CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 825 & Codon = ctT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3825L825LL1643LsynctGctT1621524670.1521435192-5194

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3825L825LctGctT246716215All0.000472
ORF1ab/nsp3825L825LctGctT2582280B.1.1.70.000231
ORF1ab/nsp3825L825LctGctT31388B.1.6210.000266
ORF1ab/nsp3825L825LctGctT338899AY.40.000526
ORF1ab/nsp3825L825LctGctT608608B.1.1.700.207367
ORF1ab/nsp3825L825LctGctT109493B.1.617.20.00041
ORF1ab/nsp3825L825LctGctT2461B.1.1600.000062
ORF1ab/nsp3825L825LctGctT4445R.10.00036
ORF1ab/nsp3825L825LctGctT84294AY.430.000372
ORF1ab/nsp3825L825LctGctT27286AY.1030.000168
ORF1ab/nsp3825L825LctGctT76261B.1.20.000669
ORF1ab/nsp3825L825LctGctT14248AY.50.000289
ORF1ab/nsp3825L825LctGctT20225AY.250.00012
ORF1ab/nsp3825L825LctGctT68156B.10.000623
ORF1ab/nsp3825L825LctGctT15117B.1.1770.000198
ORF1ab/nsp3825L825LctGctT37109AY.440.000225
ORF1ab/nsp3825L825LctGctT102106C.370.011838
ORF1ab/nsp3825L825LctGctT485AY.260.000113
ORF1ab/nsp3825L825LctGctT6085B.1.5250.00679
ORF1ab/nsp3825L825LctGctT2884P.10.000441
ORF1ab/nsp3825L825LctGctT4478AY.470.001369
ORF1ab/nsp3825L825LctGctT1072B.1.2430.000696
ORF1ab/nsp3825L825LctGctT1670B.1.10.00029
ORF1ab/nsp3825L825LctGctT357AY.200.000117
ORF1ab/nsp3825L825LctGctT5757P.1.160.021324
ORF1ab/nsp3825L825LctGctT850AY.750.000448
ORF1ab/nsp3825L825LctGctT1147AY.99.20.001014
ORF1ab/nsp3825L825LctGctT4444B.1.1.4320.055696
ORF1ab/nsp3825L825LctGctT1242AY.30.000119
ORF1ab/nsp3825L825LctGctT537AY.390.000124
ORF1ab/nsp3825L825LctGctT934AY.1020.000239
ORF1ab/nsp3825L825LctGctT433AY.1200.000149
ORF1ab/nsp3825L825LctGctT532B.1.1.5190.000199
ORF1ab/nsp3825L825LctGctT231AY.1000.000092
ORF1ab/nsp3825L825LctGctT1029B.1.2210.00071
ORF1ab/nsp3825L825LctGctT427AY.230.000279
ORF1ab/nsp3825L825LctGctT827B.1.4290.000188
ORF1ab/nsp3825L825LctGctT826AY.610.000838
ORF1ab/nsp3825L825LctGctT1021AY.4.20.000217
ORF1ab/nsp3825L825LctGctT421AY.46.40.000658
ORF1ab/nsp3825L825LctGctT520AY.75.10.000902
ORF1ab/nsp3825L825LctGctT919B.1.4270.000454
ORF1ab/nsp3825L825LctGctT1519B.1.5260.000353
ORF1ab/nsp3825L825LctGctT118AY.420.00004
ORF1ab/nsp3825L825LctGctT1518B.1.438.10.001609
ORF1ab/nsp3825L825LctGctT116AY.360.000148
ORF1ab/nsp3825L825LctGctT116AY.60.000041
ORF1ab/nsp3825L825LctGctT1316AY.880.011494
ORF1ab/nsp3825L825LctGctT516P.1.140.000239
ORF1ab/nsp3825L825LctGctT515B.1.2580.000333
ORF1ab/nsp3825L825LctGctT415B.1.3510.000119
ORF1ab/nsp3825L825LctGctT214AY.290.000032
