CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 852 | A852V | A1670V | nonsyn | gCa | gTa | 1428 | 1428 | 1 | 5273-5275 |
ORF1ab/nsp3 | 852 | A852T | A1670T | nonsyn | Gca | Aca | 632 | 632 | 1 | 5273-5275 |
ORF1ab/nsp3 | 852 | A852A | A1670A | syn | gcA | gcT | 477 | 273 | 0.572327 | 5273-5275 |
ORF1ab/nsp3 | 852 | A852A | A1670A | syn | gcA | gcG | 477 | 173 | 0.362683 | 5273-5275 |
ORF1ab/nsp3 | 852 | A852A | A1670A | syn | gcA | gcC | 477 | 31 | 0.0649895 | 5273-5275 |
ORF1ab/nsp3 | 852 | A852S | A1670S | nonsyn | Gca | Tca | 175 | 175 | 1 | 5273-5275 |
ORF1ab/nsp3 | 852 | A852del | A1670del | del | GCA | --- | 57 | 57 | 1 | 5273-5275 |
ORF1ab/nsp3 | 852 | A852Q | A1670Q | nonsyn | GCa | CAa | 18 | 18 | 1 | 5273-5275 |
ORF1ab/nsp3 | 852 | A852E | A1670E | nonsyn | gCa | gAa | 15 | 15 | 1 | 5273-5275 |
ORF1ab/nsp3 | 852 | A852G | A1670G | nonsyn | gCa | gGa | 8 | 8 | 1 | 5273-5275 |
ORF1ab/nsp3 | 852 | A852P | A1670P | nonsyn | Gca | Cca | 6 | 6 | 1 | 5273-5275 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1428 | 1428 | All | 0.000273 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 632 | 632 | All | 0.000121 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 551 | 551 | AY.3 | 0.00548 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 273 | 477 | All | 0.000052 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 173 | 477 | All | 0.000033 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcC | 31 | 477 | All | 0.000006 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 193 | 193 | AY.117 | 0.016312 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 175 | 175 | All | 0.000033 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 152 | 152 | AY.4 | 0.000237 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 126 | 126 | B.1.2 | 0.001109 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 103 | 103 | B.1.337 | 0.575419 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 102 | 102 | B.1.1.7 | 0.000091 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 101 | 101 | P.1.7 | 0.032248 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 85 | 85 | B.1.1.7 | 0.000076 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 57 | 77 | B.1.617.2 | 0.000215 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 20 | 77 | B.1.617.2 | 0.000075 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 35 | 73 | B.1.1.7 | 0.000031 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 22 | 73 | B.1.1.7 | 0.00002 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcC | 16 | 73 | B.1.1.7 | 0.000014 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 65 | 65 | B.1.177 | 0.000856 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 57 | 57 | All | 0.000011 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 56 | 56 | AY.4 | 0.000087 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 41 | 54 | AY.4 | 0.000064 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcC | 8 | 54 | AY.4 | 0.000012 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 5 | 54 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 48 | 48 | B.1.1.433 | 0.068376 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 45 | 45 | AY.42 | 0.00181 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 42 | 42 | P.1 | 0.000662 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 29 | 39 | AY.3 | 0.000288 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 10 | 39 | AY.3 | 0.000099 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 35 | 35 | AY.54 | 0.003337 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 32 | 32 | B.1.617.2 | 0.00012 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 26 | 26 | AY.43 | 0.000115 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 26 | 26 | B.1.617.2 | 0.000098 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 25 | 25 | AY.4 | 0.000039 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 24 | 24 | B.1 | 0.00022 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 22 | 22 | B.1.617.2 | 0.000083 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 20 | 20 | B.1 | 0.000183 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 20 | 20 | B.1.1.7 | 0.000018 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 19 | 19 | C.37 | 0.002205 |
ORF1ab/nsp3 | 852 | A852Q | GCa | CAa | 18 | 18 | All | 0.000003 |
ORF1ab/nsp3 | 852 | A852Q | GCa | CAa | 18 | 18 | B.1.2 | 0.000158 |
ORF1ab/nsp3 | 852 | A852E | gCa | gAa | 15 | 15 | All | 0.000003 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 15 | 15 | B.1.177 | 0.000198 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 8 | 15 | B.1.429 | 0.000188 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 7 | 15 | B.1.429 | 0.000165 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 14 | 14 | B.1.110.3 | 0.010057 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 14 | 14 | B.1.617.1 | 0.001806 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 7 | 13 | AY.44 | 0.000043 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 6 | 13 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 13 | 13 | B.1.2 | 0.000114 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 11 | 11 | AY.103 | 0.000068 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 10 | 11 | AY.25 | 0.00006 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 1 | 11 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 11 | 11 | AY.67 | 0.005107 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 10 | 10 | AY.121 | 0.001353 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 10 | 10 | AY.44 | 0.000061 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 9 | 9 | B.1.36.26 | 0.025714 |
