CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 860

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3860T860IT1678InonsynaCtaTt8098010.9901115297-5299
ORF1ab/nsp3860T860IT1678InonsynaCTaTA80970.008652665297-5299
ORF1ab/nsp3860T860IT1678InonsynaCTaTC80910.001236095297-5299
ORF1ab/nsp3860T860TT1678TsynacTacC3191940.608155297-5299
ORF1ab/nsp3860T860TT1678TsynacTacA319740.2319755297-5299
ORF1ab/nsp3860T860TT1678TsynacTacG319510.1598755297-5299
ORF1ab/nsp3860T860NT1678NnonsynaCtaAt24524515297-5299
ORF1ab/nsp3860T860AT1678AnonsynActGct24424415297-5299
ORF1ab/nsp3860T860delT1678deldelACT---686815297-5299
ORF1ab/nsp3860T860ST1678SnonsynaCtaGt45210.4666675297-5299
ORF1ab/nsp3860T860ST1678SnonsynActTct45170.3777785297-5299
ORF1ab/nsp3860T860ST1678SnonsynAcTTcA4570.1555565297-5299
ORF1ab/nsp3860T860KT1678KnonsynaCTaAA161615297-5299
ORF1ab/nsp3860T860PT1678PnonsynActCct1070.75297-5299
ORF1ab/nsp3860T860PT1678PnonsynAcTCcA1030.35297-5299
ORF1ab/nsp3860T860LT1678LnonsynACTTTA960.6666675297-5299
ORF1ab/nsp3860T860LT1678LnonsynACtCTt930.3333335297-5299
ORF1ab/nsp3860T860FT1678FnonsynACtTTt7715297-5299
ORF1ab/nsp3860T860YT1678YnonsynACtTAt6615297-5299
ORF1ab/nsp3860T860XT1678XnonsynACTTAA5515297-5299
ORF1ab/nsp3860T860HT1678HnonsynACtCAt540.85297-5299
ORF1ab/nsp3860T860HT1678HnonsynACTCAC510.25297-5299
ORF1ab/nsp3860T860QT1678QnonsynACTCAA3315297-5299
ORF1ab/nsp3860T860del1T1678del1delAct-ct320.6666675297-5299
ORF1ab/nsp3860T860del1T1678del1delacTac-310.3333335297-5299
ORF1ab/nsp3860T860MT1678MnonsynaCTaTG1115297-5299
ORF1ab/nsp3860T860del2T1678del2delaCTa--1115297-5299

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3860T860IaCtaTt801809All0.000153
ORF1ab/nsp3860T860IaCTaTA7809All0.000001
ORF1ab/nsp3860T860IaCTaTC1809All0
ORF1ab/nsp3860T860TacTacC194319All0.000037
ORF1ab/nsp3860T860TacTacA74319All0.000014
ORF1ab/nsp3860T860TacTacG51319All0.00001
ORF1ab/nsp3860T860NaCtaAt245245All0.000047
ORF1ab/nsp3860T860AActGct244244All0.000047
ORF1ab/nsp3860T860IaCtaTt242242B.1.617.20.000911
ORF1ab/nsp3860T860NaCtaAt187187B.1.1.70.000167
ORF1ab/nsp3860T860AActGct138138AY.1130.01965
ORF1ab/nsp3860T860IaCtaTt8181AY.430.000359
ORF1ab/nsp3860T860delACT---6868All0.000013
ORF1ab/nsp3860T860IaCtaTt5252P.10.000819
ORF1ab/nsp3860T860IaCtaTt4949AY.70.009604
ORF1ab/nsp3860T860TacTacC3148B.1.1.70.000028
ORF1ab/nsp3860T860TacTacA1748B.1.1.70.000015