ORF1ab/nsp3825L825LctGctT114AY.4.50.000107
ORF1ab/nsp3825L825LctGctT814AY.46.60.000578
ORF1ab/nsp3825L825LctGctT713AY.330.000467
ORF1ab/nsp3825L825LctGctT613AY.460.000624
ORF1ab/nsp3825L825LctGctT113B.1.617.10.000129
ORF1ab/nsp3825L825LctGctT1313C.201
ORF1ab/nsp3825L825LctGctT112B.1.6230.000536
ORF1ab/nsp3825L825LctGctT911AY.120.10.002889
ORF1ab/nsp3825L825LctGctT411AY.1210.000541
ORF1ab/nsp3825L825LctGctT511B.1.1.630.001929
ORF1ab/nsp3825L825LctGctT610B.1.1.280.001867
ORF1ab/nsp3825L825LctGctT110Q.10.000126
ORF1ab/nsp3825L825LctGctT18B.1.258.170.000104
ORF1ab/nsp3825L825LctGctT28B.1.360.000292
ORF1ab/nsp3825L825LctGctT18Q.40.000455
ORF1ab/nsp3825L825LctGctT37AY.1190.000106
ORF1ab/nsp3825L825LctGctT57AY.39.10.000198
ORF1ab/nsp3825L825LctGctT27B.1.1.2940.002532
ORF1ab/nsp3825L825LctGctT77B.1.177.280.051852
ORF1ab/nsp3825L825LctGctT77B.1.177.510.031963
ORF1ab/nsp3825L825LctGctT16AY.1180.000063
ORF1ab/nsp3825L825LctGctT16AY.140.000088
ORF1ab/nsp3825L825LctGctT56AY.16.10.00235
ORF1ab/nsp3825L825LctGctT66AY.46.20.003812
ORF1ab/nsp3825L825LctGctT16AY.46.50.000198
ORF1ab/nsp3825L825LctGctT66AY.7.10.000676
ORF1ab/nsp3825L825LctGctT56AY.740.000578
ORF1ab/nsp3825L825LctGctT66B.1.3770.027397
ORF1ab/nsp3825L825LctGctT16D.20.000075
ORF1ab/nsp3825L825LctGctT46P.1.170.000647
ORF1ab/nsp3825L825LctGctT46P.20.000747
ORF1ab/nsp3825L825LctGctT15AY.3.10.000085
ORF1ab/nsp3825L825LctGctT45AY.46.10.004107
ORF1ab/nsp3825L825LctGctT35AY.690.00056
ORF1ab/nsp3825L825LctGctT35AY.850.001282
ORF1ab/nsp3825L825LctGctT25B.1.1.2220.000408
ORF1ab/nsp3825L825LctGctT25B.1.1.250.001137
ORF1ab/nsp3825L825LctGctT15B.1.1.4340.000349
ORF1ab/nsp3825L825LctGctT55B.1.160.280.01462
ORF1ab/nsp3825L825LctGctT44A0.001548
ORF1ab/nsp3825L825LctGctT14AY.130.000161
ORF1ab/nsp3825L825LctGctT24AY.540.000191
ORF1ab/nsp3825L825LctGctT44B.1.5700.011765
ORF1ab/nsp3825L825LctGctT44B.6.60.003556
ORF1ab/nsp3825L825LctGctT14Q.80.000165
ORF1ab/nsp3825L825LctGctT23A.280.005291
ORF1ab/nsp3825L825LctGctT33AD.20.000657
ORF1ab/nsp3825L825LctGctT13AY.4.2.10.000149
ORF1ab/nsp3825L825LctGctT13AY.410.000294
ORF1ab/nsp3825L825LctGctT13AY.680.000274
ORF1ab/nsp3825L825LctGctT33AY.770.003382
ORF1ab/nsp3825L825LctGctT13AY.9.10.000084
ORF1ab/nsp3825L825LctGctT33B.1.1.4650.046875
ORF1ab/nsp3825L825LctGctT33B.1.110.30.002155
ORF1ab/nsp3825L825LctGctT33B.1.351.20.000908
ORF1ab/nsp3825L825LctGctT13P.1.10.000318
ORF1ab/nsp3825L825LctGctT33P.1.90.014423
ORF1ab/nsp3825L825LctGctT12A.2.50.000499
ORF1ab/nsp3825L825LctGctT22AP.10.003003
ORF1ab/nsp3825L825LctGctT12AY.1010.00049
