF1ab/nsp3861A861IGCAATT14B.1.1.70.000001
ORF1ab/nsp3861A861SGcaTca44B.1.1080.023256
ORF1ab/nsp3861A861VgCagTa44B.1.2580.000266
ORF1ab/nsp3861A861VgCagTa44B.1.466.20.001565
ORF1ab/nsp3861A861VgCagTa44B.1.5100.105263
ORF1ab/nsp3861A861VgCagTa44B.1.5230.009804
ORF1ab/nsp3861A861VgCagTa44C.170.222222
ORF1ab/nsp3861A861VgCagTa44Q.10.000505
ORF1ab/nsp3861A861VgCagTa33A0.001161
ORF1ab/nsp3861A861del1Gca-ca33All0.000001
ORF1ab/nsp3861A861VgCagTa33AY.1010.001471
ORF1ab/nsp3861A861VgCagTa33AY.1060.001005
ORF1ab/nsp3861A861VgCagTa33AY.1080.003308
ORF1ab/nsp3861A861VgCagTa33AY.230.000209
ORF1ab/nsp3861A861VgCagTa33AY.240.001293
ORF1ab/nsp3861A861SGcaTca33AY.250.000018
ORF1ab/nsp3861A861AgcAgcT23AY.260.000057
ORF1ab/nsp3861A861AgcAgcG13AY.260.000028
ORF1ab/nsp3861A861AgcAgcC33AY.340.000291
ORF1ab/nsp3861A861TGcaAca23AY.440.000012
ORF1ab/nsp3861A861TGcAAcC13AY.440.000006
ORF1ab/nsp3861A861TGcaAca33AY.46.40.000494
ORF1ab/nsp3861A861VgCagTa33AY.590.001589
ORF1ab/nsp3861A861VgCagTa33AY.9.10.000251
ORF1ab/nsp3861A861VgCagTa33AY.9.20.00011
ORF1ab/nsp3861A861VgCagTa33AZ.30.004559
ORF1ab/nsp3861A861AgcAgcG33B.1.1.1630.022901
ORF1ab/nsp3861A861VgCagTa33B.1.1.2140.000166
ORF1ab/nsp3861A861VgCagTa33B.1.1.2840.000322
ORF1ab/nsp3861A861VgCagTa33B.1.1.3330.003229
ORF1ab/nsp3861A861TGcaAca33B.1.1.4480.006098
ORF1ab/nsp3861A861VgCagTa33B.1.177.830.004444
ORF1ab/nsp3861A861AgcAgcT23B.1.20.000018
ORF1ab/nsp3861A861AgcAgcG13B.1.20.000009
ORF1ab/nsp3861A861VgCagTa33B.1.36.80.003
ORF1ab/nsp3861A861AgcAgcG33B.1.4250.008982
ORF1ab/nsp3861A861AgcAgcT23B.1.4290.000047
ORF1ab/nsp3861A861AgcAgcC13B.1.4290.000024
ORF1ab/nsp3861A861TGcaAca33B.1.5260.000071
ORF1ab/nsp3861A861VgCagTa33B.1.617.10.000387
ORF1ab/nsp3861A861VgCagTa33B.1.6280.001057
ORF1ab/nsp3861A861VgCagTa33B.520.030303
ORF1ab/nsp3861A861AgcAgcG33C.140.012987
ORF1ab/nsp3861A861SGcaTca33P.10.000047
ORF1ab/nsp3861A861AgcAgcG33P.10.000047
ORF1ab/nsp3861A861VgCagTa33P.1.120.001452
ORF1ab/nsp3861A861VgCagTa33P.1.150.000697
ORF1ab/nsp3861A861TGcAAcG220.111111
ORF1ab/nsp3861A861delGCA---220.111111
ORF1ab/nsp3861A861VgCagTa22A.20.001324
ORF1ab/nsp3861A861del2gCAg--12All0
ORF1ab/nsp3861A861del2GCa--a12All0
ORF1ab/nsp3861A861VgCagTa22AY.100.00106
ORF1ab/nsp3861A861AgcAgcT22AY.230.000139
ORF1ab/nsp3861A861VgCagTa22AY.23.10.000835
ORF1ab/nsp3861A861VgCagTa22AY.29.10.000441
