CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 847

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp3	847	T847T	T1665T	syn	acT	acA	7270	7189	0.988858	5258-5260
ORF1ab/nsp3	847	T847T	T1665T	syn	acT	acC	7270	62	0.0085282	5258-5260
ORF1ab/nsp3	847	T847T	T1665T	syn	acT	acG	7270	19	0.00261348	5258-5260
ORF1ab/nsp3	847	T847I	T1665I	nonsyn	aCt	aTt	1601	1600	0.999375	5258-5260
ORF1ab/nsp3	847	T847I	T1665I	nonsyn	aCT	aTC	1601	1	0.00062461	5258-5260
ORF1ab/nsp3	847	T847del1	T1665del1	del	acT	ac-	352	350	0.994318	5258-5260
ORF1ab/nsp3	847	T847del1	T1665del1	del	aCt	a-t	352	2	0.00568182	5258-5260
ORF1ab/nsp3	847	T847del	T1665del	del	ACT	---	43	43	1	5258-5260
ORF1ab/nsp3	847	T847N	T1665N	nonsyn	aCt	aAt	13	13	1	5258-5260
ORF1ab/nsp3	847	T847A	T1665A	nonsyn	Act	Gct	10	10	1	5258-5260
ORF1ab/nsp3	847	T847S	T1665S	nonsyn	Act	Tct	8	6	0.75	5258-5260
ORF1ab/nsp3	847	T847S	T1665S	nonsyn	aCt	aGt	8	1	0.125	5258-5260
ORF1ab/nsp3	847	T847S	T1665S	nonsyn	AcT	TcC	8	1	0.125	5258-5260
ORF1ab/nsp3	847	T847del2	T1665del2	del	ACt	--t	2	2	1	5258-5260
ORF1ab/nsp3	847	T847P	T1665P	nonsyn	Act	Cct	1	1	1	5258-5260
ORF1ab/nsp3	847	T847M	T1665M	nonsyn	aCT	aTG	1	1	1	5258-5260

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp3	847	T847T	acT	acA	7189	7270	All	0.001375
ORF1ab/nsp3	847	T847T	acT	acC	62	7270	All	0.000012
ORF1ab/nsp3	847	T847T	acT	acG	19	7270	All	0.000004
ORF1ab/nsp3	847	T847I	aCt	aTt	1600	1601	All	0.000306
ORF1ab/nsp3	847	T847I	aCT	aTC	1	1601	All	0
ORF1ab/nsp3	847	T847T	acT	acA	1140	1153	B.1.1.7	0.001021
ORF1ab/nsp3	847	T847T	acT	acC	8	1153	B.1.1.7	0.000007
ORF1ab/nsp3	847	T847T	acT	acG	5	1153	B.1.1.7	0.000004
ORF1ab/nsp3	847	T847T	acT	acA	514	516	AY.43	0.002277
ORF1ab/nsp3	847	T847T	acT	acG	1	516	AY.43	0.000004
ORF1ab/nsp3	847	T847T	acT	acC	1	516	AY.43	0.000004
ORF1ab/nsp3	847	T847T	acT	acA	375	375	AY.12	0.118521
ORF1ab/nsp3	847	T847del1	acT	ac-	350	352	All	0.000067
ORF1ab/nsp3	847	T847del1	aCt	a-t	2	352	All	0
ORF1ab/nsp3	847	T847T	acT	acA	349	351	B.1	0.003197
ORF1ab/nsp3	847	T847T	acT	acC	2	351	B.1	0.000018
ORF1ab/nsp3	847	T847I	aCt	aTt	316	316	AY.4	0.000492
ORF1ab/nsp3	847	T847T	acT	acA	296	296	AY.39	0.007315
ORF1ab/nsp3	847	T847T	acT	acA	259	266	AY.4	0.000403
ORF1ab/nsp3	847	T847T	acT	acC	6	266	AY.4	0.000009
ORF1ab/nsp3	847	T847T	acT	acG	1	266	AY.4	0.000002
ORF1ab/nsp3	847	T847T	acT	acA	260	264	B.1.617.2	0.000979
ORF1ab/nsp3	847	T847T	acT	acC	3	264	B.1.617.2	0.000011
ORF1ab/nsp3	847	T847T	acT	acG	1	264	B.1.617.2	0.000004
ORF1ab/nsp3	847	T847T	acT	acA	234	234	B.1.329	0.142163
ORF1ab/nsp3	847	T847T	acT	acA	230	232	B.1.2	0.002025
ORF1ab/nsp3	847	T847T	acT	acC	2	232	B.1.2	0.000018
ORF1ab/nsp3	847	T847I	aCt	aTt	228	228	B.1.1.7	0.000204
ORF1ab/nsp3	847	T847T	acT	acA	186	187	AY.44	0.001132
ORF1ab/nsp3	847	T847T	acT	acC	1	187	AY.44	0.000006
ORF1ab/nsp3	847	T847T	acT	acA	158	158	AY.5	0.003263
ORF1ab/nsp3	847	T847T	acT	acA	152	152	B.1.1	0.002757
ORF1ab/nsp3	847	T847T	acT	acA	143	144	AY.25	0.00086
ORF1ab/nsp3	847	T847T	acT	acC	1	144	AY.25	0.000006
ORF1ab/nsp3	847	T847T	acT	acA	141	142	AY.103	0.000875
ORF1ab/nsp3	847	T847T	acT	acG	1	142	AY.103	0.000006
ORF1ab/nsp3	847	T847I	aCt	aTt	138	138	B.1.544	0.831325
ORF1ab/nsp3	847	T847T	acT	acA	137	137	B	0.01751
ORF1ab/nsp3	847	T847T	acT	acA	113	113	AY.121	0.015291
ORF1ab/nsp3	847	T847T	acT	acA	102	104	B.1.177	0.001343
ORF1ab/nsp3	847	T847T	acT	acC	2	104	B.1.177	0.000026
ORF1ab/nsp3	847	T847I	aCt	aTt	97	98	B.1.617.2	0.000365
ORF1ab/nsp3	847	T847I	aCT	aTC	1	98	B.1.617.2	0.000004
ORF1ab/nsp3	847	T847T	acT	acA	93	96	AY.102	0.002466
ORF1ab/nsp3	847	T847T	acT	acC	3	96	AY.102	0.00008
ORF1ab/nsp3	847	T847del1	acT	ac-	92	92	B.1.1.7	0.000082
ORF1ab/nsp3	847	T847T	acT	acA	85	86	AY.42	0.00342
ORF1ab/nsp3	847	T847T	acT	acC	1	86	AY.42	0.00004
ORF1ab/nsp3	847	T847I	aCt	aTt	76	76	Y.1	0.974359
ORF1ab/nsp3	847	T847T	acT	acA	73	73	B.1.617.1	0.009414
ORF1ab/nsp3	847	T847I	aCt	aTt	70	70	B.1.1.519	0.00278
ORF1ab/nsp3	847	T847del1	acT	ac-	67	67	B.1.617.1	0.008641
ORF1ab/nsp3	847	T847T	acT	acA	66	66	B.1.429	0.001553
ORF1ab/nsp3	847	T847T	acT	acA	59	59	AY.3	0.000587
ORF1ab/nsp3	847	T847T	acT	acA	54	54	B.1.160	0.001684
ORF1ab/nsp3	847	T847del1	acT	ac-	45	46	B.1	0.000412
ORF1ab/nsp3	847	T847del1	aCt	a-t	1	46	B.1	0.000009
ORF1ab/nsp3	847	T847T	acT	acA	44	44	AY.9.2	0.001616
ORF1ab/nsp3	847	T847del	ACT	---	43	43	All	0.000008
ORF1ab/nsp3	847	T847T	acT	acA	43	43	AY.26	0.001217
ORF1ab/nsp3	847	T847del1	acT	ac-	43	43	AY.44	0.000262
ORF1ab/nsp3	847	T847I	aCt	aTt	43	43	B.1.637	0.003142
ORF1ab/nsp3	847	T847T	acT	acA	39	39	B.1.351	0.001159
ORF1ab/nsp3	847	T847T	acT	acA	39	39	Q.4	0.017735
ORF1ab/nsp3	847	T847T	acT	acA	34	35	AY.100	0.001564
ORF1ab/nsp3	847	T847T	acT	acG	1	35	AY.100	0.000046
ORF1ab/nsp3	847	T847T	acT	acA	35	35	B.1.177.21	0.002676
ORF1ab/nsp3	847	T847T	acT	acA	35	35	B.1.258.17	0.003639
ORF1ab/nsp3	847	T847T	acT	acA	35	35	B.1.526	0.000823
ORF1ab/nsp3	847	T847T	acT	acA	34	34	AY.75	0.001905
