CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 848

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3848S848SS1666SsyntcTtcC4523970.8783195261-5263
ORF1ab/nsp3848S848SS1666SsyntcTtcA452450.09955755261-5263
ORF1ab/nsp3848S848SS1666SsyntcTtcG452100.02212395261-5263
ORF1ab/nsp3848S848delS1666deldelTCT---44744715261-5263
ORF1ab/nsp3848S848AS1666AnonsynTctGct84810.9642865261-5263
ORF1ab/nsp3848S848AS1666AnonsynTcTGcC8430.03571435261-5263
ORF1ab/nsp3848S848YS1666YnonsyntCttAt828215261-5263
ORF1ab/nsp3848S848FS1666FnonsyntCttTt232315261-5263
ORF1ab/nsp3848S848CS1666CnonsyntCttGt18170.9444445261-5263
ORF1ab/nsp3848S848CS1666CnonsyntCTtGC1810.05555565261-5263
ORF1ab/nsp3848S848GS1666GnonsynTCTGGC13110.8461545261-5263
ORF1ab/nsp3848S848GS1666GnonsynTCtGGt1320.1538465261-5263
ORF1ab/nsp3848S848PS1666PnonsynTctCct12110.9166675261-5263
ORF1ab/nsp3848S848PS1666PnonsynTcTCcC1210.08333335261-5263
ORF1ab/nsp3848S848TS1666TnonsynTctAct970.7777785261-5263
ORF1ab/nsp3848S848TS1666TnonsynTcTAcA910.1111115261-5263
ORF1ab/nsp3848S848TS1666TnonsynTcTAcG910.1111115261-5263
ORF1ab/nsp3848S848del1S1666del1deltcTtc-420.55261-5263
ORF1ab/nsp3848S848del1S1666del1delTcTAc-410.255261-5263
ORF1ab/nsp3848S848del1S1666del1delTct-ct410.255261-5263
ORF1ab/nsp3848S848del2S1666del2delTCt--t3315261-5263
ORF1ab/nsp3848S848DS1666DnonsynTCtGAt1115261-5263
ORF1ab/nsp3848S848LS1666LnonsynTCTCTA1115261-5263
ORF1ab/nsp3848S848NS1666NnonsynTCTAAC1115261-5263

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3848S848StcTtcC397452All0.000076
ORF1ab/nsp3848S848StcTtcA45452All0.000009
ORF1ab/nsp3848S848StcTtcG10452All0.000002
ORF1ab/nsp3848S848delTCT---447447All0.000085
ORF1ab/nsp3848S848StcTtcC211211B.1.6180.850806
ORF1ab/nsp3848S848delTCT---125125B.1.1.70.000112
ORF1ab/nsp3848S848ATctGct8184All0.000015
ORF1ab/nsp3848S848ATcTGcC384All0.000001
ORF1ab/nsp3848S848YtCttAt8282All0.000016
ORF1ab/nsp3848S848delTCT---8181B.1.617.10.010446
ORF1ab/nsp3848S848StcTtcA3859B.1.617.10.004901
ORF1ab/nsp3848S848StcTtcC2159B.1.617.10.002708
ORF1ab/nsp3848S848delTCT---4949B.10.000449
ORF1ab/nsp3848S848delTCT---4747AY.440.000286
ORF1ab/nsp3848S848StcTtcC4040B.1.20.000352
ORF1ab/nsp3848S848YtCttAt3232AY.40.00005
ORF1ab/nsp3848S848StcTtcC2828AY.430.000124
ORF1ab/nsp3848S848FtCttTt2323All0.000004
ORF1ab/nsp3848S848YtCttAt2323AY.4.50.002472
ORF1ab/nsp3848S848StcTtcC1521AY.40.000023
ORF1ab/nsp3848S848StcTtcG621AY.40.000009