ORF1ab/nsp3861A861TGcaAca22AY.30.00002
ORF1ab/nsp3861A861VgCagTa22AY.320.001065
ORF1ab/nsp3861A861AgcAgcT12AY.4.20.000022
ORF1ab/nsp3861A861AgcAgcG12AY.4.20.000022
ORF1ab/nsp3861A861delGCA---22AY.430.000009
ORF1ab/nsp3861A861VgCagTa22AY.470.000062
ORF1ab/nsp3861A861VgCagTa22AY.5.30.000675
ORF1ab/nsp3861A861VgCagTa22AY.5.40.000553
ORF1ab/nsp3861A861VgCagTa22AY.530.000575
ORF1ab/nsp3861A861AgcAgcG12AY.610.000105
ORF1ab/nsp3861A861AgcAgcT12AY.610.000105
ORF1ab/nsp3861A861VgCagTa22AY.70.000392
ORF1ab/nsp3861A861VgCagTa22AY.740.000231
ORF1ab/nsp3861A861VgCagTa22AY.75.10.000361
ORF1ab/nsp3861A861VgCagTa22AY.760.009662
ORF1ab/nsp3861A861TGcaAca22AY.90.000135
ORF1ab/nsp3861A861VgCagTa22AZ.10.001735
ORF1ab/nsp3861A861delGCA---22B.1.10.000036
ORF1ab/nsp3861A861VgCagTa22B.1.1.1150.017857
ORF1ab/nsp3861A861VgCagTa22B.1.1.2320.00363
ORF1ab/nsp3861A861VgCagTa22B.1.1.3160.00185
ORF1ab/nsp3861A861VgCagTa22B.1.1.330.000842
ORF1ab/nsp3861A861VgCagTa22B.1.1.3540.008772
ORF1ab/nsp3861A861VgCagTa22B.1.1.3710.020833
ORF1ab/nsp3861A861VgCagTa22B.1.1.4180.045455
ORF1ab/nsp3861A861VgCagTa22B.1.1.4340.000697
ORF1ab/nsp3861A861VgCagTa22B.1.1.5060.074074
ORF1ab/nsp3861A861SGcaTca22B.1.1.5070.017391
ORF1ab/nsp3861A861VgCagTa22B.1.1.5210.010695
ORF1ab/nsp3861A861LGCaTTa22B.1.1.70.000002
ORF1ab/nsp3861A861AgcAgcG12B.1.1600.000031
ORF1ab/nsp3861A861AgcAgcC12B.1.1600.000031
ORF1ab/nsp3861A861VgCagTa22B.1.160.260.004843
ORF1ab/nsp3861A861TGcaAca22B.1.1770.000026
ORF1ab/nsp3861A861VgCagTa22B.1.177.570.000562
ORF1ab/nsp3861A861VgCagTa22B.1.177.70.00033
ORF1ab/nsp3861A861delGCA---22B.1.177.70.00033
ORF1ab/nsp3861A861VgCagTa22B.1.177.730.001133
ORF1ab/nsp3861A861TGcaAca22B.1.20.000018
ORF1ab/nsp3861A861VgCagTa22B.1.258.140.001961
ORF1ab/nsp3861A861VgCagTa22B.1.2930.025
ORF1ab/nsp3861A861VgCagTa22B.1.2980.004228
ORF1ab/nsp3861A861AgcAgcT12B.1.351.20.000303
ORF1ab/nsp3861A861AgcAgcG12B.1.351.20.000303
ORF1ab/nsp3861A861delGCA---22B.1.360.000292
ORF1ab/nsp3861A861AgcAgcT22B.1.36.290.001035
ORF1ab/nsp3861A861VgCagTa22B.1.36.390.004435
ORF1ab/nsp3861A861SGcaTca22B.1.3750.001639
ORF1ab/nsp3861A861SGcaTca22B.1.4130.008511
ORF1ab/nsp3861A861XGCaTAa22B.1.5770.001375
ORF1ab/nsp3861A861VgCagTa22B.1.5960.000174
ORF1ab/nsp3861A861VgCagTa22B.1.6190.001742
ORF1ab/nsp3861A861VgCagTa22B.1.6340.006849