ORF1ab/nsp3	847	T847T	acT	acA	33	33	AY.92	0.00948
ORF1ab/nsp3	847	T847T	acT	acA	32	32	AY.23	0.002232
ORF1ab/nsp3	847	T847T	acT	acA	30	31	AY.119	0.001059
ORF1ab/nsp3	847	T847T	acT	acC	1	31	AY.119	0.000035
ORF1ab/nsp3	847	T847I	aCt	aTt	30	30	B.1.177.86	0.005504
ORF1ab/nsp3	847	T847T	acT	acA	30	30	B.1.427	0.001515
ORF1ab/nsp3	847	T847T	acT	acA	29	29	AY.120	0.001078
ORF1ab/nsp3	847	T847T	acT	acA	29	29	AY.46	0.003018
ORF1ab/nsp3	847	T847T	acT	acA	29	29	B.1.243	0.002018
ORF1ab/nsp3	847	T847T	acT	acA	29	29	B.1.596	0.002527
ORF1ab/nsp3	847	T847T	acT	acA	28	28	AY.16.1	0.013158
ORF1ab/nsp3	847	T847T	acT	acA	28	28	AY.33	0.00187
ORF1ab/nsp3	847	T847T	acT	acA	28	28	B.1.1.335	0.363636
ORF1ab/nsp3	847	T847I	aCt	aTt	28	28	B.1.2	0.000247
ORF1ab/nsp3	847	T847T	acT	acA	26	26	AY.98.1	0.001259
ORF1ab/nsp3	847	T847I	aCt	aTt	24	24	B.1.36	0.003502
ORF1ab/nsp3	847	T847T	acT	acA	23	23	AY.46.4	0.003784
ORF1ab/nsp3	847	T847T	acT	acA	20	23	P.1	0.000315
ORF1ab/nsp3	847	T847T	acT	acG	2	23	P.1	0.000032
ORF1ab/nsp3	847	T847T	acT	acC	1	23	P.1	0.000016
ORF1ab/nsp3	847	T847I	aCt	aTt	21	21	AY.44	0.000128
ORF1ab/nsp3	847	T847T	acT	acA	21	21	B.1.1.519	0.000834
ORF1ab/nsp3	847	T847I	aCt	aTt	21	21	B.1.160.28	0.061404
ORF1ab/nsp3	847	T847I	aCt	aTt	21	21	P.1	0.000331
ORF1ab/nsp3	847	T847T	acT	acA	16	20	AY.118	0.001002
ORF1ab/nsp3	847	T847T	acT	acC	4	20	AY.118	0.000251
ORF1ab/nsp3	847	T847I	aCt	aTt	20	20	AY.36	0.002964
ORF1ab/nsp3	847	T847T	acT	acA	19	19	AY.98	0.001501
ORF1ab/nsp3	847	T847T	acT	acA	19	19	B.1.517	0.008113
ORF1ab/nsp3	847	T847I	aCt	aTt	18	18	AY.10	0.009539
ORF1ab/nsp3	847	T847T	acT	acA	18	18	AY.20	0.0007
ORF1ab/nsp3	847	T847T	acT	acA	18	18	AY.46.6	0.0013
ORF1ab/nsp3	847	T847T	acT	acA	18	18	P.1.1	0.005718
ORF1ab/nsp3	847	T847I	aCt	aTt	17	17	AY.103	0.000106
ORF1ab/nsp3	847	T847T	acT	acA	17	17	AY.4.5	0.001827
ORF1ab/nsp3	847	T847T	acT	acA	17	17	AY.47	0.000529
ORF1ab/nsp3	847	T847T	acT	acA	17	17	AY.60	0.015947
ORF1ab/nsp3	847	T847I	aCt	aTt	17	17	B.1.1	0.000308
ORF1ab/nsp3	847	T847I	aCt	aTt	17	17	B.1.1.222	0.003468
ORF1ab/nsp3	847	T847I	aCt	aTt	17	17	B.1.1.37	0.003279
ORF1ab/nsp3	847	T847I	aCt	aTt	17	17	B.1.526	0.0004
ORF1ab/nsp3	847	T847T	acT	acC	9	16	AY.99.2	0.000829
ORF1ab/nsp3	847	T847T	acT	acA	7	16	AY.99.2	0.000645
ORF1ab/nsp3	847	T847I	aCt	aTt	16	16	B.1	0.000147
ORF1ab/nsp3	847	T847T	acT	acA	15	16	B.1.177.7	0.002473
ORF1ab/nsp3	847	T847T	acT	acC	1	16	B.1.177.7	0.000165
ORF1ab/nsp3	847	T847I	aCt	aTt	16	16	B.1.351.2	0.004841
ORF1ab/nsp3	847	T847T	acT	acA	15	16	B.1.637	0.001096
ORF1ab/nsp3	847	T847T	acT	acC	1	16	B.1.637	0.000073
ORF1ab/nsp3	847	T847del1	acT	ac-	15	15	AY.103	0.000093
ORF1ab/nsp3	847	T847T	acT	acA	14	14	AY.106	0.004689
ORF1ab/nsp3	847	T847T	acT	acA	14	14	AY.117	0.001183
ORF1ab/nsp3	847	T847I	aCt	aTt	14	14	AY.43	0.000062
ORF1ab/nsp3	847	T847T	acT	acA	14	14	AY.54	0.001335
ORF1ab/nsp3	847	T847T	acT	acA	14	14	AY.7.1	0.001578
ORF1ab/nsp3	847	T847T	acT	acA	14	14	Q.2	0.008589
ORF1ab/nsp3	847	T847N	aCt	aAt	13	13	All	0.000002
ORF1ab/nsp3	847	T847T	acT	acA	13	13	AY.52	0.010586
ORF1ab/nsp3	847	T847T	acT	acA	13	13	B.1.234	0.001715
ORF1ab/nsp3	847	T847T	acT	acA	13	13	B.1.258	0.000865
ORF1ab/nsp3	847	T847T	acT	acA	12	12	AA.7	0.110092
ORF1ab/nsp3	847	T847I	aCt	aTt	12	12	AY.102	0.000318
ORF1ab/nsp3	847	T847T	acT	acA	12	12	AY.9	0.000811
ORF1ab/nsp3	847	T847del1	acT	ac-	12	12	B.1.1	0.000218
ORF1ab/nsp3	847	T847del	ACT	---	12	12	B.1.1.7	0.000011
ORF1ab/nsp3	847	T847I	aCt	aTt	12	12	B.1.221	0.000852
ORF1ab/nsp3	847	T847T	acT	acA	10	12	B.1.221	0.00071
ORF1ab/nsp3	847	T847T	acT	acC	1	12	B.1.221	0.000071
ORF1ab/nsp3	847	T847T	acT	acG	1	12	B.1.221	0.000071
ORF1ab/nsp3	847	T847T	acT	acA	12	12	B.1.367	0.009509
ORF1ab/nsp3	847	T847T	acT	acA	12	12	B.1.525	0.001358
ORF1ab/nsp3	847	T847T	acT	acA	12	12	Q.3	0.00174
ORF1ab/nsp3	847	T847T	acT	acA	11	11	AY.36	0.00163
ORF1ab/nsp3	847	T847T	acT	acA	11	11	AY.75.1	0.001983
ORF1ab/nsp3	847	T847T	acT	acA	11	11	AY.84	0.004812
ORF1ab/nsp3	847	T847T	acT	acA	11	11	AY.9.1	0.000921
ORF1ab/nsp3	847	T847T	acT	acA	11	11	B.1.177.15	0.00694
ORF1ab/nsp3	847	T847T	acT	acA	11	11	B.1.240	0.002371
ORF1ab/nsp3	847	T847A	Act	Gct	10	10	All	0.000002
ORF1ab/nsp3	847	T847I	aCt	aTt	10	10	AY.25	0.00006
ORF1ab/nsp3	847	T847T	acT	acA	10	10	AY.4.4	0.004092
ORF1ab/nsp3	847	T847T	acT	acA	10	10	AY.5.3	0.003374
ORF1ab/nsp3	847	T847T	acT	acA	10	10	AY.5.4	0.002767
ORF1ab/nsp3	847	T847T	acT	acA	10	10	AY.65	0.00533
ORF1ab/nsp3	847	T847T	acT	acA	10	10	B.1.1.28	0.003112
ORF1ab/nsp3	847	T847T	acT	acC	7	10	B.1.1.37	0.00135
ORF1ab/nsp3	847	T847T	acT	acA	3	10	B.1.1.37	0.000579
ORF1ab/nsp3	847	T847T	acT	acA	10	10	B.1.1.50	0.006789
ORF1ab/nsp3	847	T847T	acT	acA	10	10	B.1.177.73	0.005663
ORF1ab/nsp3	847	T847I	aCt	aTt	10	10	B.1.351	0.000297
ORF1ab/nsp3	847	T847I	aCt	aTt	10	10	C.1	0.023923
ORF1ab/nsp3	847	T847T	acT	acA	9	9	AD.2	0.001971
ORF1ab/nsp3	847	T847I	aCt	aTt	9	9	AY.26	0.000255
ORF1ab/nsp3	847	T847I	aCt	aTt	9	9	AY.3	0.00009