ORF1ab/nsp3860T860SaCtaGt2145All0.000004
ORF1ab/nsp3860T860SActTct1745All0.000003
ORF1ab/nsp3860T860SAcTTcA745All0.000001
ORF1ab/nsp3860T860IaCtaTt4545AY.40.00007
ORF1ab/nsp3860T860TacTacC4144AY.40.000064
ORF1ab/nsp3860T860TacTacA244AY.40.000003
ORF1ab/nsp3860T860TacTacG144AY.40.000002
ORF1ab/nsp3860T860IaCtaTt3542B.1.1.70.000031
ORF1ab/nsp3860T860IaCTaTA742B.1.1.70.000006
ORF1ab/nsp3860T860IaCtaTt4040AY.250.000241
ORF1ab/nsp3860T860AActGct3737B.1.1.70.000033
ORF1ab/nsp3860T860SaCtaGt1934B.1.1.70.000017
ORF1ab/nsp3860T860SActTct934B.1.1.70.000008
ORF1ab/nsp3860T860SAcTTcA634B.1.1.70.000005
ORF1ab/nsp3860T860TacTacG2525B.1.1941
ORF1ab/nsp3860T860delACT---2222B.1.1.70.00002
ORF1ab/nsp3860T860IaCtaTt2222B.1.5960.001917
ORF1ab/nsp3860T860IaCtaTt1818AY.1030.000112
ORF1ab/nsp3860T860IaCtaTt1818B.1.1770.000237
ORF1ab/nsp3860T860NaCtaAt1717B.1.6230.00912
ORF1ab/nsp3860T860KaCTaAA1616All0.000003
ORF1ab/nsp3860T860TacTacC1616AY.250.000096
ORF1ab/nsp3860T860TacTacA1415B.1.10.000254
ORF1ab/nsp3860T860TacTacG115B.1.10.000018
ORF1ab/nsp3860T860KaCTaAA1515B.1.1.70.000013
ORF1ab/nsp3860T860TacTacC914AY.430.00004
ORF1ab/nsp3860T860TacTacG514AY.430.000022
ORF1ab/nsp3860T860IaCtaTt1313AY.1170.001099
ORF1ab/nsp3860T860TacTacC1313AY.470.000404
ORF1ab/nsp3860T860AActGct1313B.1.2400.002802
ORF1ab/nsp3860T860IaCtaTt1212B.1.20.000106
ORF1ab/nsp3860T860IaCtaTt1111AY.390.000272
ORF1ab/nsp3860T860IaCtaTt1011AY.440.000061
ORF1ab/nsp3860T860IaCTaTC111AY.440.000006
ORF1ab/nsp3860T860PActCct710All0.000001
ORF1ab/nsp3860T860PAcTCcA310All0.000001
ORF1ab/nsp3860T860NaCtaAt1010B.1.4060.060606
ORF1ab/nsp3860T860TacTacC810B.1.617.20.00003
ORF1ab/nsp3860T860TacTacA210B.1.617.20.000008
ORF1ab/nsp3860T860LACTTTA69All0.000001
ORF1ab/nsp3860T860LACtCTt39All0.000001
ORF1ab/nsp3860T860TacTacC89AY.390.000198
ORF1ab/nsp3860T860TacTacA19AY.390.000025
ORF1ab/nsp3860T860TacTacG99AY.39.10.000357
ORF1ab/nsp3860T860TacTacC99AY.440.000055
ORF1ab/nsp3860T860PActCct69B.1.1.70.000005
ORF1ab/nsp3860T860PAcTCcA39B.1.1.70.000003
ORF1ab/nsp3860T860IaCtaTt88AY.230.000558
ORF1ab/nsp3860T860LACTTTA68B.1.1.70.000005
ORF1ab/nsp3860T860LACtCTt28B.1.1.70.000002
ORF1ab/nsp3860T860FACtTTt77All0.000001
ORF1ab/nsp3860T860IaCtaTt77AY.39.10.000277
ORF1ab/nsp3860T860IaCtaTt77B.10.000064
ORF1ab/nsp3860T860AActGct77B.1.1.3480.005573
ORF1ab/nsp3860T860FACtTTt77B.1.1.70.000006
