CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 860 | T860I | T1678I | nonsyn | aCt | aTt | 809 | 801 | 0.990111 | 5297-5299 |
ORF1ab/nsp3 | 860 | T860I | T1678I | nonsyn | aCT | aTA | 809 | 7 | 0.00865266 | 5297-5299 |
ORF1ab/nsp3 | 860 | T860I | T1678I | nonsyn | aCT | aTC | 809 | 1 | 0.00123609 | 5297-5299 |
ORF1ab/nsp3 | 860 | T860T | T1678T | syn | acT | acC | 319 | 194 | 0.60815 | 5297-5299 |
ORF1ab/nsp3 | 860 | T860T | T1678T | syn | acT | acA | 319 | 74 | 0.231975 | 5297-5299 |
ORF1ab/nsp3 | 860 | T860T | T1678T | syn | acT | acG | 319 | 51 | 0.159875 | 5297-5299 |
ORF1ab/nsp3 | 860 | T860N | T1678N | nonsyn | aCt | aAt | 245 | 245 | 1 | 5297-5299 |
ORF1ab/nsp3 | 860 | T860A | T1678A | nonsyn | Act | Gct | 244 | 244 | 1 | 5297-5299 |
ORF1ab/nsp3 | 860 | T860del | T1678del | del | ACT | --- | 68 | 68 | 1 | 5297-5299 |
ORF1ab/nsp3 | 860 | T860S | T1678S | nonsyn | aCt | aGt | 45 | 21 | 0.466667 | 5297-5299 |
ORF1ab/nsp3 | 860 | T860S | T1678S | nonsyn | Act | Tct | 45 | 17 | 0.377778 | 5297-5299 |
ORF1ab/nsp3 | 860 | T860S | T1678S | nonsyn | AcT | TcA | 45 | 7 | 0.155556 | 5297-5299 |
ORF1ab/nsp3 | 860 | T860K | T1678K | nonsyn | aCT | aAA | 16 | 16 | 1 | 5297-5299 |
ORF1ab/nsp3 | 860 | T860P | T1678P | nonsyn | Act | Cct | 10 | 7 | 0.7 | 5297-5299 |
ORF1ab/nsp3 | 860 | T860P | T1678P | nonsyn | AcT | CcA | 10 | 3 | 0.3 | 5297-5299 |
ORF1ab/nsp3 | 860 | T860L | T1678L | nonsyn | ACT | TTA | 9 | 6 | 0.666667 | 5297-5299 |
ORF1ab/nsp3 | 860 | T860L | T1678L | nonsyn | ACt | CTt | 9 | 3 | 0.333333 | 5297-5299 |
ORF1ab/nsp3 | 860 | T860F | T1678F | nonsyn | ACt | TTt | 7 | 7 | 1 | 5297-5299 |
ORF1ab/nsp3 | 860 | T860Y | T1678Y | nonsyn | ACt | TAt | 6 | 6 | 1 | 5297-5299 |
ORF1ab/nsp3 | 860 | T860X | T1678X | nonsyn | ACT | TAA | 5 | 5 | 1 | 5297-5299 |
ORF1ab/nsp3 | 860 | T860H | T1678H | nonsyn | ACt | CAt | 5 | 4 | 0.8 | 5297-5299 |
ORF1ab/nsp3 | 860 | T860H | T1678H | nonsyn | ACT | CAC | 5 | 1 | 0.2 | 5297-5299 |
ORF1ab/nsp3 | 860 | T860Q | T1678Q | nonsyn | ACT | CAA | 3 | 3 | 1 | 5297-5299 |
ORF1ab/nsp3 | 860 | T860del1 | T1678del1 | del | Act | -ct | 3 | 2 | 0.666667 | 5297-5299 |
ORF1ab/nsp3 | 860 | T860del1 | T1678del1 | del | acT | ac- | 3 | 1 | 0.333333 | 5297-5299 |
ORF1ab/nsp3 | 860 | T860M | T1678M | nonsyn | aCT | aTG | 1 | 1 | 1 | 5297-5299 |
ORF1ab/nsp3 | 860 | T860del2 | T1678del2 | del | aCT | a-- | 1 | 1 | 1 | 5297-5299 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 801 | 809 | All | 0.000153 |
ORF1ab/nsp3 | 860 | T860I | aCT | aTA | 7 | 809 | All | 0.000001 |
ORF1ab/nsp3 | 860 | T860I | aCT | aTC | 1 | 809 | All | 0 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 194 | 319 | All | 0.000037 |
ORF1ab/nsp3 | 860 | T860T | acT | acA | 74 | 319 | All | 0.000014 |
ORF1ab/nsp3 | 860 | T860T | acT | acG | 51 | 319 | All | 0.00001 |
ORF1ab/nsp3 | 860 | T860N | aCt | aAt | 245 | 245 | All | 0.000047 |
ORF1ab/nsp3 | 860 | T860A | Act | Gct | 244 | 244 | All | 0.000047 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 242 | 242 | B.1.617.2 | 0.000911 |
ORF1ab/nsp3 | 860 | T860N | aCt | aAt | 187 | 187 | B.1.1.7 | 0.000167 |
ORF1ab/nsp3 | 860 | T860A | Act | Gct | 138 | 138 | AY.113 | 0.01965 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 81 | 81 | AY.43 | 0.000359 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 68 | 68 | All | 0.000013 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 52 | 52 | P.1 | 0.000819 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 49 | 49 | AY.7 | 0.009604 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 31 | 48 | B.1.1.7 | 0.000028 |
ORF1ab/nsp3 | 860 | T860T | acT | acA | 17 | 48 | B.1.1.7 | 0.000015 |
ORF1ab/nsp3 | 860 | T860S | aCt | aGt | 21 | 45 | All | 0.000004 |
ORF1ab/nsp3 | 860 | T860S | Act | Tct | 17 | 45 | All | 0.000003 |
ORF1ab/nsp3 | 860 | T860S | AcT | TcA | 7 | 45 | All | 0.000001 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 45 | 45 | AY.4 | 0.00007 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 41 | 44 | AY.4 | 0.000064 |