ORF1ab/nsp3	847	T847T	acT	acA	9	9	AY.34	0.000873
ORF1ab/nsp3	847	T847T	acT	acA	9	9	AY.70	0.001877
ORF1ab/nsp3	847	T847T	acT	acA	9	9	B.1.1.486	0.014196
ORF1ab/nsp3	847	T847T	acT	acA	9	9	B.1.302	0.12
ORF1ab/nsp3	847	T847T	acT	acA	9	9	B.1.576	0.00816
ORF1ab/nsp3	847	T847S	Act	Tct	6	8	All	0.000001
ORF1ab/nsp3	847	T847S	aCt	aGt	1	8	All	0
ORF1ab/nsp3	847	T847S	AcT	TcC	1	8	All	0
ORF1ab/nsp3	847	T847T	acT	acA	8	8	AY.113	0.001139
ORF1ab/nsp3	847	T847I	aCt	aTt	8	8	AY.29	0.000126
ORF1ab/nsp3	847	T847T	acT	acA	8	8	AY.37	0.002528
ORF1ab/nsp3	847	T847I	aCt	aTt	8	8	AY.42	0.000322
ORF1ab/nsp3	847	T847T	acT	acA	8	8	AY.6	0.000329
ORF1ab/nsp3	847	T847I	aCt	aTt	8	8	B.1.177.54	0.004851
ORF1ab/nsp3	847	T847I	aCt	aTt	8	8	B.1.241	0.006494
ORF1ab/nsp3	847	T847T	acT	acA	8	8	B.1.356	0.013817
ORF1ab/nsp3	847	T847T	acT	acA	8	8	C.37	0.000929
ORF1ab/nsp3	847	T847T	acT	acA	8	8	Q.1	0.001011
ORF1ab/nsp3	847	T847I	aCt	aTt	7	7	AY.106	0.002344
ORF1ab/nsp3	847	T847T	acT	acG	4	7	AY.39.1	0.000158
ORF1ab/nsp3	847	T847T	acT	acA	3	7	AY.39.1	0.000119
ORF1ab/nsp3	847	T847T	acT	acA	7	7	AY.45	0.000852
ORF1ab/nsp3	847	T847I	aCt	aTt	7	7	B.1.1.176	0.003076
ORF1ab/nsp3	847	T847T	acT	acA	7	7	B.1.258.11	0.002774
ORF1ab/nsp3	847	T847T	acT	acA	6	7	B.1.375	0.004918
ORF1ab/nsp3	847	T847T	acT	acC	1	7	B.1.375	0.00082
ORF1ab/nsp3	847	T847T	acT	acA	7	7	B.1.400	0.003003
ORF1ab/nsp3	847	T847I	aCt	aTt	7	7	L.2	0.079545
ORF1ab/nsp3	847	T847T	acT	acA	7	7	P.1.17	0.001132
ORF1ab/nsp3	847	T847del1	acT	ac-	6	6	AY.39	0.000148
ORF1ab/nsp3	847	T847T	acT	acA	6	6	AY.48	0.002791
ORF1ab/nsp3	847	T847T	acT	acA	6	6	B.1.1.318	0.001811
ORF1ab/nsp3	847	T847T	acT	acA	6	6	B.1.1.448	0.012195
ORF1ab/nsp3	847	T847T	acT	acA	5	6	B.1.1.528	0.024038
ORF1ab/nsp3	847	T847T	acT	acC	1	6	B.1.1.528	0.004808
ORF1ab/nsp3	847	T847T	acT	acA	6	6	B.1.177.4	0.001266
ORF1ab/nsp3	847	T847I	aCt	aTt	6	6	B.1.177.57	0.001686
ORF1ab/nsp3	847	T847T	acT	acA	6	6	B.1.177.65	0.003992
ORF1ab/nsp3	847	T847I	aCt	aTt	6	6	B.1.243	0.000418
ORF1ab/nsp3	847	T847T	acT	acA	6	6	B.1.311	0.001647
ORF1ab/nsp3	847	T847T	acT	acA	6	6	B.1.362	0.009245
ORF1ab/nsp3	847	T847T	acT	acA	6	6	B.1.369	0.001711
ORF1ab/nsp3	847	T847T	acT	acA	6	6	B.1.436	0.006173
ORF1ab/nsp3	847	T847T	acT	acA	6	6	B.55	0.017699
ORF1ab/nsp3	847	T847T	acT	acA	6	6	D.2	0.00045
ORF1ab/nsp3	847	T847I	aCt	aTt	6	6	Q.3	0.00087
ORF1ab/nsp3	847	T847I	aCt	aTt	5	5	AE.8	0.002445
ORF1ab/nsp3	847	T847T	acT	acA	5	5	AY.110	0.000563
ORF1ab/nsp3	847	T847T	acT	acA	5	5	AY.114	0.001156
ORF1ab/nsp3	847	T847T	acT	acA	5	5	AY.13	0.000805
ORF1ab/nsp3	847	T847T	acT	acA	5	5	AY.14	0.00044
ORF1ab/nsp3	847	T847del1	acT	ac-	5	5	AY.25	0.00003
ORF1ab/nsp3	847	T847I	aCt	aTt	5	5	AY.29.1	0.001103
ORF1ab/nsp3	847	T847I	aCt	aTt	5	5	AY.33	0.000334
ORF1ab/nsp3	847	T847I	aCt	aTt	5	5	AY.39	0.000124
ORF1ab/nsp3	847	T847T	acT	acA	4	5	AY.4.2	0.000087
ORF1ab/nsp3	847	T847T	acT	acC	1	5	AY.4.2	0.000022
ORF1ab/nsp3	847	T847I	aCt	aTt	5	5	AY.5	0.000103
ORF1ab/nsp3	847	T847T	acT	acA	5	5	AY.61	0.000524
ORF1ab/nsp3	847	T847T	acT	acA	5	5	AY.73	0.003327
ORF1ab/nsp3	847	T847T	acT	acA	5	5	AY.95	0.003805
ORF1ab/nsp3	847	T847T	acT	acA	5	5	B.1.1.192	0.011547
ORF1ab/nsp3	847	T847T	acT	acA	5	5	B.1.1.220	0.009294
ORF1ab/nsp3	847	T847T	acT	acA	5	5	B.1.1.434	0.001743
ORF1ab/nsp3	847	T847T	acT	acA	5	5	B.1.258.14	0.004902
ORF1ab/nsp3	847	T847T	acT	acA	5	5	B.1.359	0.113636
ORF1ab/nsp3	847	T847T	acT	acA	5	5	B.1.462	0.036232
ORF1ab/nsp3	847	T847T	acT	acA	5	5	B.1.516	0.009785
ORF1ab/nsp3	847	T847del1	acT	ac-	5	5	B.1.576	0.004533
ORF1ab/nsp3	847	T847T	acT	acA	4	5	B.1.621	0.000354
ORF1ab/nsp3	847	T847T	acT	acC	1	5	B.1.621	0.000089
ORF1ab/nsp3	847	T847T	acT	acA	5	5	C.1	0.011962
ORF1ab/nsp3	847	T847T	acT	acA	5	5	P.1.12	0.00242
ORF1ab/nsp3	847	T847T	acT	acA	5	5	P.1.15	0.001162
ORF1ab/nsp3	847	T847T	acT	acA	4	4	A	0.001548
ORF1ab/nsp3	847	T847T	acT	acA	4	4	AY.1	0.001583
ORF1ab/nsp3	847	T847del1	acT	ac-	4	4	AY.100	0.000184
ORF1ab/nsp3	847	T847T	acT	acA	4	4	AY.111	0.000733
ORF1ab/nsp3	847	T847del1	acT	ac-	4	4	AY.3	0.00004
ORF1ab/nsp3	847	T847T	acT	acA	4	4	AY.3.1	0.000341
ORF1ab/nsp3	847	T847T	acT	acA	4	4	AY.40	0.003857
ORF1ab/nsp3	847	T847I	aCt	aTt	4	4	AY.46.6	0.000289
ORF1ab/nsp3	847	T847del1	acT	ac-	4	4	AY.47	0.000124
ORF1ab/nsp3	847	T847T	acT	acA	4	4	AY.68	0.001095
ORF1ab/nsp3	847	T847I	aCt	aTt	4	4	AY.70	0.000834
ORF1ab/nsp3	847	T847N	aCt	aAt	4	4	B.1	0.000037
ORF1ab/nsp3	847	T847T	acT	acA	4	4	B.1.1.1	0.001307
ORF1ab/nsp3	847	T847T	acT	acA	4	4	B.1.1.311	0.001433
ORF1ab/nsp3	847	T847T	acT	acA	4	4	B.1.1.398	0.012903
ORF1ab/nsp3	847	T847T	acT	acA	2	4	B.1.1.409	0.005666
ORF1ab/nsp3	847	T847T	acT	acC	2	4	B.1.1.409	0.005666
ORF1ab/nsp3	847	T847T	acT	acA	4	4	B.1.1.420	0.004024
ORF1ab/nsp3	847	T847T	acT	acA	4	4	B.1.1.52	0.04878
ORF1ab/nsp3	847	T847T	acT	acA	4	4	B.1.1.53	0.054795
ORF1ab/nsp3	847	T847T	acT	acA	4	4	B.1.1.54	0.012085
ORF1ab/nsp3	847	T847T	acT	acA	4	4	B.1.110.3	0.002874