ORF1ab/nsp3860T860IaCtaTt77B.1.4270.000353
ORF1ab/nsp3860T860TacTacA77B.1.5950.001827
ORF1ab/nsp3860T860SActTct67B.1.617.20.000023
ORF1ab/nsp3860T860SAcTTcA17B.1.617.20.000004
ORF1ab/nsp3860T860TacTacA77B.1.6230.003755
ORF1ab/nsp3860T860TacTacA67P.10.000095
ORF1ab/nsp3860T860TacTacC17P.10.000016
ORF1ab/nsp3860T860YACtTAt66All0.000001
ORF1ab/nsp3860T860TacTacC66AY.260.00017
ORF1ab/nsp3860T860IaCtaTt66AY.4.20.00013
ORF1ab/nsp3860T860AActGct66AY.440.000037
ORF1ab/nsp3860T860TacTacC66AY.460.000624
ORF1ab/nsp3860T860TacTacC66AY.740.000694
ORF1ab/nsp3860T860IaCtaTt66AY.830.010345
ORF1ab/nsp3860T860TacTacG46B.10.000037
ORF1ab/nsp3860T860TacTacA26B.10.000018
ORF1ab/nsp3860T860YACtTAt66B.1.1.70.000005
ORF1ab/nsp3860T860AActGct66B.1.2580.000399
ORF1ab/nsp3860T860delACT---66B.1.617.20.000023
ORF1ab/nsp3860T860AActGct66P.10.000095
ORF1ab/nsp3860T860XACTTAA55All0.000001
ORF1ab/nsp3860T860HACtCAt45All0.000001
ORF1ab/nsp3860T860HACTCAC15All0
ORF1ab/nsp3860T860NaCtaAt55AY.40.000008
ORF1ab/nsp3860T860AActGct55AY.40.000008
ORF1ab/nsp3860T860XACTTAA55B.1.1.70.000004
ORF1ab/nsp3860T860IaCtaTt55B.1.3510.000149
ORF1ab/nsp3860T860TacTacC45B.1.4290.000094
ORF1ab/nsp3860T860TacTacA15B.1.4290.000024
ORF1ab/nsp3860T860IaCtaTt44AY.1130.00057
ORF1ab/nsp3860T860delACT---44AY.40.000006
ORF1ab/nsp3860T860IaCtaTt44AY.4.2.10.000596
ORF1ab/nsp3860T860IaCtaTt44AY.4.50.00043
ORF1ab/nsp3860T860IaCtaTt44AY.46.40.000658
ORF1ab/nsp3860T860IaCtaTt44AY.46.50.000794
ORF1ab/nsp3860T860IaCtaTt44AY.50.000083
ORF1ab/nsp3860T860IaCtaTt44AY.790.004843
ORF1ab/nsp3860T860delACT---44B.10.000037
ORF1ab/nsp3860T860HACtCAt44B.1.1.70.000004
ORF1ab/nsp3860T860AActGct44B.1.1770.000053
ORF1ab/nsp3860T860TacTacA34B.1.1770.00004
ORF1ab/nsp3860T860TacTacC14B.1.1770.000013
ORF1ab/nsp3860T860IaCtaTt44P.1.140.000191
ORF1ab/nsp3860T860QACTCAA33All0.000001
ORF1ab/nsp3860T860del1Act-ct23All0
ORF1ab/nsp3860T860del1acTac-13All0
ORF1ab/nsp3860T860IaCtaTt33AY.1020.00008
ORF1ab/nsp3860T860TacTacC33AY.300.001187
ORF1ab/nsp3860T860IaCtaTt33AY.460.000312
ORF1ab/nsp3860T860AActGct33AY.570.001969
ORF1ab/nsp3860T860NaCtaAt33AY.750.000168
ORF1ab/nsp3860T860IaCtaTt33B.1.10.000054
ORF1ab/nsp3860T860IaCtaTt33B.1.1.3180.000905
ORF1ab/nsp3860T860IaCtaTt33B.1.1.5190.000119
ORF1ab/nsp3860T860QACTCAA33B.1.1.70.000003
ORF1ab/nsp3860T860IaCtaTt33B.1.5260.000071
ORF1ab/nsp3860T860TacTacA33B.1.6200.002838