ORF1ab/nsp3 | 860 | T860T | acT | acA | 2 | 44 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 860 | T860T | acT | acG | 1 | 44 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 35 | 42 | B.1.1.7 | 0.000031 |
ORF1ab/nsp3 | 860 | T860I | aCT | aTA | 7 | 42 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 40 | 40 | AY.25 | 0.000241 |
ORF1ab/nsp3 | 860 | T860A | Act | Gct | 37 | 37 | B.1.1.7 | 0.000033 |
ORF1ab/nsp3 | 860 | T860S | aCt | aGt | 19 | 34 | B.1.1.7 | 0.000017 |
ORF1ab/nsp3 | 860 | T860S | Act | Tct | 9 | 34 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 860 | T860S | AcT | TcA | 6 | 34 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 860 | T860T | acT | acG | 25 | 25 | B.1.194 | 1 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 22 | 22 | B.1.1.7 | 0.00002 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 22 | 22 | B.1.596 | 0.001917 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 18 | 18 | AY.103 | 0.000112 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 18 | 18 | B.1.177 | 0.000237 |
ORF1ab/nsp3 | 860 | T860N | aCt | aAt | 17 | 17 | B.1.623 | 0.00912 |
ORF1ab/nsp3 | 860 | T860K | aCT | aAA | 16 | 16 | All | 0.000003 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 16 | 16 | AY.25 | 0.000096 |
ORF1ab/nsp3 | 860 | T860T | acT | acA | 14 | 15 | B.1.1 | 0.000254 |
ORF1ab/nsp3 | 860 | T860T | acT | acG | 1 | 15 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 860 | T860K | aCT | aAA | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 9 | 14 | AY.43 | 0.00004 |
ORF1ab/nsp3 | 860 | T860T | acT | acG | 5 | 14 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 13 | 13 | AY.117 | 0.001099 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 13 | 13 | AY.47 | 0.000404 |
ORF1ab/nsp3 | 860 | T860A | Act | Gct | 13 | 13 | B.1.240 | 0.002802 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 12 | 12 | B.1.2 | 0.000106 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 10 | 11 | AY.44 | 0.000061 |
ORF1ab/nsp3 | 860 | T860I | aCT | aTC | 1 | 11 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 860 | T860P | Act | Cct | 7 | 10 | All | 0.000001 |
ORF1ab/nsp3 | 860 | T860P | AcT | CcA | 3 | 10 | All | 0.000001 |
ORF1ab/nsp3 | 860 | T860N | aCt | aAt | 10 | 10 | B.1.406 | 0.060606 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 8 | 10 | B.1.617.2 | 0.00003 |
ORF1ab/nsp3 | 860 | T860T | acT | acA | 2 | 10 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 860 | T860L | ACT | TTA | 6 | 9 | All | 0.000001 |
ORF1ab/nsp3 | 860 | T860L | ACt | CTt | 3 | 9 | All | 0.000001 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 8 | 9 | AY.39 | 0.000198 |
ORF1ab/nsp3 | 860 | T860T | acT | acA | 1 | 9 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 860 | T860T | acT | acG | 9 | 9 | AY.39.1 | 0.000357 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp3 | 860 | T860P | Act | Cct | 6 | 9 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 860 | T860P | AcT | CcA | 3 | 9 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 8 | 8 | AY.23 | 0.000558 |
ORF1ab/nsp3 | 860 | T860L | ACT | TTA | 6 | 8 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 860 | T860L | ACt | CTt | 2 | 8 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 860 | T860F | ACt | TTt | 7 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 7 | 7 | AY.39.1 | 0.000277 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp3 | 860 | T860A | Act | Gct | 7 | 7 | B.1.1.348 | 0.005573 |
ORF1ab/nsp3 | 860 | T860F | ACt | TTt | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 7 | 7 | B.1.427 | 0.000353 |
ORF1ab/nsp3 | 860 | T860T | acT | acA | 7 | 7 | B.1.595 | 0.001827 |
ORF1ab/nsp3 | 860 | T860S | Act | Tct | 6 | 7 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 860 | T860S | AcT | TcA | 1 | 7 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 860 | T860T | acT | acA | 7 | 7 | B.1.623 | 0.003755 |
ORF1ab/nsp3 | 860 | T860T | acT | acA | 6 | 7 | P.1 | 0.000095 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 1 | 7 | P.1 | 0.000016 |