ORF1ab/nsp3	847	T847I	aCt	aTt	4	4	B.1.177	0.000053
ORF1ab/nsp3	847	T847T	acT	acA	4	4	B.1.177.12	0.000607
ORF1ab/nsp3	847	T847T	acT	acA	4	4	B.1.177.44	0.002076
ORF1ab/nsp3	847	T847T	acT	acA	4	4	B.1.349	0.002859
ORF1ab/nsp3	847	T847del1	acT	ac-	4	4	B.1.375	0.003279
ORF1ab/nsp3	847	T847T	acT	acA	4	4	B.1.390	0.042553
ORF1ab/nsp3	847	T847I	aCt	aTt	4	4	B.1.429	0.000094
ORF1ab/nsp3	847	T847T	acT	acA	4	4	B.1.577	0.002749
ORF1ab/nsp3	847	T847T	acT	acA	3	3	A.1	0.000846
ORF1ab/nsp3	847	T847T	acT	acA	3	3	A.2.5.2	0.004717
ORF1ab/nsp3	847	T847T	acT	acA	3	3	AY.107	0.001398
ORF1ab/nsp3	847	T847del1	acT	ac-	3	3	AY.113	0.000427
ORF1ab/nsp3	847	T847I	aCt	aTt	3	3	AY.113	0.000427
ORF1ab/nsp3	847	T847I	aCt	aTt	3	3	AY.119	0.000106
ORF1ab/nsp3	847	T847del1	acT	ac-	3	3	AY.119	0.000106
ORF1ab/nsp3	847	T847T	acT	acA	3	3	AY.120.2.1	0.001495
ORF1ab/nsp3	847	T847I	aCt	aTt	3	3	AY.3.1	0.000256
ORF1ab/nsp3	847	T847del	ACT	---	3	3	AY.4	0.000005
ORF1ab/nsp3	847	T847I	aCt	aTt	3	3	AY.4.5	0.000322
ORF1ab/nsp3	847	T847I	aCt	aTt	3	3	AY.47	0.000093
ORF1ab/nsp3	847	T847T	acT	acA	3	3	AY.56	0.004815
ORF1ab/nsp3	847	T847T	acT	acA	3	3	AY.58	0.002722
ORF1ab/nsp3	847	T847T	acT	acA	3	3	AY.7	0.000588
ORF1ab/nsp3	847	T847del1	acT	ac-	3	3	AY.75	0.000168
ORF1ab/nsp3	847	T847I	aCt	aTt	3	3	B.1.1.216	0.002671
ORF1ab/nsp3	847	T847T	acT	acA	3	3	B.1.1.377	0.004144
ORF1ab/nsp3	847	T847T	acT	acA	3	3	B.1.1.526	0.010638
ORF1ab/nsp3	847	T847T	acT	acA	3	3	B.1.160.16	0.002788
ORF1ab/nsp3	847	T847T	acT	acA	3	3	B.1.160.23	0.014493
ORF1ab/nsp3	847	T847T	acT	acA	3	3	B.1.177.43	0.004431
ORF1ab/nsp3	847	T847T	acT	acA	3	3	B.1.177.83	0.004444
ORF1ab/nsp3	847	T847T	acT	acA	3	3	B.1.258.4	0.010345
ORF1ab/nsp3	847	T847T	acT	acA	3	3	B.1.351.2	0.000908
ORF1ab/nsp3	847	T847T	acT	acA	3	3	B.1.409	0.002344
ORF1ab/nsp3	847	T847del1	acT	ac-	3	3	B.1.525	0.000339
ORF1ab/nsp3	847	T847T	acT	acA	3	3	B.1.568	0.003333
ORF1ab/nsp3	847	T847T	acT	acA	3	3	B.1.609	0.001438
ORF1ab/nsp3	847	T847del	ACT	---	3	3	B.1.617.2	0.000011
ORF1ab/nsp3	847	T847T	acT	acA	3	3	B.1.620	0.002838
ORF1ab/nsp3	847	T847T	acT	acA	3	3	C.2	0.048387
ORF1ab/nsp3	847	T847T	acT	acA	3	3	C.36.3	0.001702
ORF1ab/nsp3	847	T847T	acT	acA	3	3	P.1.16	0.001122
ORF1ab/nsp3	847	T847T	acT	acA	3	3	Q.5	0.050847
ORF1ab/nsp3	847	T847T	acT	acA	2	2	A.2.2	0.003378
ORF1ab/nsp3	847	T847T	acT	acA	2	2	A.3	0.004193
ORF1ab/nsp3	847	T847del2	ACt	--t	2	2	All	0
ORF1ab/nsp3	847	T847T	acT	acA	2	2	AP.1	0.003003
ORF1ab/nsp3	847	T847del1	acT	ac-	2	2	AY.1	0.000791
ORF1ab/nsp3	847	T847T	acT	acA	2	2	AY.105	0.001286
ORF1ab/nsp3	847	T847T	acT	acA	2	2	AY.108	0.002205
ORF1ab/nsp3	847	T847I	aCt	aTt	2	2	AY.110	0.000225
ORF1ab/nsp3	847	T847T	acT	acA	2	2	AY.116	0.000574
ORF1ab/nsp3	847	T847T	acT	acA	2	2	AY.116.1	0.000623
ORF1ab/nsp3	847	T847I	aCt	aTt	2	2	AY.118	0.000125
ORF1ab/nsp3	847	T847I	aCt	aTt	2	2	AY.23	0.000139
ORF1ab/nsp3	847	T847del	ACT	---	2	2	AY.25	0.000012
ORF1ab/nsp3	847	T847del1	acT	ac-	2	2	AY.26	0.000057
ORF1ab/nsp3	847	T847I	aCt	aTt	2	2	AY.27	0.000129
ORF1ab/nsp3	847	T847T	acT	acA	2	2	AY.29	0.000032
ORF1ab/nsp3	847	T847I	aCt	aTt	2	2	AY.30	0.000791
ORF1ab/nsp3	847	T847T	acT	acA	2	2	AY.38	0.000999
ORF1ab/nsp3	847	T847T	acT	acA	2	2	AY.4.2.1	0.000298
ORF1ab/nsp3	847	T847T	acT	acA	2	2	AY.41	0.000588
ORF1ab/nsp3	847	T847S	AcT	TcC	1	2	AY.44	0.000006
ORF1ab/nsp3	847	T847S	Act	Tct	1	2	AY.44	0.000006
ORF1ab/nsp3	847	T847T	acT	acA	2	2	AY.46.2	0.001271
ORF1ab/nsp3	847	T847T	acT	acA	2	2	AY.46.3	0.001867
ORF1ab/nsp3	847	T847I	aCt	aTt	2	2	AY.46.5	0.000397
ORF1ab/nsp3	847	T847T	acT	acA	2	2	AY.46.5	0.000397
ORF1ab/nsp3	847	T847I	aCt	aTt	2	2	AY.5.4	0.000553
ORF1ab/nsp3	847	T847T	acT	acA	2	2	AY.53	0.000575
ORF1ab/nsp3	847	T847del1	acT	ac-	2	2	AY.54	0.000191
ORF1ab/nsp3	847	T847T	acT	acA	2	2	AY.59	0.001059
ORF1ab/nsp3	847	T847T	acT	acA	2	2	AY.62	0.000871
ORF1ab/nsp3	847	T847I	aCt	aTt	2	2	AY.67	0.000929
ORF1ab/nsp3	847	T847I	aCt	aTt	2	2	AY.68	0.000547
ORF1ab/nsp3	847	T847I	aCt	aTt	2	2	AY.69	0.000373
ORF1ab/nsp3	847	T847T	acT	acA	2	2	AY.69	0.000373
ORF1ab/nsp3	847	T847T	acT	acA	2	2	AY.71	0.00095
ORF1ab/nsp3	847	T847I	aCt	aTt	2	2	AY.75.1	0.000361
ORF1ab/nsp3	847	T847T	acT	acA	2	2	AY.77	0.002255
ORF1ab/nsp3	847	T847T	acT	acA	2	2	AY.78	0.003082
ORF1ab/nsp3	847	T847T	acT	acA	2	2	AY.91	0.001461
ORF1ab/nsp3	847	T847T	acT	acA	2	2	AY.94	0.000885
ORF1ab/nsp3	847	T847del1	acT	ac-	2	2	AY.95	0.001522
ORF1ab/nsp3	847	T847T	acT	acA	2	2	AY.96	0.004149
ORF1ab/nsp3	847	T847I	aCt	aTt	2	2	AY.98	0.000158
ORF1ab/nsp3	847	T847N	aCt	aAt	2	2	B.1.1	0.000036
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.1.222	0.000408
ORF1ab/nsp3	847	T847I	aCt	aTt	2	2	B.1.1.240	0.00939
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.1.251	0.015873
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.1.263	0.003115
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.1.279	0.002242
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.1.383	0.125
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.1.39	0.001019