ORF1ab/nsp3861A861VgCagTa22B.400.000729
ORF1ab/nsp3861A861VgCagTa22B.6.60.001778
ORF1ab/nsp3861A861AgcAgcG12C.370.000116
ORF1ab/nsp3861A861AgcAgcT12C.370.000116
ORF1ab/nsp3861A861KGCaAAa22P.10.000032
ORF1ab/nsp3861A861EgCagAa22P.10.000032
ORF1ab/nsp3861A861SGcaTca22P.1.170.000324
ORF1ab/nsp3861A861VgCagTa22P.20.000373
ORF1ab/nsp3861A861VgCagTa11A.10.000282
ORF1ab/nsp3861A861VgCagTa11A.190.009434
ORF1ab/nsp3861A861delGCA---11A.2.20.001689
ORF1ab/nsp3861A861VgCagTa11AD.20.000219
ORF1ab/nsp3861A861delGCA---11AH.30.003802
ORF1ab/nsp3861A861YGCATAT11All0
ORF1ab/nsp3861A861FGCATTT11All0
ORF1ab/nsp3861A861GgCagGa11All0
ORF1ab/nsp3861A861NGCAAAT11All0
ORF1ab/nsp3861A861SGcaTca11AM.30.033333
ORF1ab/nsp3861A861SGcaTca11AY.1030.000006
ORF1ab/nsp3861A861VgCagTa11AY.1140.000231
ORF1ab/nsp3861A861TGcaAca11AY.1190.000035
ORF1ab/nsp3861A861VgCagTa11AY.120.000316
ORF1ab/nsp3861A861VgCagTa11AY.120.20.001285
ORF1ab/nsp3861A861VgCagTa11AY.1210.000135
ORF1ab/nsp3861A861TGcaAca11AY.16.10.00047
ORF1ab/nsp3861A861AgcAgcT11AY.170.008197
ORF1ab/nsp3861A861VgCagTa11AY.180.010101
ORF1ab/nsp3861A861VgCagTa11AY.190.00114
ORF1ab/nsp3861A861SGcaTca11AY.260.000028
ORF1ab/nsp3861A861TGcaAca11AY.260.000028
ORF1ab/nsp3861A861VgCagTa11AY.270.000065
ORF1ab/nsp3861A861SGcaTca11AY.3.10.000085
ORF1ab/nsp3861A861VgCagTa11AY.3.10.000085
ORF1ab/nsp3861A861TGcaAca11AY.320.000532
ORF1ab/nsp3861A861AgcAgcG11AY.330.000067
ORF1ab/nsp3861A861VgCagTa11AY.370.000316
ORF1ab/nsp3861A861delGCA---11AY.390.000025
ORF1ab/nsp3861A861TGcaAca11AY.390.000025
ORF1ab/nsp3861A861VgCagTa11AY.4.2.10.000149
ORF1ab/nsp3861A861delGCA---11AY.4.2.10.000149
ORF1ab/nsp3861A861VgCagTa11AY.4.30.000842
ORF1ab/nsp3861A861VgCagTa11AY.4.40.000409
ORF1ab/nsp3861A861delGCA---11AY.4.50.000107
ORF1ab/nsp3861A861SGcaTca11AY.400.000964
ORF1ab/nsp3861A861TGcaAca11AY.420.00004
ORF1ab/nsp3861A861SGcaTca11AY.430.000004
ORF1ab/nsp3861A861del1Gca-ca11AY.440.000006
ORF1ab/nsp3861A861VgCagTa11AY.450.000122
ORF1ab/nsp3861A861TGcaAca11AY.450.000122
ORF1ab/nsp3861A861AgcAgcG11AY.450.000122
ORF1ab/nsp3861A861VgCagTa11AY.46.20.000635
ORF1ab/nsp3861A861SGcaTca11AY.46.60.000072
ORF1ab/nsp3861A861TGcaAca11AY.46.60.000072
ORF1ab/nsp3861A861VgCagTa11AY.510.000909
ORF1ab/nsp3861A861VgCagTa11AY.520.000814
ORF1ab/nsp3861A861VgCagTa11AY.550.000917
ORF1ab/nsp3861A861VgCagTa11AY.580.000907