ORF1ab/nsp3860T860TacTacC22AY.1020.000053
ORF1ab/nsp3860T860AActGct22AY.1170.000169
ORF1ab/nsp3860T860IaCtaTt22AY.1190.000071
ORF1ab/nsp3860T860NaCtaAt22AY.1190.000071
ORF1ab/nsp3860T860TacTacC22AY.290.000032
ORF1ab/nsp3860T860IaCtaTt22AY.30.00002
ORF1ab/nsp3860T860IaCtaTt22AY.330.000134
ORF1ab/nsp3860T860IaCtaTt22AY.4.30.001684
ORF1ab/nsp3860T860delACT---22AY.430.000009
ORF1ab/nsp3860T860NaCtaAt22AY.430.000009
ORF1ab/nsp3860T860NaCtaAt22AY.440.000012
ORF1ab/nsp3860T860IaCtaTt22AY.60.000082
ORF1ab/nsp3860T860NaCtaAt22AY.660.002139
ORF1ab/nsp3860T860TacTacC22AY.730.001331
ORF1ab/nsp3860T860IaCtaTt22AY.99.20.000184
ORF1ab/nsp3860T860delACT---22B.1.10.000036
ORF1ab/nsp3860T860delACT---22B.1.1770.000026
ORF1ab/nsp3860T860TacTacC22B.1.177.120.000303
ORF1ab/nsp3860T860delACT---22B.1.177.70.00033
ORF1ab/nsp3860T860TacTacC12B.1.177.730.000566
ORF1ab/nsp3860T860TacTacG12B.1.177.730.000566
ORF1ab/nsp3860T860TacTacG12B.1.20.000009
ORF1ab/nsp3860T860TacTacC12B.1.20.000009
ORF1ab/nsp3860T860IaCtaTt22B.1.2340.000264
ORF1ab/nsp3860T860IaCtaTt22B.1.2390.002442
ORF1ab/nsp3860T860TacTacC12B.1.3510.00003
ORF1ab/nsp3860T860TacTacA12B.1.3510.00003
ORF1ab/nsp3860T860delACT---22B.1.360.000292
ORF1ab/nsp3860T860AActGct22B.1.416.10.003125
ORF1ab/nsp3860T860IaCtaTt22B.1.438.10.000215
ORF1ab/nsp3860T860NaCtaAt22B.1.617.20.000008
ORF1ab/nsp3860T860AActGct22B.1.617.20.000008
ORF1ab/nsp3860T860NaCtaAt22P.10.000032
ORF1ab/nsp3860T860delACT---11A.2.20.001689
ORF1ab/nsp3860T860IaCtaTt11A.2.50.000499
ORF1ab/nsp3860T860delACT---11AH.30.003802
ORF1ab/nsp3860T860del2aCTa--11All0
ORF1ab/nsp3860T860MaCTaTG11All0
ORF1ab/nsp3860T860IaCtaTt11AY.1000.000046
ORF1ab/nsp3860T860TacTacC11AY.1030.000006
ORF1ab/nsp3860T860TacTacC11AY.1050.000643
ORF1ab/nsp3860T860IaCtaTt11AY.1100.000113
ORF1ab/nsp3860T860TacTacC11AY.1110.000183
ORF1ab/nsp3860T860IaCtaTt11AY.1160.000287
ORF1ab/nsp3860T860TacTacC11AY.1190.000035
ORF1ab/nsp3860T860IaCtaTt11AY.1200.000037
ORF1ab/nsp3860T860TacTacC11AY.1210.000135
ORF1ab/nsp3860T860TacTacC11AY.200.000039
ORF1ab/nsp3860T860AActGct11AY.250.000006
ORF1ab/nsp3860T860IaCtaTt11AY.260.000028
ORF1ab/nsp3860T860NaCtaAt11AY.290.000016
ORF1ab/nsp3860T860AActGct11AY.30.00001
ORF1ab/nsp3860T860IaCtaTt11AY.3.10.000085
ORF1ab/nsp3860T860IaCtaTt11AY.340.000097
ORF1ab/nsp3860T860IaCtaTt11AY.34.10.00051
ORF1ab/nsp3860T860AActGct11AY.360.000148