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.1.40	0.068966
ORF1ab/nsp3	847	T847I	aCt	aTt	2	2	B.1.1.432	0.002532
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.1.459	0.030769
ORF1ab/nsp3	847	T847I	aCt	aTt	2	2	B.1.1.63	0.000772
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.104	0.00738
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.160.14	0.004237
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.160.8	0.002577
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.177.17	0.001642
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.177.42	0.001789
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.177.57	0.000562
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.177.60	0.000437
ORF1ab/nsp3	847	T847del1	acT	ac-	2	2	B.1.177.73	0.001133
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.177.8	0.001505
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.179	0.007519
ORF1ab/nsp3	847	T847I	aCt	aTt	2	2	B.1.199	0.008264
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.214.2	0.001199
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.223	0.005556
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.241	0.001623
ORF1ab/nsp3	847	T847I	aCt	aTt	2	2	B.1.258	0.000133
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.258.16	0.003273
ORF1ab/nsp3	847	T847I	aCt	aTt	2	2	B.1.258.17	0.000208
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.320	0.002491
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.332	0.006993
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.351.3	0.001753
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.36	0.000292
ORF1ab/nsp3	847	T847del	ACT	---	2	2	B.1.36	0.000292
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.36.10	0.009569
ORF1ab/nsp3	847	T847I	aCt	aTt	2	2	B.1.36.26	0.005714
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.433	0.00639
ORF1ab/nsp3	847	T847I	aCt	aTt	2	2	B.1.438.1	0.000215
ORF1ab/nsp3	847	T847I	aCt	aTt	2	2	B.1.466.2	0.000782
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.575	0.000607
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.595	0.000522
ORF1ab/nsp3	847	T847A	Act	Gct	2	2	B.1.596	0.000174
ORF1ab/nsp3	847	T847del1	acT	ac-	2	2	B.1.617.2	0.000008
ORF1ab/nsp3	847	T847del1	acT	ac-	2	2	B.1.620	0.001892
ORF1ab/nsp3	847	T847I	aCt	aTt	2	2	B.1.621	0.000177
ORF1ab/nsp3	847	T847del	ACT	---	2	2	B.1.621	0.000177
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.1.630	0.010471
ORF1ab/nsp3	847	T847T	acT	acA	2	2	B.6	0.00182
ORF1ab/nsp3	847	T847T	acT	acA	2	2	C.16	0.002121
ORF1ab/nsp3	847	T847I	aCt	aTt	2	2	D.2	0.00015
ORF1ab/nsp3	847	T847I	aCt	aTt	2	2	N.5	0.003534
ORF1ab/nsp3	847	T847T	acT	acA	2	2	P.1.10	0.000539
ORF1ab/nsp3	847	T847I	aCt	aTt	2	2	P.1.14	0.000096
ORF1ab/nsp3	847	T847T	acT	acA	2	2	Q.7	0.002222
ORF1ab/nsp3	847	T847T	acT	acA	2	2	Q.8	0.00033
ORF1ab/nsp3	847	T847T	acT	acA	2	2	R.1	0.00018
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1		0.055556
ORF1ab/nsp3	847	T847N	aCt	aAt	1	1		0.055556
ORF1ab/nsp3	847	T847del	ACT	---	1	1	A.2.2	0.001689
ORF1ab/nsp3	847	T847T	acT	acG	1	1	A.2.4	0.003367
ORF1ab/nsp3	847	T847del1	acT	ac-	1	1	A.23.1	0.000704
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	AD.2	0.000219
ORF1ab/nsp3	847	T847T	acT	acA	1	1	AH.2	0.012048
ORF1ab/nsp3	847	T847del	ACT	---	1	1	AH.3	0.003802
ORF1ab/nsp3	847	T847M	aCT	aTG	1	1	All	0
ORF1ab/nsp3	847	T847P	Act	Cct	1	1	All	0
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	AN.1	0.02
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	AU.1	0.001266
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	AY.100	0.000046
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	AY.101	0.00049
ORF1ab/nsp3	847	T847T	acT	acA	1	1	AY.101	0.00049
ORF1ab/nsp3	847	T847T	acT	acA	1	1	AY.104	0.001984
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	AY.107	0.000466
ORF1ab/nsp3	847	T847A	Act	Gct	1	1	AY.107	0.000466
ORF1ab/nsp3	847	T847T	acT	acA	1	1	AY.109	0.00074
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	AY.114	0.000231
ORF1ab/nsp3	847	T847del1	acT	ac-	1	1	AY.120.1	0.000321
ORF1ab/nsp3	847	T847T	acT	acA	1	1	AY.120.2	0.001285
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	AY.14	0.000088
ORF1ab/nsp3	847	T847T	acT	acA	1	1	AY.16	0.00038
ORF1ab/nsp3	847	T847del1	acT	ac-	1	1	AY.16.1	0.00047
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	AY.20	0.000039
ORF1ab/nsp3	847	T847del1	acT	ac-	1	1	AY.20	0.000039
ORF1ab/nsp3	847	T847T	acT	acA	1	1	AY.24	0.000431
ORF1ab/nsp3	847	T847S	aCt	aGt	1	1	AY.25	0.000006
ORF1ab/nsp3	847	T847S	Act	Tct	1	1	AY.3	0.00001
ORF1ab/nsp3	847	T847T	acT	acA	1	1	AY.32	0.000532
ORF1ab/nsp3	847	T847T	acT	acA	1	1	AY.35	0.000233
ORF1ab/nsp3	847	T847S	Act	Tct	1	1	AY.39	0.000025
ORF1ab/nsp3	847	T847S	Act	Tct	1	1	AY.4	0.000002
ORF1ab/nsp3	847	T847N	aCt	aAt	1	1	AY.4.5	0.000107
ORF1ab/nsp3	847	T847del	ACT	---	1	1	AY.4.5	0.000107
ORF1ab/nsp3	847	T847A	Act	Gct	1	1	AY.42	0.00004