ORF1ab/nsp3848S848ATctGct2020AY.430.000089
ORF1ab/nsp3848S848StcTtcC1820B.1.617.20.000068
ORF1ab/nsp3848S848StcTtcA220B.1.617.20.000008
ORF1ab/nsp3848S848CtCttGt1718All0.000003
ORF1ab/nsp3848S848CtCTtGC118All0
ORF1ab/nsp3848S848delTCT---1616AY.1030.000099
ORF1ab/nsp3848S848StcTtcC1414B.1.5820.006869
ORF1ab/nsp3848S848GTCTGGC1113All0.000002
ORF1ab/nsp3848S848GTCtGGt213All0
ORF1ab/nsp3848S848PTctCct1112All0.000002
ORF1ab/nsp3848S848PTcTCcC112All0
ORF1ab/nsp3848S848delTCT---1212B.1.10.000218
ORF1ab/nsp3848S848ATctGct1011B.1.1.70.000009
ORF1ab/nsp3848S848ATcTGcC111B.1.1.70.000001
ORF1ab/nsp3848S848StcTtcC1010C.160.010604
ORF1ab/nsp3848S848TTctAct79All0.000001
ORF1ab/nsp3848S848TTcTAcA19All0
ORF1ab/nsp3848S848TTcTAcG19All0
ORF1ab/nsp3848S848delTCT---88B.1.5760.007253
ORF1ab/nsp3848S848delTCT---77AY.250.000042
ORF1ab/nsp3848S848delTCT---77AY.390.000173
ORF1ab/nsp3848S848ATctGct77AY.420.000282
ORF1ab/nsp3848S848ATctGct55AY.40.000008
ORF1ab/nsp3848S848YtCttAt55AY.90.000338
ORF1ab/nsp3848S848delTCT---55B.1.3750.004098
ORF1ab/nsp3848S848delTCT---55B.1.617.20.000019
ORF1ab/nsp3848S848del1tcTtc-24All0
ORF1ab/nsp3848S848del1TcTAc-14All0
ORF1ab/nsp3848S848del1Tct-ct14All0
ORF1ab/nsp3848S848delTCT---44AY.1000.000184
ORF1ab/nsp3848S848delTCT---44AY.30.00004
ORF1ab/nsp3848S848delTCT---44AY.40.000006
ORF1ab/nsp3848S848StcTtcC44AY.470.000124
ORF1ab/nsp3848S848delTCT---44AY.470.000124
ORF1ab/nsp3848S848ATctGct44AY.5.30.00135
ORF1ab/nsp3848S848delTCT---44AY.750.000224
ORF1ab/nsp3848S848YtCttAt44AY.80.002424
ORF1ab/nsp3848S848YtCttAt44B.10.000037
ORF1ab/nsp3848S848GTCTGGC44B.1.10.000073
ORF1ab/nsp3848S848FtCttTt44B.1.1.70.000004
ORF1ab/nsp3848S848CtCttGt34B.1.1.70.000003
ORF1ab/nsp3848S848StcTtcC34B.1.1.70.000003
ORF1ab/nsp3848S848CtCTtGC14B.1.1.70.000001
ORF1ab/nsp3848S848StcTtcA14B.1.1.70.000001
ORF1ab/nsp3848S848del2TCt--t33All0.000001
ORF1ab/nsp3848S848delTCT---33AY.1130.000427
ORF1ab/nsp3848S848delTCT---33AY.1190.000106
ORF1ab/nsp3848S848ATctGct33AY.50.000062
ORF1ab/nsp3848S848StcTtcC33AY.5.40.00083
ORF1ab/nsp3848S848delTCT---33AY.950.002283
ORF1ab/nsp3848S848ATctGct33AY.98.10.000145
ORF1ab/nsp3848S848FtCttTt33B.10.000027
ORF1ab/nsp3848S848PTctCct33B.10.000027
ORF1ab/nsp3848S848StcTtcC23B.10.000018
ORF1ab/nsp3848S848StcTtcG13B.10.000009
ORF1ab/nsp3848S848StcTtcC33B.1.10.000054
ORF1ab/nsp3848S848GTCtGGt23B.1.1.70.000002
ORF1ab/nsp3848S848GTCTGGC13B.1.1.70.000001
ORF1ab/nsp3848S848delTCT---33B.1.360.000438