ORF1ab/nsp3861A861SGcaTca11AY.610.000105
ORF1ab/nsp3861A861LGCACTT11AY.610.000105
ORF1ab/nsp3861A861VgCagTa11AY.640.000595
ORF1ab/nsp3861A861delGCA---11AY.660.00107
ORF1ab/nsp3861A861AgcAgcG11AY.680.000274
ORF1ab/nsp3861A861VgCagTa11AY.7.10.000113
ORF1ab/nsp3861A861VgCagTa11AY.7.20.000559
ORF1ab/nsp3861A861VgCagTa11AY.720.001361
ORF1ab/nsp3861A861VgCagTa11AY.730.000665
ORF1ab/nsp3861A861AgcAgcG11AY.740.000116
ORF1ab/nsp3861A861delGCA---11AY.750.000056
ORF1ab/nsp3861A861VgCagTa11AY.770.001127
ORF1ab/nsp3861A861TGcaAca11AY.790.001211
ORF1ab/nsp3861A861VgCagTa11AY.840.000437
ORF1ab/nsp3861A861AgcAgcG11AY.840.000437
ORF1ab/nsp3861A861VgCagTa11AY.870.000833
ORF1ab/nsp3861A861AgcAgcG11AY.9.20.000037
ORF1ab/nsp3861A861SGcaTca11AY.9.20.000037
ORF1ab/nsp3861A861VgCagTa11AY.91.10.004065
ORF1ab/nsp3861A861VgCagTa11AY.920.000287
ORF1ab/nsp3861A861AgcAgcG11AY.930.000273
ORF1ab/nsp3861A861VgCagTa11AY.99.20.000092
ORF1ab/nsp3861A861del1Gca-ca11B0.000128
ORF1ab/nsp3861A861TGcaAca11B.10.000009
ORF1ab/nsp3861A861TGcaAca11B.1.10.000018
ORF1ab/nsp3861A861del1Gca-ca11B.1.10.000018
ORF1ab/nsp3861A861delGCA---11B.1.1.10.000327
ORF1ab/nsp3861A861VgCagTa11B.1.1.1320.014925
ORF1ab/nsp3861A861VgCagTa11B.1.1.1410.002012
ORF1ab/nsp3861A861delGCA---11B.1.1.1420.017544
ORF1ab/nsp3861A861VgCagTa11B.1.1.1890.001513
ORF1ab/nsp3861A861VgCagTa11B.1.1.1920.002309
ORF1ab/nsp3861A861VgCagTa11B.1.1.2070.001182
ORF1ab/nsp3861A861SGcaTca11B.1.1.2140.000055
ORF1ab/nsp3861A861VgCagTa11B.1.1.2160.00089
ORF1ab/nsp3861A861AgcAgcT11B.1.1.2270.004348
ORF1ab/nsp3861A861AgcAgcT11B.1.1.280.000311
ORF1ab/nsp3861A861AgcAgcT11B.1.1.2840.000107
ORF1ab/nsp3861A861SGcaTca11B.1.1.3010.001179
ORF1ab/nsp3861A861VgCagTa11B.1.1.3040.002809
ORF1ab/nsp3861A861TGcaAca11B.1.1.3060.000438
ORF1ab/nsp3861A861GgCagGa11B.1.1.3060.000438
ORF1ab/nsp3861A861SGcaTca11B.1.1.3060.000438
ORF1ab/nsp3861A861VgCagTa11B.1.1.3170.000412
ORF1ab/nsp3861A861VgCagTa11B.1.1.3180.000302
ORF1ab/nsp3861A861VgCagTa11B.1.1.3260.001761
ORF1ab/nsp3861A861AgcAgcG11B.1.1.330.000421
ORF1ab/nsp3861A861VgCagTa11B.1.1.3530.020833
ORF1ab/nsp3861A861VgCagTa11B.1.1.3690.000446
ORF1ab/nsp3861A861TGcaAca11B.1.1.3720.000689
ORF1ab/nsp3861A861VgCagTa11B.1.1.390.00051
ORF1ab/nsp3861A861VgCagTa11B.1.1.3960.045455
ORF1ab/nsp3861A861VgCagTa11B.1.1.3970.002252