ORF1ab/nsp3 | 860 | T860Y | ACt | TAt | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp3 | 860 | T860A | Act | Gct | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 6 | 6 | AY.74 | 0.000694 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 6 | 6 | AY.83 | 0.010345 |
ORF1ab/nsp3 | 860 | T860T | acT | acG | 4 | 6 | B.1 | 0.000037 |
ORF1ab/nsp3 | 860 | T860T | acT | acA | 2 | 6 | B.1 | 0.000018 |
ORF1ab/nsp3 | 860 | T860Y | ACt | TAt | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 860 | T860A | Act | Gct | 6 | 6 | B.1.258 | 0.000399 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 860 | T860A | Act | Gct | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp3 | 860 | T860X | ACT | TAA | 5 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 860 | T860H | ACt | CAt | 4 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 860 | T860H | ACT | CAC | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 860 | T860N | aCt | aAt | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 860 | T860A | Act | Gct | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 860 | T860X | ACT | TAA | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 4 | 5 | B.1.429 | 0.000094 |
ORF1ab/nsp3 | 860 | T860T | acT | acA | 1 | 5 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 4 | 4 | AY.46.5 | 0.000794 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 4 | 4 | AY.79 | 0.004843 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 860 | T860H | ACt | CAt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 860 | T860A | Act | Gct | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 860 | T860T | acT | acA | 3 | 4 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 1 | 4 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp3 | 860 | T860Q | ACT | CAA | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 860 | T860del1 | Act | -ct | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 860 | T860del1 | acT | ac- | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 3 | 3 | AY.30 | 0.001187 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp3 | 860 | T860A | Act | Gct | 3 | 3 | AY.57 | 0.001969 |
ORF1ab/nsp3 | 860 | T860N | aCt | aAt | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 860 | T860Q | ACT | CAA | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 860 | T860T | acT | acA | 3 | 3 | B.1.620 | 0.002838 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 860 | T860A | Act | Gct | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 860 | T860N | aCt | aAt | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 2 | 2 | AY.4.3 | 0.001684 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 860 | T860N | aCt | aAt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 860 | T860N | aCt | aAt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 860 | T860N | aCt | aAt | 2 | 2 | AY.66 | 0.002139 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 1 | 2 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 860 | T860T | acT | acG | 1 | 2 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 860 | T860T | acT | acG | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 2 | 2 | B.1.239 | 0.002442 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 1 | 2 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 860 | T860T | acT | acA | 1 | 2 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 860 | T860A | Act | Gct | 2 | 2 | B.1.416.1 | 0.003125 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp3 | 860 | T860N | aCt | aAt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 860 | T860A | Act | Gct | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 860 | T860N | aCt | aAt | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp3 | 860 | T860del2 | aCT | a-- | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 860 | T860M | aCT | aTG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 860 | T860A | Act | Gct | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 860 | T860N | aCt | aAt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 