ORF1ab/nsp3848S848TTctAct33B.1.4270.000151
ORF1ab/nsp3848S848delTCT---33B.1.5250.000339
ORF1ab/nsp3848S848CtCttGt33B.1.617.10.000387
ORF1ab/nsp3848S848ATctGct33B.1.617.20.000011
ORF1ab/nsp3848S848delTCT---33B.1.6210.000266
ORF1ab/nsp3848S848delTCT---22AY.10.000791
ORF1ab/nsp3848S848StcTtcG12AY.1030.000006
ORF1ab/nsp3848S848StcTtcC12AY.1030.000006
ORF1ab/nsp3848S848YtCttAt22AY.1200.000074
ORF1ab/nsp3848S848FtCttTt22AY.250.000012
ORF1ab/nsp3848S848StcTtcC22AY.250.000012
ORF1ab/nsp3848S848delTCT---22AY.260.000057
ORF1ab/nsp3848S848ATctGct22AY.340.000194
ORF1ab/nsp3848S848PTctCct22AY.40.000003
ORF1ab/nsp3848S848PTcTCcC12AY.440.000006
ORF1ab/nsp3848S848PTctCct12AY.440.000006
ORF1ab/nsp3848S848StcTtcC22AY.460.000208
ORF1ab/nsp3848S848ATctGct22AY.46.60.000144
ORF1ab/nsp3848S848ATctGct22AY.5.40.000553
ORF1ab/nsp3848S848delTCT---22AY.540.000191
ORF1ab/nsp3848S848YtCttAt22AY.580.001815
ORF1ab/nsp3848S848del1tcTtc-12B.10.000009
ORF1ab/nsp3848S848del1Tct-ct12B.10.000009
ORF1ab/nsp3848S848YtCttAt22B.1.1.70.000002
ORF1ab/nsp3848S848delTCT---22B.1.177.730.001133
ORF1ab/nsp3848S848TTctAct22B.1.3510.000059
ORF1ab/nsp3848S848ATctGct12B.1.3670.000792
ORF1ab/nsp3848S848ATcTGcC12B.1.3670.000792
ORF1ab/nsp3848S848delTCT---22B.1.4560.006536
ORF1ab/nsp3848S848delTCT---22B.1.5600.009259
ORF1ab/nsp3848S848delTCT---22B.1.6200.001892
ORF1ab/nsp3848S848StcTtcA110.055556
ORF1ab/nsp3848S848del2TCt--t11A0.000387
ORF1ab/nsp3848S848delTCT---11A.2.20.001689
ORF1ab/nsp3848S848delTCT---11A.23.10.000704
ORF1ab/nsp3848S848ATcTGcC11A.270.001656
ORF1ab/nsp3848S848delTCT---11AH.30.003802
ORF1ab/nsp3848S848LTCTCTA11All0
ORF1ab/nsp3848S848DTCtGAt11All0
ORF1ab/nsp3848S848NTCTAAC11All0
ORF1ab/nsp3848S848ATctGct11AW.10.003049
ORF1ab/nsp3848S848StcTtcA11AY.1000.000046
ORF1ab/nsp3848S848StcTtcC11AY.1020.000027
ORF1ab/nsp3848S848FtCttTt11AY.1030.000006
ORF1ab/nsp3848S848TTctAct11AY.1030.000006
ORF1ab/nsp3848S848CtCttGt11AY.1030.000006
ORF1ab/nsp3848S848ATctGct11AY.1110.000183
ORF1ab/nsp3848S848CtCttGt11AY.1180.000063
ORF1ab/nsp3848S848StcTtcG11AY.1180.000063
ORF1ab/nsp3848S848StcTtcC11AY.1190.000035
ORF1ab/nsp3848S848delTCT---11AY.1200.000037
ORF1ab/nsp3848S848delTCT---11AY.120.10.000321
ORF1ab/nsp3848S848ATctGct11AY.120.20.001285
ORF1ab/nsp3848S848delTCT---11AY.16.10.00047
ORF1ab/nsp3848S848YtCttAt11AY.170.008197
ORF1ab/nsp3848S848CtCttGt11AY.200.000039
ORF1ab/nsp3848S848delTCT---11AY.200.000039
