CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 837 & Codon = aaT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3837K837NK1655NnonsynaaGaaT44717445510.9962885228-5230

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3837K837NaaGaaT4455144717All0.008521
ORF1ab/nsp3837K837NaaGaaT3148231482B.1.3510.93585
ORF1ab/nsp3837K837NaaGaaT32253225B.1.351.20.975794
ORF1ab/nsp3837K837NaaGaaT16341634B.1.351.50.979616
ORF1ab/nsp3837K837NaaGaaT12281228AY.430.005441
ORF1ab/nsp3837K837NaaGaaT10861086B.1.351.30.951797
ORF1ab/nsp3837K837NaaGaaT10441045B.10.009563
ORF1ab/nsp3837K837NaaGaaT629765AY.40.000979
ORF1ab/nsp3837K837NaaGaaT720721B.1.1.70.000645
ORF1ab/nsp3837K837NaaGaaT369369AY.130.059401
ORF1ab/nsp3837K837NaaGaaT252252P.10.00397
ORF1ab/nsp3837K837NaaGaaT202202B.1.20.001779
ORF1ab/nsp3837K837NaaGaaT201201B.1.617.20.000757
ORF1ab/nsp3837K837NaaGaaT199199B.1.88.10.956731
ORF1ab/nsp3837K837NaaGaaT180180B.1.10.003265
ORF1ab/nsp3837K837NaaGaaT174174AY.1030.00108
ORF1ab/nsp3837K837NaaGaaT127127AY.340.012315
ORF1ab/nsp3837K837NaaGaaT9090AY.440.000548
ORF1ab/nsp3837K837NaaGaaT8585B.1.1600.002651
ORF1ab/nsp3837K837NaaGaaT6969B.1.4290.001623
ORF1ab/nsp3837K837NaaGaaT6666B.1.2430.004593
ORF1ab/nsp3837K837NaaGaaT6464AY.250.000385
ORF1ab/nsp3837K837NaaGaaT5252AY.90.003515
ORF1ab/nsp3837K837NaaGaaT3447AY.30.000338
ORF1ab/nsp3837K837NaaGaaT3232A.280.084656
ORF1ab/nsp3837K837NaaGaaT3131B.1.2580.002063
ORF1ab/nsp3837K837NaaGaaT2930AY.390.000717
ORF1ab/nsp3837K837NaaGaaT3030AY.610.003143
ORF1ab/nsp3837K837NaaGaaT3030AY.710.014252
ORF1ab/nsp3837K837NaaGaaT2828AY.1020.000742
ORF1ab/nsp3837K837NaaGaaT2828AY.1210.003789
ORF1ab/nsp3837K837NaaGaaT2626AY.200.00101
ORF1ab/nsp3837K837NaaGaaT2626B.1.2650.033037
ORF1ab/nsp3837K837NaaGaaT2525B.1.6151
ORF1ab/nsp3837K837NaaGaaT2323B.1.5240.032349
ORF1ab/nsp3837K837NaaGaaT2222AY.750.001232
ORF1ab/nsp3837K837NaaGaaT2121AY.4.20.000455
ORF1ab/nsp3837K837NaaGaaT2121AY.920.006033
ORF1ab/nsp3837K837NaaGaaT2020B.1.1.4190.148148
ORF1ab/nsp3837K837NaaGaaT2020B.1.1770.000263
ORF1ab/nsp3837K837NaaGaaT2020B.1.5260.00047
ORF1ab/nsp3837K837NaaGaaT1919AY.330.001269
ORF1ab/nsp3837K837NaaGaaT1418B.1.36.290.007243
ORF1ab/nsp3837K837NaaGaaT1717B.1.5770.011684
ORF1ab/nsp3837K837NaaGaaT1515AY.1000.00069
ORF1ab/nsp3837K837NaaGaaT1515AY.75.10.002705
ORF1ab/nsp3837K837NaaGaaT1515B.1.1.280.004669
ORF1ab/nsp3837K837NaaGaaT1515P.1.170.002426
ORF1ab/nsp3837K837NaaGaaT1414B.1.258.170.001456
ORF1ab/nsp3837K837NaaGaaT1313AY.1200.000483