ORF1ab/nsp3860T860AActGct11AY.390.000025
ORF1ab/nsp3860T860delACT---11AY.390.000025
ORF1ab/nsp3860T860NaCtaAt11AY.39.10.00004
ORF1ab/nsp3860T860delACT---11AY.4.2.10.000149
ORF1ab/nsp3860T860TacTacC11AY.4.2.10.000149
ORF1ab/nsp3860T860delACT---11AY.4.50.000107
ORF1ab/nsp3860T860IaCtaTt11AY.420.00004
ORF1ab/nsp3860T860TacTacA11AY.420.00004
ORF1ab/nsp3860T860delACT---11AY.440.000006
ORF1ab/nsp3860T860IaCtaTt11AY.450.000122
ORF1ab/nsp3860T860IaCtaTt11AY.46.30.000934
ORF1ab/nsp3860T860SActTct11AY.470.000031
ORF1ab/nsp3860T860IaCtaTt11AY.5.20.002463
ORF1ab/nsp3860T860IaCtaTt11AY.5.30.000337
ORF1ab/nsp3860T860TacTacC11AY.5.40.000277
ORF1ab/nsp3860T860TacTacA11AY.520.000814
ORF1ab/nsp3860T860MaCTaTG11AY.610.000105
ORF1ab/nsp3860T860delACT---11AY.660.00107
ORF1ab/nsp3860T860SActTct11AY.690.000187
ORF1ab/nsp3860T860IaCtaTt11AY.730.000665
ORF1ab/nsp3860T860delACT---11AY.750.000056
ORF1ab/nsp3860T860TacTacA11AY.750.000056
ORF1ab/nsp3860T860NaCtaAt11AY.790.001211
ORF1ab/nsp3860T860TacTacA11AY.80.000606
ORF1ab/nsp3860T860IaCtaTt11AY.840.000437
ORF1ab/nsp3860T860AActGct11AY.90.000068
ORF1ab/nsp3860T860TacTacC11AY.9.20.000037
ORF1ab/nsp3860T860AActGct11AY.910.00073
ORF1ab/nsp3860T860IaCtaTt11AY.910.00073
ORF1ab/nsp3860T860AActGct11AY.920.000287
ORF1ab/nsp3860T860IaCtaTt11AY.950.000761
ORF1ab/nsp3860T860TacTacC11AY.980.000079
ORF1ab/nsp3860T860IaCtaTt11AZ.60.008403
ORF1ab/nsp3860T860LACtCTt11B.10.000009
ORF1ab/nsp3860T860NaCtaAt11B.10.000009
ORF1ab/nsp3860T860AActGct11B.10.000009
ORF1ab/nsp3860T860PActCct11B.1.10.000018
ORF1ab/nsp3860T860NaCtaAt11B.1.10.000018
ORF1ab/nsp3860T860AActGct11B.1.10.000018
ORF1ab/nsp3860T860IaCtaTt11B.1.1.10.000327
ORF1ab/nsp3860T860delACT---11B.1.1.10.000327
ORF1ab/nsp3860T860delACT---11B.1.1.1420.017544
ORF1ab/nsp3860T860TacTacA11B.1.1.1760.000439
ORF1ab/nsp3860T860IaCtaTt11B.1.1.2140.000055
ORF1ab/nsp3860T860TacTacC11B.1.1.2140.000055
ORF1ab/nsp3860T860IaCtaTt11B.1.1.250.000569
ORF1ab/nsp3860T860AActGct11B.1.1.280.000311
ORF1ab/nsp3860T860NaCtaAt11B.1.1.2940.001266
ORF1ab/nsp3860T860IaCtaTt11B.1.1.3060.000438
ORF1ab/nsp3860T860SaCtaGt11B.1.1.3060.000438
ORF1ab/nsp3860T860IaCtaTt11B.1.1.370.000193
ORF1ab/nsp3860T860IaCtaTt11B.1.1.3720.000689
ORF1ab/nsp3860T860AActGct11B.1.1.4160.000905
ORF1ab/nsp3860T860delACT---11B.1.1.4200.001006
ORF1ab/nsp3860T860IaCtaTt11B.1.1.4320.001266
ORF1ab/nsp3860T860del1acTac-11B.1.1.5070.008696