ORF1ab/nsp3848S848StcTtcC11AY.230.00007
ORF1ab/nsp3848S848ATctGct11AY.230.00007
ORF1ab/nsp3848S848ATctGct11AY.250.000006
ORF1ab/nsp3848S848FtCttTt11AY.260.000028
ORF1ab/nsp3848S848FtCttTt11AY.330.000067
ORF1ab/nsp3848S848StcTtcC11AY.340.000097
ORF1ab/nsp3848S848CtCttGt11AY.390.000025
ORF1ab/nsp3848S848ATctGct11AY.39.10.00004
ORF1ab/nsp3848S848FtCttTt11AY.40.000002
ORF1ab/nsp3848S848ATctGct11AY.4.20.000022
ORF1ab/nsp3848S848StcTtcC11AY.4.20.000022
ORF1ab/nsp3848S848GTCTGGC11AY.4.2.10.000149
ORF1ab/nsp3848S848StcTtcC11AY.4.40.000409
ORF1ab/nsp3848S848delTCT---11AY.4.50.000107
ORF1ab/nsp3848S848delTCT---11AY.430.000004
ORF1ab/nsp3848S848CtCttGt11AY.430.000004
ORF1ab/nsp3848S848del2TCt--t11AY.440.000006
ORF1ab/nsp3848S848CtCttGt11AY.440.000006
ORF1ab/nsp3848S848ATctGct11AY.440.000006
ORF1ab/nsp3848S848ATctGct11AY.46.40.000165
ORF1ab/nsp3848S848ATctGct11AY.75.10.00018
ORF1ab/nsp3848S848YtCttAt11AY.870.000833
ORF1ab/nsp3848S848ATctGct11AY.9.20.000037
ORF1ab/nsp3848S848StcTtcC11AY.9.20.000037
ORF1ab/nsp3848S848ATctGct11AY.980.000079
ORF1ab/nsp3848S848StcTtcC11B0.000128
ORF1ab/nsp3848S848del2TCt--t11B.10.000009
ORF1ab/nsp3848S848CtCttGt11B.10.000009
ORF1ab/nsp3848S848GTCTGGC11B.10.000009
ORF1ab/nsp3848S848FtCttTt11B.1.10.000018
ORF1ab/nsp3848S848TTcTAcG11B.1.10.000018
ORF1ab/nsp3848S848ATctGct11B.1.10.000018
ORF1ab/nsp3848S848delTCT---11B.1.1.1420.017544
ORF1ab/nsp3848S848PTctCct11B.1.1.1610.003534
ORF1ab/nsp3848S848delTCT---11B.1.1.2790.001121
ORF1ab/nsp3848S848GTCTGGC11B.1.1.330.000421
ORF1ab/nsp3848S848delTCT---11B.1.1.3650.005587
ORF1ab/nsp3848S848PTctCct11B.1.1.3720.000689
ORF1ab/nsp3848S848StcTtcC11B.1.1.470.005348
ORF1ab/nsp3848S848delTCT---11B.1.1.5190.00004
ORF1ab/nsp3848S848StcTtcC11B.1.1.5190.00004
ORF1ab/nsp3848S848FtCttTt11B.1.1.5260.003546
ORF1ab/nsp3848S848TTcTAcA11B.1.1.5280.004808
ORF1ab/nsp3848S848DTCtGAt11B.1.1.70.000001
ORF1ab/nsp3848S848del1tcTtc-11B.1.1.70.000001
ORF1ab/nsp3848S848YtCttAt11B.1.1.700.000341
ORF1ab/nsp3848S848FtCttTt11B.1.1280.000635
ORF1ab/nsp3848S848delTCT---11B.1.1450.052632
ORF1ab/nsp3848S848StcTtcC11B.1.1570.002985
ORF1ab/nsp3848S848StcTtcC11B.1.1600.000031
ORF1ab/nsp3848S848PTctCct11B.1.1600.000031
ORF1ab/nsp3848S848StcTtcA11B.1.160.140.002119
ORF1ab/nsp3848S848ATctGct11B.1.177.150.000631
ORF1ab/nsp3848S848delTCT---11B.1.177.160.000664
ORF1ab/nsp3848S848delTCT---11B.1.177.170.000821
ORF1ab/nsp3848S848delTCT---11B.1.177.180.00116