ORF1ab/nsp3	847	T847del	ACT	---	1	1	AY.43	0.000004
ORF1ab/nsp3	847	T847del	ACT	---	1	1	AY.44	0.000006
ORF1ab/nsp3	847	T847A	Act	Gct	1	1	AY.44	0.000006
ORF1ab/nsp3	847	T847T	acT	acA	1	1	AY.46.1	0.001027
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	AY.46.2	0.000635
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	AY.57	0.000656
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	AY.59	0.00053
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	AY.61	0.000105
ORF1ab/nsp3	847	T847T	acT	acA	1	1	AY.66	0.00107
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	AY.66	0.00107
ORF1ab/nsp3	847	T847T	acT	acA	1	1	AY.67	0.000464
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	AY.7	0.000196
ORF1ab/nsp3	847	T847T	acT	acA	1	1	AY.74	0.000116
ORF1ab/nsp3	847	T847del	ACT	---	1	1	AY.75	0.000056
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	AY.75	0.000056
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	AY.77	0.001127
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	AY.78	0.001541
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	AY.80	0.001129
ORF1ab/nsp3	847	T847T	acT	acA	1	1	AY.80	0.001129
ORF1ab/nsp3	847	T847T	acT	acA	1	1	AY.82	0.001357
ORF1ab/nsp3	847	T847T	acT	acA	1	1	AY.85	0.000427
ORF1ab/nsp3	847	T847T	acT	acA	1	1	AY.88	0.000884
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	AY.9.2	0.000037
ORF1ab/nsp3	847	T847T	acT	acA	1	1	AY.97	0.001701
ORF1ab/nsp3	847	T847T	acT	acA	1	1	AY.99	0.001049
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	AY.99.2	0.000092
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	AZ.2	0.000821
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B	0.000128
ORF1ab/nsp3	847	T847A	Act	Gct	1	1	B.1	0.000009
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.1.1	0.000327
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.101	0.01
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.121	0.002427
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.1.121	0.002427
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.128	0.007092
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.132	0.014925
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.135	0.004695
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.1.138	0.006061
ORF1ab/nsp3	847	T847del	ACT	---	1	1	B.1.1.142	0.017544
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.1.170	0.001247
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.181	0.004545
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.189	0.001513
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.196	0.005714
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.205	0.003717
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.1.214	0.000055
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.216	0.00089
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.1.220	0.001859
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.228	0.003049
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.229	0.005747
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.231	0.003096
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.1.241	0.00207
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.244	0.015385
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.1.25	0.000569
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.25	0.000569
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.255	0.00303
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.1.258	0.003257
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.265	0.003155
ORF1ab/nsp3	847	T847del	ACT	---	1	1	B.1.1.279	0.001121
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.1.28	0.000311
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.1.280	0.003086
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.289	0.002083
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.1.306	0.000438
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.312	0.001912
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.1.317	0.000412
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.1.318	0.000302
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.33	0.000421
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.1.348	0.000796
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.362	0.005618
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.363	0.005988
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.365	0.005587
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.372	0.000689
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.1.372	0.000689
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.1.402	0.011111
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.407	0.041667
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.413	0.006897
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.1.434	0.000349
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.507	0.008696