ORF1ab/nsp3860T860del1Act-ct11B.1.1.70.000001
ORF1ab/nsp3860T860IaCtaTt11B.1.1600.000031
ORF1ab/nsp3860T860NaCtaAt11B.1.1770.000013
ORF1ab/nsp3860T860delACT---11B.1.177.160.000664
ORF1ab/nsp3860T860delACT---11B.1.177.170.000821
ORF1ab/nsp3860T860delACT---11B.1.177.180.00116
ORF1ab/nsp3860T860TacTacG11B.1.177.210.000076
ORF1ab/nsp3860T860TacTacA11B.1.177.510.004566
ORF1ab/nsp3860T860delACT---11B.1.177.570.000281
ORF1ab/nsp3860T860IaCtaTt11B.1.177.600.000218
ORF1ab/nsp3860T860TacTacC11B.1.177.600.000218
ORF1ab/nsp3860T860IaCtaTt11B.1.177.720.00339
ORF1ab/nsp3860T860NaCtaAt11B.1.177.810.000189
ORF1ab/nsp3860T860NaCtaAt11B.1.20.000009
ORF1ab/nsp3860T860HACTCAC11B.1.20.000009
ORF1ab/nsp3860T860IaCtaTt11B.1.220.001318
ORF1ab/nsp3860T860TacTacC11B.1.2210.000071
ORF1ab/nsp3860T860TacTacC11B.1.2430.00007
ORF1ab/nsp3860T860IaCtaTt11B.1.2790.000514
ORF1ab/nsp3860T860delACT---11B.1.3190.003049
ORF1ab/nsp3860T860IaCtaTt11B.1.3380.008621
ORF1ab/nsp3860T860NaCtaAt11B.1.3510.00003
ORF1ab/nsp3860T860IaCtaTt11B.1.36.290.000517
ORF1ab/nsp3860T860IaCtaTt11B.1.3690.000285
ORF1ab/nsp3860T860TacTacC11B.1.4090.000781
ORF1ab/nsp3860T860delACT---11B.1.416.10.001563
ORF1ab/nsp3860T860IaCtaTt11B.1.4290.000024
ORF1ab/nsp3860T860TacTacC11B.1.466.20.000391
ORF1ab/nsp3860T860IaCtaTt11B.1.5250.000113
ORF1ab/nsp3860T860TacTacG11B.1.5250.000113
ORF1ab/nsp3860T860TacTacA11B.1.5380.008065
ORF1ab/nsp3860T860TacTacG11B.1.5800.004065
ORF1ab/nsp3860T860TacTacC11B.1.5960.000087
ORF1ab/nsp3860T860TacTacC11B.1.6000.005848
ORF1ab/nsp3860T860del1Act-ct11B.1.617.20.000004
ORF1ab/nsp3860T860del2aCTa--11B.1.617.30.002985
ORF1ab/nsp3860T860delACT---11B.1.6210.000089
ORF1ab/nsp3860T860delACT---11B.1.6300.005236
ORF1ab/nsp3860T860delACT---11B.150.017544
ORF1ab/nsp3860T860NaCtaAt11B.280.003279
ORF1ab/nsp3860T860TacTacA11B.30.000831
ORF1ab/nsp3860T860AActGct11D.20.000075
ORF1ab/nsp3860T860KaCTaAA11P.10.000016
ORF1ab/nsp3860T860delACT---11P.1.10.000318
ORF1ab/nsp3860T860SaCtaGt11P.1.10.000318
ORF1ab/nsp3860T860IaCtaTt11P.1.120.000484
ORF1ab/nsp3860T860TacTacC11P.1.140.000048
ORF1ab/nsp3860T860IaCtaTt11P.1.150.000232
ORF1ab/nsp3860T860TacTacC11P.1.70.000319
ORF1ab/nsp3860T860IaCtaTt11P.1.70.000319
ORF1ab/nsp3860T860AActGct11Q.30.000145
ORF1ab/nsp3860T860TacTacG11Q.80.000165
ORF1ab/nsp3860T860delACT---11Q.80.000165
ORF1ab/nsp3860T860TacTacC11R.10.00009