CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 825 & Codon = Ttg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3825L825LL1643LsynCtgTtg16215128160.7903795192-5194

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3825L825LCtgTtg1281616215All0.002451
ORF1ab/nsp3825L825LCtgTtg24462446AY.630.946228
ORF1ab/nsp3825L825LCtgTtg19882280B.1.1.70.00178
ORF1ab/nsp3825L825LCtgTtg19161916B.1.621.10.969145
ORF1ab/nsp3825L825LCtgTtg13771388B.1.6210.121891
ORF1ab/nsp3825L825LCtgTtg476899AY.40.000741
ORF1ab/nsp3825L825LCtgTtg752752AY.580.682396
ORF1ab/nsp3825L825LCtgTtg353493B.1.617.20.001329
ORF1ab/nsp3825L825LCtgTtg29461B.1.1600.000904
ORF1ab/nsp3825L825LCtgTtg441445R.10.039694
ORF1ab/nsp3825L825LCtgTtg189294AY.430.000837
ORF1ab/nsp3825L825LCtgTtg247286AY.1030.001534
ORF1ab/nsp3825L825LCtgTtg184261B.1.20.00162
ORF1ab/nsp3825L825LCtgTtg234248AY.50.004832
ORF1ab/nsp3825L825LCtgTtg197225AY.250.001185
ORF1ab/nsp3825L825LCtgTtg59156B.10.00054
ORF1ab/nsp3825L825LCtgTtg132132B.1.6320.885906
ORF1ab/nsp3825L825LCtgTtg94117B.1.1770.001238
ORF1ab/nsp3825L825LCtgTtg66109AY.440.000402
ORF1ab/nsp3825L825LCtgTtg107107AY.340.010375
ORF1ab/nsp3825L825LCtgTtg4106C.370.000464
ORF1ab/nsp3825L825LCtgTtg105105B.1.1.3510.293296
ORF1ab/nsp3825L825LCtgTtg8085AY.260.002265
ORF1ab/nsp3825L825LCtgTtg2585B.1.5250.002829
ORF1ab/nsp3825L825LCtgTtg5684P.10.000882
ORF1ab/nsp3825L825LCtgTtg3378AY.470.001026
ORF1ab/nsp3825L825LCtgTtg6272B.1.2430.004314
ORF1ab/nsp3825L825LCtgTtg5170B.1.10.000925
ORF1ab/nsp3825L825LCtgTtg6566AY.98.10.003148
ORF1ab/nsp3825L825LCtgTtg5357AY.200.00206
ORF1ab/nsp3825L825LCtgTtg4150AY.750.002297
ORF1ab/nsp3825L825LCtgTtg3647AY.99.20.003318
ORF1ab/nsp3825L825LCtgTtg2942AY.30.000288
ORF1ab/nsp3825L825LCtgTtg2537AY.390.000618
ORF1ab/nsp3825L825LCtgTtg2234AY.1020.000583
ORF1ab/nsp3825L825LCtgTtg2933AY.1200.001078
ORF1ab/nsp3825L825LCtgTtg2532B.1.1.5190.000993
ORF1ab/nsp3825L825LCtgTtg2831AY.1000.001288
ORF1ab/nsp3825L825LCtgTtg1029B.1.2210.00071
ORF1ab/nsp3825L825LCtgTtg427AY.230.000279
ORF1ab/nsp3825L825LCtgTtg1627B.1.4290.000376
ORF1ab/nsp3825L825LCtgTtg1826AY.610.001886
ORF1ab/nsp3825L825LCtgTtg2424C.310.428571
ORF1ab/nsp3825L825LCtgTtg1121AY.4.20.000239
ORF1ab/nsp3825L825LCtgTtg1721AY.46.40.002797
ORF1ab/nsp3825L825LCtgTtg1520AY.75.10.002705
ORF1ab/nsp3825L825LCtgTtg1019B.1.4270.000505
ORF1ab/nsp3825L825LCtgTtg319B.1.5260.000071
ORF1ab/nsp3825L825LCtgTtg1919P.1.100.00512
ORF1ab/nsp3825L825LCtgTtg1618AY.420.000644
ORF1ab/nsp3825L825LCtgTtg1818B.1.177.750.01873
ORF1ab/nsp3825L825LCtgTtg118B.1.438.10.000107
ORF1ab/nsp3825L825LCtgTtg1717B.1.160.140.036017
ORF1ab/nsp3825L825LCtgTtg1717B.1.5960.001481
ORF1ab/nsp3825L825LCtgTtg1516AY.360.002223
ORF1ab/nsp3825L825LCtgTtg1516AY.60.000617
ORF1ab/nsp3825L825LCtgTtg316AY.880.002653
ORF1ab/nsp3825L825LCtgTtg1116P.1.140.000526
ORF1ab/nsp3825L825LCtgTtg1015B.1.2580.000665
ORF1ab/nsp3825L825LCtgTtg1015B.1.3510.000297
ORF1ab/nsp3825L825LCtgTtg1214AY.290.000189
ORF1ab/nsp3825L825LCtgTtg1314AY.4.50.001397
ORF1ab/nsp3825L825LCtgTtg514AY.46.60.000361
ORF1ab/nsp3825L825LCtgTtg513AY.330.000334
ORF1ab/nsp3825L825LCtgTtg413AY.460.000416
ORF1ab/nsp3825L825LCtgTtg1013B.1.617.10.00129
ORF1ab/nsp3825L825LCtgTtg412AY.90.00027