ORF1ab/nsp3861A861VgCagTa11B.1.1.4090.002833
ORF1ab/nsp3861A861delGCA---11B.1.1.4200.001006
ORF1ab/nsp3861A861AgcAgcT11B.1.1.4340.000349
ORF1ab/nsp3861A861AgcAgcG11B.1.1.460.004367
ORF1ab/nsp3861A861VgCagTa11B.1.1.4620.008621
ORF1ab/nsp3861A861VgCagTa11B.1.1.4640.001473
ORF1ab/nsp3861A861VgCagTa11B.1.1.4870.005587
ORF1ab/nsp3861A861PGcaCca11B.1.1.5070.008696
ORF1ab/nsp3861A861VgCagTa11B.1.1.5170.006803
ORF1ab/nsp3861A861AgcAgcT11B.1.1.5190.00004
ORF1ab/nsp3861A861NGCAAAT11B.1.1.70.000001
ORF1ab/nsp3861A861YGCATAT11B.1.1.70.000001
ORF1ab/nsp3861A861del2gCAg--11B.1.1.70.000001
ORF1ab/nsp3861A861PGcaCca11B.1.1.70.000001
ORF1ab/nsp3861A861FGCATTT11B.1.1.70.000001
ORF1ab/nsp3861A861VgCagTa11B.1.1180.006711
ORF1ab/nsp3861A861VgCagTa11B.1.1390.000733
ORF1ab/nsp3861A861SGcaTca11B.1.1600.000031
ORF1ab/nsp3861A861VgCagTa11B.1.1700.00431
ORF1ab/nsp3861A861delGCA---11B.1.1770.000013
ORF1ab/nsp3861A861delGCA---11B.1.177.160.000664
ORF1ab/nsp3861A861delGCA---11B.1.177.170.000821
ORF1ab/nsp3861A861AgcAgcT11B.1.177.180.00116
ORF1ab/nsp3861A861delGCA---11B.1.177.180.00116
ORF1ab/nsp3861A861SGcaTca11B.1.177.190.001431
ORF1ab/nsp3861A861VgCagTa11B.1.177.210.000076
ORF1ab/nsp3861A861PGcaCca11B.1.177.330.001645
ORF1ab/nsp3861A861VgCagTa11B.1.177.40.000211
ORF1ab/nsp3861A861VgCagTa11B.1.177.410.0025
ORF1ab/nsp3861A861VgCagTa11B.1.177.440.000519
ORF1ab/nsp3861A861VgCagTa11B.1.177.560.000668
ORF1ab/nsp3861A861delGCA---11B.1.177.570.000281
ORF1ab/nsp3861A861SGcaTca11B.1.177.650.000665
ORF1ab/nsp3861A861VgCagTa11B.1.177.750.001041
ORF1ab/nsp3861A861VgCagTa11B.1.177.810.000189
ORF1ab/nsp3861A861AgcAgcT11B.1.177.850.005435
ORF1ab/nsp3861A861PGcaCca11B.1.20.000009
ORF1ab/nsp3861A861SGcaTca11B.1.20.000009
ORF1ab/nsp3861A861del2GCa--a11B.1.20.000009
ORF1ab/nsp3861A861VgCagTa11B.1.2410.000812
ORF1ab/nsp3861A861AgcAgcT11B.1.2430.00007
ORF1ab/nsp3861A861SGcaTca11B.1.243.10.022222
ORF1ab/nsp3861A861TGcaAca11B.1.2580.000067
ORF1ab/nsp3861A861VgCagTa11B.1.258.110.000396
ORF1ab/nsp3861A861AgcAgcG11B.1.2700.005618
ORF1ab/nsp3861A861SGcaTca11B.1.3110.000275
ORF1ab/nsp3861A861VgCagTa11B.1.3110.000275
ORF1ab/nsp3861A861delGCA---11B.1.3190.003049
ORF1ab/nsp3861A861VgCagTa11B.1.3290.000608
ORF1ab/nsp3861A861SGcaTca11B.1.3360.002439
ORF1ab/nsp3861A861VgCagTa11B.1.3490.000715
ORF1ab/nsp3861A861SGcaTca11B.1.3500.002933