ORF1ab/nsp3837K837NaaGaaT1313AY.290.000205
ORF1ab/nsp3837K837NaaGaaT1313AY.850.005553
ORF1ab/nsp3837K837NaaGaaT1313B.1.1120.067358
ORF1ab/nsp3837K837NaaGaaT1212AY.50.000248
ORF1ab/nsp3837K837NaaGaaT1212B.1.1260.015306
ORF1ab/nsp3837K837NaaGaaT1212B.1.1700.051724
ORF1ab/nsp3837K837NaaGaaT1111AY.1170.00093
ORF1ab/nsp3837K837NaaGaaT1111AY.230.000767
ORF1ab/nsp3837K837NaaGaaT1111AY.260.000311
ORF1ab/nsp3837K837NaaGaaT1111AY.3.10.000938
ORF1ab/nsp3837K837NaaGaaT1111B0.001406
ORF1ab/nsp3837K837NaaGaaT1111B.1.177.810.002083
ORF1ab/nsp3837K837NaaGaaT1111B.1.5540.048458
ORF1ab/nsp3837K837NaaGaaT1111B.1.6200.010407
ORF1ab/nsp3837K837NaaGaaT1111B.1.6360.073826
ORF1ab/nsp3837K837NaaGaaT1111C.370.001277
ORF1ab/nsp3837K837NaaGaaT1010B.1.1.5190.000397
ORF1ab/nsp3837K837NaaGaaT1010B.1.360.001459
ORF1ab/nsp3837K837NaaGaaT99AY.450.001095
ORF1ab/nsp3837K837NaaGaaT88AY.420.000322
ORF1ab/nsp3837K837NaaGaaT88AY.470.000249
ORF1ab/nsp3837K837NaaGaaT88AY.5.40.002214
ORF1ab/nsp3837K837NaaGaaT88AY.530.0023
ORF1ab/nsp3837K837NaaGaaT88AY.9.20.000294
ORF1ab/nsp3837K837NaaGaaT88AY.980.000632
ORF1ab/nsp3837K837NaaGaaT88AY.98.10.000387
ORF1ab/nsp3837K837NaaGaaT88B.1.1.2160.007124
ORF1ab/nsp3837K837NaaGaaT88B.1.1.4160.00724
ORF1ab/nsp3837K837NaaGaaT88P.20.001493
ORF1ab/nsp3837K837NaaGaaT77AY.1190.000247
ORF1ab/nsp3837K837NaaGaaT77AY.320.003727
ORF1ab/nsp3837K837NaaGaaT77AY.39.10.000277
ORF1ab/nsp3837K837NaaGaaT77AY.790.008475
ORF1ab/nsp3837K837NaaGaaT77B.1.3770.031963
ORF1ab/nsp3837K837NaaGaaT67B.1.4270.000303
ORF1ab/nsp3837K837NaaGaaT77B.1.5950.001827
ORF1ab/nsp3837K837NaaGaaT77C.160.007423
ORF1ab/nsp3837K837NaaGaaT77D.20.000525
ORF1ab/nsp3837K837NaaGaaT66A0.002322
ORF1ab/nsp3837K837NaaGaaT66AY.120.2.10.00299
ORF1ab/nsp3837K837NaaGaaT66AY.460.000624
ORF1ab/nsp3837K837NaaGaaT66AY.540.000572
ORF1ab/nsp3837K837NaaGaaT66AY.950.004566
ORF1ab/nsp3837K837NaaGaaT66AY.960.012448
ORF1ab/nsp3837K837NaaGaaT66B.1.1.3740.014252
ORF1ab/nsp3837K837NaaGaaT66B.1.1.390.003058
ORF1ab/nsp3837K837NaaGaaT66B.1.2210.000426
ORF1ab/nsp3837K837NaaGaaT66P.1.150.001394
ORF1ab/nsp3837K837NaaGaaT55AY.550.004587
ORF1ab/nsp3837K837NaaGaaT55AY.99.20.000461
ORF1ab/nsp3837K837NaaGaaT55B.1.1.1280.035461
ORF1ab/nsp3837K837NaaGaaT55B.1.1.3180.001509
ORF1ab/nsp3837K837NaaGaaT55B.1.1.3890.030303
ORF1ab/nsp3837K837NaaGaaT55B.1.177.730.002831
ORF1ab/nsp3837K837NaaGaaT55B.1.177.860.000917
ORF1ab/nsp3837K837NaaGaaT55B.1.3960.003529
ORF1ab/nsp3837K837NaaGaaT55B.1.6370.000365
ORF1ab/nsp3837K837NaaGaaT55Q.80.000825