860 | T860A | Act | Gct | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 860 | T860A | Act | Gct | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 860 | T860A | Act | Gct | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 860 | T860N | aCt | aAt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 860 | T860T | acT | acA | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp3 | 860 | T860S | Act | Tct | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 860 | T860T | acT | acA | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 860 | T860M | aCT | aTG | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 860 | T860S | Act | Tct | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 860 | T860T | acT | acA | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 860 | T860N | aCt | aAt | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 860 | T860T | acT | acA | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 860 | T860A | Act | Gct | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 860 | T860A | Act | Gct | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 860 | T860A | Act | Gct | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | AZ.6 | 0.008403 |
ORF1ab/nsp3 | 860 | T860L | ACt | CTt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 860 | T860N | aCt | aAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 860 | T860A | Act | Gct | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 860 | T860P | Act | Cct | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 860 | T860N | aCt | aAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 860 | T860A | Act | Gct | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 860 | T860T | acT | acA | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 860 | T860A | Act | Gct | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 860 | T860N | aCt | aAt | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 860 | T860S | aCt | aGt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 860 | T860A | Act | Gct | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 860 | T860del1 | acT | ac- | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp3 | 860 | T860del1 | Act | -ct | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 860 | T860N | aCt | aAt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 860 | T860T | acT | acG | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 860 | T860T | acT | acA | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp3 | 860 | T860N | aCt | aAt | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 860 | T860N | aCt | aAt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 860 | T860H | ACT | CAC | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp3 | 860 | T860N | aCt | aAt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 860 | T860T | acT | acG | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 860 | T860T | acT | acA | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp3 | 860 | T860T | acT | acG | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp3 | 860 | T860del1 | Act | -ct | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 860 | T860del2 | aCT | a-- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 860 | T860N | aCt | aAt | 1 | 1 | B.28 | 0.003279 |
ORF1ab/nsp3 | 860 | T860T | acT | acA | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 860 | T860A | Act | Gct | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 860 | T860K | aCT | aAA | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 860 | T860S | aCt | aGt | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 860 | T860I | aCt | aTt | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 860 | T860A | Act | Gct | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 860 | T860T | acT | acG | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 860 | T860del | ACT | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 860 | T860T | acT | acC | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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