ORF1ab/nsp3 | 852 | A852G | gCa | gGa | 8 | 8 | All | 0.000002 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 7 | 8 | AY.103 | 0.000043 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 1 | 8 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 8 | 8 | AY.39 | 0.000198 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 4 | 7 | AY.102 | 0.000106 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 3 | 7 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 7 | 7 | B.1.427 | 0.000353 |
ORF1ab/nsp3 | 852 | A852P | Gca | Cca | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 5 | 6 | B.1.2 | 0.000044 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 1 | 6 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 6 | 6 | B.1.606 | 0.036145 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 4 | 5 | AY.118 | 0.000251 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 1 | 5 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 5 | 5 | AY.86 | 0.004149 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 5 | 5 | B.1.438.1 | 0.000536 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 3 | 4 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 1 | 4 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 4 | 4 | AY.120.1 | 0.001284 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcC | 3 | 4 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 1 | 4 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 852 | A852E | gCa | gAa | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 852 | A852E | gCa | gAa | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 2 | 4 | B.1 | 0.000018 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcC | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 4 | 4 | B.1.1.37 | 0.000771 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 4 | 4 | B.1.1.523 | 0.00625 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 3 | 4 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 1 | 4 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 4 | 4 | B.1.36.18 | 0.001681 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 3 | 4 | B.1.637 | 0.000219 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 1 | 4 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 3 | 3 | AY.120.2 | 0.003856 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 2 | 3 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 1 | 3 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 3 | 3 | AY.84 | 0.001312 |
ORF1ab/nsp3 | 852 | A852P | Gca | Cca | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 852 | A852G | gCa | gGa | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 3 | 3 | B.1.1.294 | 0.003797 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 3 | 3 | B.1.177.60 | 0.000655 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 3 | 3 | B.1.576 | 0.00272 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 852 | A852P | Gca | Cca | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcC | 1 | 2 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 1 | 2 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 2 | 2 | AY.89 | 0.009804 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 1 | 2 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 1 | 2 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 852 | A852E | gCa | gAa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 1 | 2 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 1 | 2 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 2 | 2 | B.1.160.26 | 0.004843 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 2 | 2 | B.1.177.82 | 0.000955 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 1 | 2 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 1 | 2 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 852 | A852E | gCa | gAa | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 852 | A852E | gCa | gAa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 852 | A852G | gCa | gGa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 852 | A852E | gCa | gAa | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 1 | 1 | B.1.1.334 | 0.016393 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | B.1.1.365 | 0.005587 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 1 | 1 | B.1.1.391 | 0.008547 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 852 | A852P | Gca | Cca | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 852 | A852G | gCa | gGa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 852 | A852E | gCa | gAa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | B.1.160.8 | 0.001289 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 1 | 1 | B.1.302 | 0.013333 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcC | 1 | 1 | B.1.602 | 0.006536 |
ORF1ab/nsp3 | 852 | A852G | gCa | gGa | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | B.10 | 0.008264 |
ORF1ab/nsp3 | 852 | A852del | GCA | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcG | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 852 | A852A | gcA | gcT | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 852 | A852G | gCa | gGa | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 852 | A852G | gCa | gGa | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 852 | A852S | Gca | Tca | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 852 | A852T | Gca | Aca | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 852 | A852V | gCa | gTa | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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