ORF1ab/nsp3837K837NaaGaaT44A.270.006623
ORF1ab/nsp3837K837NaaGaaT44AY.300.001583
ORF1ab/nsp3837K837NaaGaaT44AY.4.50.00043
ORF1ab/nsp3837K837NaaGaaT44B.1.1.3050.015444
ORF1ab/nsp3837K837NaaGaaT44B.1.177.430.005908
ORF1ab/nsp3837K837NaaGaaT44B.1.177.570.001124
ORF1ab/nsp3837K837NaaGaaT44B.1.214.20.002398
ORF1ab/nsp3837K837NaaGaaT44B.1.2400.000862
ORF1ab/nsp3837K837NaaGaaT44B.1.3360.009756
ORF1ab/nsp3837K837NaaGaaT44B.1.4700.005618
ORF1ab/nsp3837K837NaaGaaT44B.1.5640.001704
ORF1ab/nsp3837K837NaaGaaT44B.1.5960.000349
ORF1ab/nsp3837K837NaaGaaT44B.1.619.10.002566
ORF1ab/nsp3837K837NaaGaaT44B.1.6210.000354
ORF1ab/nsp3837K837NaaGaaT44N.50.007067
ORF1ab/nsp3837K837NaaGaaT44P.1.120.001936
ORF1ab/nsp3837K837NaaGaaT44P.50.054795
ORF1ab/nsp3837K837NaaGaaT44R.10.00036
ORF1ab/nsp3837K837NaaGaaT33AY.1060.001005
ORF1ab/nsp3837K837NaaGaaT33AY.140.000264
ORF1ab/nsp3837K837NaaGaaT33AY.360.000445
ORF1ab/nsp3837K837NaaGaaT33AY.4.40.001227
ORF1ab/nsp3837K837NaaGaaT33AY.46.40.000494
ORF1ab/nsp3837K837NaaGaaT33AY.560.004815
ORF1ab/nsp3837K837NaaGaaT33AY.60.000123
ORF1ab/nsp3837K837NaaGaaT33AY.670.001393
ORF1ab/nsp3837K837NaaGaaT33B.1.1.3060.001315
ORF1ab/nsp3837K837NaaGaaT33B.1.1.330.001263
ORF1ab/nsp3837K837NaaGaaT33B.1.177.210.000229
ORF1ab/nsp3837K837NaaGaaT33B.1.2060.002447
ORF1ab/nsp3837K837NaaGaaT33B.1.221.30.0025
ORF1ab/nsp3837K837NaaGaaT33B.1.2340.000396
ORF1ab/nsp3837K837NaaGaaT33B.1.3020.04
ORF1ab/nsp3837K837NaaGaaT33B.1.36.170.001482
ORF1ab/nsp3837K837NaaGaaT33B.1.466.20.001174
ORF1ab/nsp3837K837NaaGaaT33B.1.6090.001438
ORF1ab/nsp3837K837NaaGaaT33B.30.002492
ORF1ab/nsp3837K837NaaGaaT33P.40.011407
ORF1ab/nsp3837K837NaaGaaT22AY.1130.000285
ORF1ab/nsp3837K837NaaGaaT22AY.1160.000574
ORF1ab/nsp3837K837NaaGaaT22AY.1180.000125
ORF1ab/nsp3837K837NaaGaaT12AY.120.000316
ORF1ab/nsp3837K837NaaGaaT22AY.16.10.00094
ORF1ab/nsp3837K837NaaGaaT22AY.270.000129
ORF1ab/nsp3837K837NaaGaaT22AY.380.000999
ORF1ab/nsp3837K837NaaGaaT22AY.4.30.001684
ORF1ab/nsp3837K837NaaGaaT22AY.520.001629
ORF1ab/nsp3837K837NaaGaaT22AY.580.001815
ORF1ab/nsp3837K837NaaGaaT22AY.720.002721
ORF1ab/nsp3837K837NaaGaaT22AY.840.000875
ORF1ab/nsp3837K837NaaGaaT22AZ.20.001642
ORF1ab/nsp3837K837NaaGaaT22B.1.1.2140.000111
ORF1ab/nsp3837K837NaaGaaT22B.1.1.2220.000408
ORF1ab/nsp3837K837NaaGaaT22B.1.1.370.000386
ORF1ab/nsp3837K837NaaGaaT22B.1.1.3750.02381
ORF1ab/nsp3837K837NaaGaaT22B.1.1.4090.005666
ORF1ab/nsp3837K837NaaGaaT22B.1.1.4480.004065
ORF1ab/nsp3837K837NaaGaaT22B.1.1.5070.017391