ORF1ab/nsp3848S848delTCT---11B.1.177.510.004566
ORF1ab/nsp3848S848delTCT---11B.1.177.70.000165
ORF1ab/nsp3848S848delTCT---11B.1.177.80.000752
ORF1ab/nsp3848S848delTCT---11B.1.177.810.000189
ORF1ab/nsp3848S848del1TcTAc-11B.1.20.000009
ORF1ab/nsp3848S848FtCttTt11B.1.20.000009
ORF1ab/nsp3848S848delTCT---11B.1.20.000009
ORF1ab/nsp3848S848delTCT---11B.1.2140.003663
ORF1ab/nsp3848S848StcTtcC11B.1.2210.000071
ORF1ab/nsp3848S848FtCttTt11B.1.2210.000071
ORF1ab/nsp3848S848YtCttAt11B.1.2430.00007
ORF1ab/nsp3848S848StcTtcC11B.1.2580.000067
ORF1ab/nsp3848S848delTCT---11B.1.3190.003049
ORF1ab/nsp3848S848GTCTGGC11B.1.3510.00003
ORF1ab/nsp3848S848delTCT---11B.1.3510.00003
ORF1ab/nsp3848S848CtCttGt11B.1.351.20.000303
ORF1ab/nsp3848S848StcTtcC11B.1.360.000146
ORF1ab/nsp3848S848FtCttTt11B.1.36.100.004785
ORF1ab/nsp3848S848FtCttTt11B.1.36.290.000517
ORF1ab/nsp3848S848delTCT---11B.1.36.290.000517
ORF1ab/nsp3848S848StcTtcC11B.1.3910.001127
ORF1ab/nsp3848S848delTCT---11B.1.416.10.001563
ORF1ab/nsp3848S848StcTtcA11B.1.4290.000024
ORF1ab/nsp3848S848ATctGct11B.1.4290.000024
ORF1ab/nsp3848S848YtCttAt11B.1.4530.003236
ORF1ab/nsp3848S848delTCT---11B.1.4650.003802
ORF1ab/nsp3848S848PTctCct11B.1.4870.019608
ORF1ab/nsp3848S848PTctCct11B.1.4970.000315
ORF1ab/nsp3848S848YtCttAt11B.1.5260.000024
ORF1ab/nsp3848S848ATctGct11B.1.5260.000024
ORF1ab/nsp3848S848delTCT---11B.1.5330.009615
ORF1ab/nsp3848S848delTCT---11B.1.5370.02
ORF1ab/nsp3848S848StcTtcC11B.1.5640.000426
ORF1ab/nsp3848S848StcTtcC11B.1.5650.00081
ORF1ab/nsp3848S848FtCttTt11B.1.5820.000491
ORF1ab/nsp3848S848FtCttTt11B.1.5960.000087
ORF1ab/nsp3848S848YtCttAt11B.1.5990.00365
ORF1ab/nsp3848S848NTCTAAC11B.1.617.10.000129
ORF1ab/nsp3848S848TTctAct11B.1.617.20.000004
ORF1ab/nsp3848S848LTCTCTA11B.1.617.20.000004
ORF1ab/nsp3848S848YtCttAt11B.1.617.20.000004
ORF1ab/nsp3848S848delTCT---11B.1.617.30.002985
ORF1ab/nsp3848S848StcTtcG11B.1.617.30.002985
ORF1ab/nsp3848S848StcTtcC11B.1.6210.000089
ORF1ab/nsp3848S848delTCT---11B.1.6300.005236
ORF1ab/nsp3848S848CtCttGt11B.1.6370.000073
ORF1ab/nsp3848S848delTCT---11B.150.017544
ORF1ab/nsp3848S848ATctGct11B.4.50.011905
ORF1ab/nsp3848S848CtCttGt11B.60.00091
ORF1ab/nsp3848S848FtCttTt11D.20.000075
ORF1ab/nsp3848S848ATctGct11P.10.000016
ORF1ab/nsp3848S848GTCTGGC11P.10.000016
ORF1ab/nsp3848S848GTCTGGC11P.1.10.000318
ORF1ab/nsp3848S848StcTtcC11P.1.120.000484
ORF1ab/nsp3848S848CtCttGt11P.1.130.000898
ORF1ab/nsp3848S848ATctGct11Q.40.000455