CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 848 & Codon = Gct

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3848S848AS1666AnonsynTctGct84810.9642865261-5263

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3848S848ATctGct8184All0.000015
ORF1ab/nsp3848S848ATctGct2020AY.430.000089
ORF1ab/nsp3848S848ATctGct1011B.1.1.70.000009
ORF1ab/nsp3848S848ATctGct77AY.420.000282
ORF1ab/nsp3848S848ATctGct55AY.40.000008
ORF1ab/nsp3848S848ATctGct44AY.5.30.00135
ORF1ab/nsp3848S848ATctGct33AY.50.000062
ORF1ab/nsp3848S848ATctGct33AY.98.10.000145
ORF1ab/nsp3848S848ATctGct33B.1.617.20.000011
ORF1ab/nsp3848S848ATctGct22AY.340.000194
ORF1ab/nsp3848S848ATctGct22AY.46.60.000144
ORF1ab/nsp3848S848ATctGct22AY.5.40.000553
ORF1ab/nsp3848S848ATctGct12B.1.3670.000792
ORF1ab/nsp3848S848ATctGct11AW.10.003049
ORF1ab/nsp3848S848ATctGct11AY.1110.000183
ORF1ab/nsp3848S848ATctGct11AY.120.20.001285
ORF1ab/nsp3848S848ATctGct11AY.230.00007
ORF1ab/nsp3848S848ATctGct11AY.250.000006
ORF1ab/nsp3848S848ATctGct11AY.39.10.00004
ORF1ab/nsp3848S848ATctGct11AY.4.20.000022
ORF1ab/nsp3848S848ATctGct11AY.440.000006
ORF1ab/nsp3848S848ATctGct11AY.46.40.000165
ORF1ab/nsp3848S848ATctGct11AY.75.10.00018
ORF1ab/nsp3848S848ATctGct11AY.9.20.000037
ORF1ab/nsp3848S848ATctGct11AY.980.000079
ORF1ab/nsp3848S848ATctGct11B.1.10.000018
ORF1ab/nsp3848S848ATctGct11B.1.177.150.000631
ORF1ab/nsp3848S848ATctGct11B.1.4290.000024
ORF1ab/nsp3848S848ATctGct11B.1.5260.000024
ORF1ab/nsp3848S848ATctGct11B.4.50.011905
ORF1ab/nsp3848S848ATctGct11P.10.000016
ORF1ab/nsp3848S848ATctGct11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.