ORF1ab/nsp3837K837NaaGaaT22B.1.1110.00235
ORF1ab/nsp3837K837NaaGaaT22B.1.1390.001466
ORF1ab/nsp3837K837NaaGaaT22B.1.1430.042553
ORF1ab/nsp3837K837NaaGaaT22B.1.160.160.001859
ORF1ab/nsp3837K837NaaGaaT22B.1.160.320.008584
ORF1ab/nsp3837K837NaaGaaT22B.1.1670.015625
ORF1ab/nsp3837K837NaaGaaT22B.1.177.50.002484
ORF1ab/nsp3837K837NaaGaaT22B.1.2140.007326
ORF1ab/nsp3837K837NaaGaaT22B.1.2320.001075
ORF1ab/nsp3837K837NaaGaaT22B.1.3110.000549
ORF1ab/nsp3837K837NaaGaaT22B.1.3980.005952
ORF1ab/nsp3837K837NaaGaaT22B.1.3990.003868
ORF1ab/nsp3837K837NaaGaaT22B.1.5750.000607
ORF1ab/nsp3837K837NaaGaaT12B.1.617.10.000129
ORF1ab/nsp3837K837NaaGaaT22B.1.621.10.001012
ORF1ab/nsp3837K837NaaGaaT22B.1.6280.000705
ORF1ab/nsp3837K837NaaGaaT22B.1.6340.006849
ORF1ab/nsp3837K837NaaGaaT22B.1.6380.105263
ORF1ab/nsp3837K837NaaGaaT22P.1.70.000639
ORF1ab/nsp3837K837NaaGaaT22Q.10.000253
ORF1ab/nsp3837K837NaaGaaT11A.190.009434
ORF1ab/nsp3837K837NaaGaaT11A.2.30.004739
ORF1ab/nsp3837K837NaaGaaT11AY.10.000396
ORF1ab/nsp3837K837NaaGaaT11AY.1010.00049
ORF1ab/nsp3837K837NaaGaaT11AY.1040.001984
ORF1ab/nsp3837K837NaaGaaT11AY.190.00114
ORF1ab/nsp3837K837NaaGaaT11AY.4.2.10.000149
ORF1ab/nsp3837K837NaaGaaT11AY.410.000294
ORF1ab/nsp3837K837NaaGaaT11AY.46.10.001027
ORF1ab/nsp3837K837NaaGaaT11AY.46.60.000072
ORF1ab/nsp3837K837NaaGaaT11AY.5.30.000337
ORF1ab/nsp3837K837NaaGaaT11AY.620.000436
ORF1ab/nsp3837K837NaaGaaT11AY.650.000533
ORF1ab/nsp3837K837NaaGaaT11AY.690.000187
ORF1ab/nsp3837K837NaaGaaT11AY.70.000196
ORF1ab/nsp3837K837NaaGaaT11AY.7.10.000113
ORF1ab/nsp3837K837NaaGaaT11AY.730.000665
ORF1ab/nsp3837K837NaaGaaT11AY.740.000116
ORF1ab/nsp3837K837NaaGaaT11AY.860.00083
ORF1ab/nsp3837K837NaaGaaT11AY.870.000833
ORF1ab/nsp3837K837NaaGaaT11AZ.10.000867
ORF1ab/nsp3837K837NaaGaaT11B.1.1.10.000327
ORF1ab/nsp3837K837NaaGaaT11B.1.1.1170.009709
ORF1ab/nsp3837K837NaaGaaT11B.1.1.1530.001095
ORF1ab/nsp3837K837NaaGaaT11B.1.1.1740.003378
ORF1ab/nsp3837K837NaaGaaT11B.1.1.1760.000439
ORF1ab/nsp3837K837NaaGaaT11B.1.1.1920.002309
ORF1ab/nsp3837K837NaaGaaT11B.1.1.1940.00495
ORF1ab/nsp3837K837NaaGaaT11B.1.1.2030.016949
ORF1ab/nsp3837K837NaaGaaT11B.1.1.2070.001182
ORF1ab/nsp3837K837NaaGaaT11B.1.1.2170.003636
ORF1ab/nsp3837K837NaaGaaT11B.1.1.2190.005
ORF1ab/nsp3837K837NaaGaaT11B.1.1.2410.00207
ORF1ab/nsp3837K837NaaGaaT11B.1.1.2650.003155
ORF1ab/nsp3837K837NaaGaaT11B.1.1.3010.001179
ORF1ab/nsp3837K837NaaGaaT11B.1.1.3720.000689
ORF1ab/nsp3837K837NaaGaaT11B.1.1.4340.000349
ORF1ab/nsp3837K837NaaGaaT11B.1.1.5230.001563