ORF1ab/nsp3861A861TGcaAca11B.1.3510.00003
ORF1ab/nsp3861A861VgCagTa11B.1.351.20.000303
ORF1ab/nsp3861A861EgCagAa11B.1.351.30.000876
ORF1ab/nsp3861A861SGcaTca11B.1.3560.001727
ORF1ab/nsp3861A861SGcaTca11B.1.360.000146
ORF1ab/nsp3861A861AgcAgcT11B.1.36.160.001425
ORF1ab/nsp3861A861VgCagTa11B.1.36.240.006173
ORF1ab/nsp3861A861VgCagTa11B.1.36.310.001751
ORF1ab/nsp3861A861VgCagTa11B.1.3690.000285
ORF1ab/nsp3861A861VgCagTa11B.1.3750.00082
ORF1ab/nsp3861A861VgCagTa11B.1.3980.002976
ORF1ab/nsp3861A861SGcaTca11B.1.3990.001934
ORF1ab/nsp3861A861AgcAgcG11B.1.416.10.001563
ORF1ab/nsp3861A861delGCA---11B.1.416.10.001563
ORF1ab/nsp3861A861SGcaTca11B.1.4270.00005
ORF1ab/nsp3861A861TGcaAca11B.1.4290.000024
ORF1ab/nsp3861A861SGcaTca11B.1.4290.000024
ORF1ab/nsp3861A861VgCagTa11B.1.4360.001029
ORF1ab/nsp3861A861VgCagTa11B.1.4590.004082
ORF1ab/nsp3861A861VgCagTa11B.1.4650.003802
ORF1ab/nsp3861A861VgCagTa11B.1.4740.001901
ORF1ab/nsp3861A861VgCagTa11B.1.4970.000315
ORF1ab/nsp3861A861VgCagTa11B.1.5250.000113
ORF1ab/nsp3861A861KGCaAAa11B.1.5740.002151
ORF1ab/nsp3861A861EgCagAa11B.1.5770.000687
ORF1ab/nsp3861A861KGCaAAa11B.1.5770.000687
ORF1ab/nsp3861A861TGcaAca11B.1.5960.000087
ORF1ab/nsp3861A861VgCagTa11B.1.6090.000479
ORF1ab/nsp3861A861delGCA---11B.1.617.30.002985
ORF1ab/nsp3861A861SGcaTca11B.1.6180.004032
ORF1ab/nsp3861A861VgCagTa11B.1.619.10.000641
ORF1ab/nsp3861A861AgcAgcG11B.1.6210.000089
ORF1ab/nsp3861A861delGCA---11B.1.6210.000089
ORF1ab/nsp3861A861SGcaTca11B.1.6230.000536
ORF1ab/nsp3861A861delGCA---11B.1.6300.005236
ORF1ab/nsp3861A861VgCagTa11B.1.6310.003367
ORF1ab/nsp3861A861LGCaTTa11B.1.6370.000073
ORF1ab/nsp3861A861delGCA---11B.150.017544
ORF1ab/nsp3861A861VgCagTa11B.390.002331
ORF1ab/nsp3861A861VgCagTa11B.60.00091
ORF1ab/nsp3861A861VgCagTa11C.110.010638
ORF1ab/nsp3861A861VgCagTa11C.20.016129
ORF1ab/nsp3861A861VgCagTa11C.330.058824
ORF1ab/nsp3861A861AgcAgcT11D.20.000075
ORF1ab/nsp3861A861XGCaTAa11P.1.10.000318
ORF1ab/nsp3861A861SGcaTca11P.1.120.000484
ORF1ab/nsp3861A861VgCagTa11P.1.140.000048
ORF1ab/nsp3861A861VgCagTa11P.1.170.000162
ORF1ab/nsp3861A861VgCagTa11P.60.003145
ORF1ab/nsp3861A861VgCagTa11P.70.004367
ORF1ab/nsp3861A861VgCagTa11Q.30.000145
ORF1ab/nsp3861A861delGCA---11Q.80.000165
ORF1ab/nsp3861A861TGcaAca11Q.80.000165
ORF1ab/nsp3861A861SGcaTca11R.10.00009