ORF1ab/nsp3	847	T847del	ACT	---	1	1	B.1.1.519	0.00004
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.1.523	0.001563
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.523	0.001563
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.57	0.011494
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.63	0.000386
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.1.67	0.004566
ORF1ab/nsp3	847	T847A	Act	Gct	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	847	T847M	aCT	aTG	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.70	0.000341
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.1.82	0.038462
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.128	0.000635
ORF1ab/nsp3	847	T847A	Act	Gct	1	1	B.1.139	0.000733
ORF1ab/nsp3	847	T847del1	acT	ac-	1	1	B.1.145	0.052632
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.157	0.002985
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.160	0.000031
ORF1ab/nsp3	847	T847S	Act	Tct	1	1	B.1.160.14	0.002119
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.160.15	0.00495
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.160.17	0.001701
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.160.29	0.004219
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.160.30	0.002976
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.170	0.00431
ORF1ab/nsp3	847	T847N	aCt	aAt	1	1	B.1.177	0.000013
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.177.11	0.001698
ORF1ab/nsp3	847	T847del	ACT	---	1	1	B.1.177.16	0.000664
ORF1ab/nsp3	847	T847del	ACT	---	1	1	B.1.177.17	0.000821
ORF1ab/nsp3	847	T847del	ACT	---	1	1	B.1.177.18	0.00116
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.177.20	0.001517
ORF1ab/nsp3	847	T847del2	ACt	--t	1	1	B.1.177.21	0.000076
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.177.21	0.000076
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.177.23	0.003236
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.177.28	0.007407
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.177.31	0.011494
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.177.35	0.000691
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.177.35	0.000691
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.177.39	0.015385
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.177.41	0.0025
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.177.44	0.000519
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.177.50	0.004695
ORF1ab/nsp3	847	T847del	ACT	---	1	1	B.1.177.51	0.004566
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.177.53	0.002392
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.177.54	0.000606
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.177.55	0.002331
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.177.69	0.001484
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.177.7	0.000165
ORF1ab/nsp3	847	T847del1	acT	ac-	1	1	B.1.177.7	0.000165
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.177.77	0.000726
ORF1ab/nsp3	847	T847del	ACT	---	1	1	B.1.177.8	0.000752
ORF1ab/nsp3	847	T847del	ACT	---	1	1	B.1.177.81	0.000189
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.177.87	0.000728
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.178	0.02381
ORF1ab/nsp3	847	T847del2	ACt	--t	1	1	B.1.2	0.000009
ORF1ab/nsp3	847	T847P	Act	Cct	1	1	B.1.2	0.000009
ORF1ab/nsp3	847	T847N	aCt	aAt	1	1	B.1.2	0.000009
ORF1ab/nsp3	847	T847S	Act	Tct	1	1	B.1.2	0.000009
ORF1ab/nsp3	847	T847del1	acT	ac-	1	1	B.1.214	0.003663
ORF1ab/nsp3	847	T847N	aCt	aAt	1	1	B.1.221	0.000071
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.221.1	0.002907
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.258.7	0.001912
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.260	0.003344
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.265	0.001271
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.268	0.010417
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.270	0.005618
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.289	0.00266
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.293	0.0125
ORF1ab/nsp3	847	T847del	ACT	---	1	1	B.1.319	0.003049
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.324	0.001605
ORF1ab/nsp3	847	T847del1	acT	ac-	1	1	B.1.351	0.00003
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.351.5	0.0006
ORF1ab/nsp3	847	T847del1	aCt	a-t	1	1	B.1.36	0.000146
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.36.17	0.000494
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.36.18	0.00042
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.36.2	0.010753
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.36.24	0.006173
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.36.25	0.002208
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.36.27	0.000763
ORF1ab/nsp3	847	T847del1	acT	ac-	1	1	B.1.36.29	0.000517
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.36.29	0.000517