ORF1ab/nsp3837K837NaaGaaT11B.1.1.5250.005464
ORF1ab/nsp3837K837NaaGaaT11B.1.1.630.000386
ORF1ab/nsp3837K837NaaGaaT11B.1.1150.021739
ORF1ab/nsp3837K837NaaGaaT11B.1.177.310.011494
ORF1ab/nsp3837K837NaaGaaT11B.1.177.420.000894
ORF1ab/nsp3837K837NaaGaaT11B.1.177.440.000519
ORF1ab/nsp3837K837NaaGaaT11B.1.177.550.002331
ORF1ab/nsp3837K837NaaGaaT11B.1.177.560.000668
ORF1ab/nsp3837K837NaaGaaT11B.1.177.600.000218
ORF1ab/nsp3837K837NaaGaaT11B.1.177.740.015152
ORF1ab/nsp3837K837NaaGaaT11B.1.177.80.000752
ORF1ab/nsp3837K837NaaGaaT11B.1.177.880.012346
ORF1ab/nsp3837K837NaaGaaT11B.1.1990.004132
ORF1ab/nsp3837K837NaaGaaT11B.1.2180.005155
ORF1ab/nsp3837K837NaaGaaT11B.1.220.001318
ORF1ab/nsp3837K837NaaGaaT11B.1.2230.002778
ORF1ab/nsp3837K837NaaGaaT11B.1.2390.001221
ORF1ab/nsp3837K837NaaGaaT11B.1.2410.000812
ORF1ab/nsp3837K837NaaGaaT11B.1.2470.014925
ORF1ab/nsp3837K837NaaGaaT11B.1.258.220.002667
ORF1ab/nsp3837K837NaaGaaT11B.1.2840.013158
ORF1ab/nsp3837K837NaaGaaT11B.1.36.100.004785
ORF1ab/nsp3837K837NaaGaaT11B.1.36.310.001751
ORF1ab/nsp3837K837NaaGaaT11B.1.36.70.004
ORF1ab/nsp3837K837NaaGaaT11B.1.3690.000285
ORF1ab/nsp3837K837NaaGaaT11B.1.3820.008929
ORF1ab/nsp3837K837NaaGaaT11B.1.3890.001002
ORF1ab/nsp3837K837NaaGaaT11B.1.4090.000781
ORF1ab/nsp3837K837NaaGaaT11B.1.4230.010204
ORF1ab/nsp3837K837NaaGaaT11B.1.4260.001009
ORF1ab/nsp3837K837NaaGaaT11B.1.428.20.033333
ORF1ab/nsp3837K837NaaGaaT11B.1.4410.009615
ORF1ab/nsp3837K837NaaGaaT11B.1.466.10.007194
ORF1ab/nsp3837K837NaaGaaT11B.1.4680.005714
ORF1ab/nsp3837K837NaaGaaT11B.1.5030.002488
ORF1ab/nsp3837K837NaaGaaT11B.1.5230.002451
ORF1ab/nsp3837K837NaaGaaT11B.1.5250.000113
ORF1ab/nsp3837K837NaaGaaT11B.1.5450.014493
ORF1ab/nsp3837K837NaaGaaT11B.1.5740.002151
ORF1ab/nsp3837K837NaaGaaT11B.1.5880.00091
ORF1ab/nsp3837K837NaaGaaT11B.1.6010.030303
ORF1ab/nsp3837K837NaaGaaT11B.1.617.30.002985
ORF1ab/nsp3837K837NaaGaaT11B.40.002208
ORF1ab/nsp3837K837NaaGaaT11B.400.000364
ORF1ab/nsp3837K837NaaGaaT11B.6.60.000889
ORF1ab/nsp3837K837NaaGaaT11C.20.016129
ORF1ab/nsp3837K837NaaGaaT11C.300.001727
ORF1ab/nsp3837K837NaaGaaT11C.320.023256
ORF1ab/nsp3837K837NaaGaaT11C.350.000774
ORF1ab/nsp3837K837NaaGaaT11C.36.30.000567
ORF1ab/nsp3837K837NaaGaaT11C.37.10.002618
ORF1ab/nsp3837K837NaaGaaT11K.10.02381
ORF1ab/nsp3837K837NaaGaaT11P.1.130.000898
ORF1ab/nsp3837K837NaaGaaT11P.1.140.000048
ORF1ab/nsp3837K837NaaGaaT11Q.20.000613
ORF1ab/nsp3837K837NaaGaaT11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.