ORF1ab/nsp3825L825LctGctT12AY.160.00038
ORF1ab/nsp3825L825LctGctT22AY.23.10.000835
ORF1ab/nsp3825L825LctGctT12AY.320.000532
ORF1ab/nsp3825L825LctGctT12AY.940.000443
ORF1ab/nsp3825L825LctGctT12B.1.1.2140.000055
ORF1ab/nsp3825L825LctGctT22B.1.1.3480.001592
ORF1ab/nsp3825L825LctGctT12B.1.1390.000733
ORF1ab/nsp3825L825LctGctT22B.1.243.10.044444
ORF1ab/nsp3825L825LctGctT12B.1.3200.001245
ORF1ab/nsp3825L825LctGctT22B.1.4700.002809
ORF1ab/nsp3825L825LctGctT22B.1.4800.004975
ORF1ab/nsp3825L825LctGctT22B.1.4970.00063
ORF1ab/nsp3825L825LctGctT12B.1.5610.000397
ORF1ab/nsp3825L825LctGctT22C.160.002121
ORF1ab/nsp3825L825LctGctT11A.20.000662
ORF1ab/nsp3825L825LctGctT11AY.1080.001103
ORF1ab/nsp3825L825LctGctT11AY.110.001339
ORF1ab/nsp3825L825LctGctT11AY.1140.000231
ORF1ab/nsp3825L825LctGctT11AY.370.000316
ORF1ab/nsp3825L825LctGctT11AY.4.30.000842
ORF1ab/nsp3825L825LctGctT11AY.480.000465
ORF1ab/nsp3825L825LctGctT11AY.500.000799
ORF1ab/nsp3825L825LctGctT11AY.530.000288
ORF1ab/nsp3825L825LctGctT11AY.570.000656
ORF1ab/nsp3825L825LctGctT11AY.970.001701
ORF1ab/nsp3825L825LctGctT11B.1.1.100.001115
ORF1ab/nsp3825L825LctGctT11B.1.1.1980.001468
ORF1ab/nsp3825L825LctGctT11B.1.1.2800.003086
ORF1ab/nsp3825L825LctGctT11B.1.1.2830.023256
ORF1ab/nsp3825L825LctGctT11B.1.1.2890.002083
ORF1ab/nsp3825L825LctGctT11B.1.1.3070.002532
ORF1ab/nsp3825L825LctGctT11B.1.1.3160.000925
ORF1ab/nsp3825L825LctGctT11B.1.1.3180.000302
ORF1ab/nsp3825L825LctGctT11B.1.1.3260.001761
ORF1ab/nsp3825L825LctGctT11B.1.1.3910.008547
ORF1ab/nsp3825L825LctGctT11B.1.1430.021277
ORF1ab/nsp3825L825LctGctT11B.1.160.160.000929
ORF1ab/nsp3825L825LctGctT11B.1.177.100.000878
ORF1ab/nsp3825L825LctGctT11B.1.177.690.001484
ORF1ab/nsp3825L825LctGctT11B.1.2410.000812
ORF1ab/nsp3825L825LctGctT11B.1.2470.014925
ORF1ab/nsp3825L825LctGctT11B.1.36.10.00114
ORF1ab/nsp3825L825LctGctT11B.1.36.220.001208
ORF1ab/nsp3825L825LctGctT11B.1.36.290.000517
ORF1ab/nsp3825L825LctGctT11B.1.36.80.001
ORF1ab/nsp3825L825LctGctT11B.1.4360.001029
ORF1ab/nsp3825L825LctGctT11B.1.4510.008197
ORF1ab/nsp3825L825LctGctT11B.1.4520.013699
ORF1ab/nsp3825L825LctGctT11B.1.4620.007246
ORF1ab/nsp3825L825LctGctT11B.1.5030.002488
ORF1ab/nsp3825L825LctGctT11B.1.5160.001957
ORF1ab/nsp3825L825LctGctT11B.1.5460.003704
ORF1ab/nsp3825L825LctGctT11B.1.575.10.002439
ORF1ab/nsp3825L825LctGctT11B.1.90.006173
ORF1ab/nsp3825L825LctGctT11C.260.007353
ORF1ab/nsp3825L825LctGctT11P.1.120.000484
ORF1ab/nsp3825L825LctGctT11P.60.003145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.