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.36.29	0.000517
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.36.35	0.002604
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.36.39	0.002217
ORF1ab/nsp3	847	T847A	Act	Gct	1	1	B.1.361	0.001289
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.371	0.001122
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.381	0.007812
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.385	0.010638
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.387	0.04
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.396	0.000706
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.396	0.000706
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.403	0.003268
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.404	0.001302
ORF1ab/nsp3	847	T847del	ACT	---	1	1	B.1.416.1	0.001563
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.421	0.007463
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.422	0.000812
ORF1ab/nsp3	847	T847del1	acT	ac-	1	1	B.1.424	0.008065
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.427	0.00005
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.438.1	0.000107
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.445	0.011765
ORF1ab/nsp3	847	T847del1	acT	ac-	1	1	B.1.456	0.003268
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.456	0.003268
ORF1ab/nsp3	847	T847del1	acT	ac-	1	1	B.1.465	0.003802
ORF1ab/nsp3	847	T847T	acT	acG	1	1	B.1.466.2	0.000391
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.468	0.005714
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.474	0.001901
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.479	0.038462
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.493	0.025641
ORF1ab/nsp3	847	T847T	acT	acC	1	1	B.1.497	0.000315
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.509	0.000866
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.509	0.000866
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.521	0.004975
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.524	0.001406
ORF1ab/nsp3	847	T847del1	acT	ac-	1	1	B.1.533	0.009615
ORF1ab/nsp3	847	T847del1	acT	ac-	1	1	B.1.537	0.02
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.558	0.004566
ORF1ab/nsp3	847	T847del1	acT	ac-	1	1	B.1.560	0.00463
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.560	0.00463
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.561	0.000397
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.564	0.000426
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.565	0.00081
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.571	0.009709
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.576	0.000907
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.582	0.000491
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.588	0.00091
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.590	0.004545
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.595.3	0.026316
ORF1ab/nsp3	847	T847N	aCt	aAt	1	1	B.1.596	0.000087
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.6	0.017241
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.600	0.005848
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.610	0.003546
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.617.1	0.000129
ORF1ab/nsp3	847	T847N	aCt	aAt	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	847	T847A	Act	Gct	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	847	T847del1	acT	ac-	1	1	B.1.617.3	0.002985
ORF1ab/nsp3	847	T847del1	acT	ac-	1	1	B.1.621	0.000089
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.621.1	0.000506
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.623	0.000536
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.628	0.000352
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.628	0.000352
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.629	0.013333
ORF1ab/nsp3	847	T847del	ACT	---	1	1	B.1.630	0.005236
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.636	0.006711
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.1.88.1	0.004808
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.1.91	0.002075
ORF1ab/nsp3	847	T847del	ACT	---	1	1	B.15	0.017544
ORF1ab/nsp3	847	T847T	acT	acA	1	1	B.4.5	0.011905
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	B.45	0.003831
ORF1ab/nsp3	847	T847del1	acT	ac-	1	1	C.1	0.002392
ORF1ab/nsp3	847	T847T	acT	acA	1	1	C.35	0.000774
ORF1ab/nsp3	847	T847T	acT	acA	1	1	C.36.3.1	0.002717
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	C.37	0.000116
ORF1ab/nsp3	847	T847T	acT	acA	1	1	C.37.1	0.002618
ORF1ab/nsp3	847	T847T	acT	acA	1	1	N.1	0.016949
ORF1ab/nsp3	847	T847T	acT	acA	1	1	N.4	0.004255
ORF1ab/nsp3	847	T847I	aCt	aTt	1	1	P.1.15	0.000232
ORF1ab/nsp3	847	T847T	acT	acA	1	1	P.2	0.000187
ORF1ab/nsp3	847	T847T	acT	acA	1	1	P.3	0.001595

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.