ORF1ab/nsp3825L825LCtgTtg1212B.1.4160.015228
ORF1ab/nsp3825L825LCtgTtg1112B.1.6230.005901
ORF1ab/nsp3825L825LCtgTtg211AY.120.10.000642
ORF1ab/nsp3825L825LCtgTtg711AY.1210.000947
ORF1ab/nsp3825L825LCtgTtg611B.1.1.630.002315
ORF1ab/nsp3825L825LCtgTtg310B.1.1.280.000934
ORF1ab/nsp3825L825LCtgTtg1010B.1.4410.096154
ORF1ab/nsp3825L825LCtgTtg910Q.10.001137
ORF1ab/nsp3825L825LCtgTtg99B.1.1.1530.009858
ORF1ab/nsp3825L825LCtgTtg68AY.5.40.00166
ORF1ab/nsp3825L825LCtgTtg78B.1.258.170.000728
ORF1ab/nsp3825L825LCtgTtg68B.1.360.000875
ORF1ab/nsp3825L825LCtgTtg78Q.40.003183
ORF1ab/nsp3825L825LCtgTtg77AY.100.00371
ORF1ab/nsp3825L825LCtgTtg37AY.1190.000106
ORF1ab/nsp3825L825LCtgTtg27AY.39.10.000079
ORF1ab/nsp3825L825LCtgTtg57B.1.1.2940.006329
ORF1ab/nsp3825L825LCtgTtg77B.1.177.320.009447
ORF1ab/nsp3825L825LCtgTtg77B.1.177.50.008696
ORF1ab/nsp3825L825LCtgTtg77B.1.5820.003435
ORF1ab/nsp3825L825LCtgTtg56AY.1180.000313
ORF1ab/nsp3825L825LCtgTtg16AY.140.000088
ORF1ab/nsp3825L825LCtgTtg16AY.16.10.00047
ORF1ab/nsp3825L825LCtgTtg56AY.300.001979
ORF1ab/nsp3825L825LCtgTtg66AY.450.00073
ORF1ab/nsp3825L825LCtgTtg56AY.46.50.000992
ORF1ab/nsp3825L825LCtgTtg66AY.5.30.002024
ORF1ab/nsp3825L825LCtgTtg16AY.740.000116
ORF1ab/nsp3825L825LCtgTtg66B.1.1.10.00196
ORF1ab/nsp3825L825LCtgTtg66B.1.3240.009631
ORF1ab/nsp3825L825LCtgTtg66B.1.4680.034286
ORF1ab/nsp3825L825LCtgTtg46D.20.0003
ORF1ab/nsp3825L825LCtgTtg26P.1.170.000324
ORF1ab/nsp3825L825LCtgTtg66P.1.20.006936
ORF1ab/nsp3825L825LCtgTtg26P.20.000373
ORF1ab/nsp3825L825LCtgTtg25AY.690.000373
ORF1ab/nsp3825L825LCtgTtg25AY.850.000854
ORF1ab/nsp3825L825LCtgTtg45AY.9.20.000147
ORF1ab/nsp3825L825LCtgTtg35B.1.1.2220.000612
ORF1ab/nsp3825L825LCtgTtg35B.1.1.250.001706
ORF1ab/nsp3825L825LCtgTtg45B.1.1.4340.001394
ORF1ab/nsp3825L825LCtgTtg55B.1.177.720.016949
ORF1ab/nsp3825L825LCtgTtg55B.1.177.860.000917
ORF1ab/nsp3825L825LCtgTtg55C.140.021645
ORF1ab/nsp3825L825LCtgTtg44AY.1090.002959
ORF1ab/nsp3825L825LCtgTtg34AY.130.000483
ORF1ab/nsp3825L825LCtgTtg24AY.540.000191
ORF1ab/nsp3825L825LCtgTtg44AY.980.000316
ORF1ab/nsp3825L825LCtgTtg44B.1.1.2490.285714
ORF1ab/nsp3825L825LCtgTtg24B.1.177.80.001505
ORF1ab/nsp3825L825LCtgTtg44B.1.3690.001141
ORF1ab/nsp3825L825LCtgTtg24Q.80.00033
ORF1ab/nsp3825L825LCtgTtg13A.280.002646
ORF1ab/nsp3825L825LCtgTtg33AY.1170.000254
ORF1ab/nsp3825L825LCtgTtg33AY.270.000194
ORF1ab/nsp3825L825LCtgTtg23AY.4.2.10.000298
ORF1ab/nsp3825L825LCtgTtg23AY.410.000588
ORF1ab/nsp3825L825LCtgTtg33AY.600.002814
ORF1ab/nsp3825L825LCtgTtg23AY.680.000547
ORF1ab/nsp3825L825LCtgTtg23AY.9.10.000167
ORF1ab/nsp3825L825LCtgTtg33B0.000383
ORF1ab/nsp3825L825LCtgTtg33B.1.1.2370.016216
ORF1ab/nsp3825L825LCtgTtg33B.1.1.2430.012245
ORF1ab/nsp3825L825LCtgTtg23B.1.177.560.001335
ORF1ab/nsp3825L825LCtgTtg33B.1.177.770.002179
ORF1ab/nsp3825L825LCtgTtg33B.1.1990.012397
ORF1ab/nsp3825L825LCtgTtg33B.1.2370.014925
ORF1ab/nsp3825L825LCtgTtg33B.1.5750.00091
ORF1ab/nsp3825L825LCtgTtg33B.1.6090.001438
ORF1ab/nsp3825L825LCtgTtg33B.1.6370.000219
ORF1ab/nsp3825L825LCtgTtg33C.36.30.001702
ORF1ab/nsp3825L825LCtgTtg23P.1.10.000635
ORF1ab/nsp3825L825LCtgTtg22A.23.10.001408
ORF1ab/nsp3825L825LCtgTtg22AE.80.000978
ORF1ab/nsp3825L825LCtgTtg12AY.1010.00049
ORF1ab/nsp3825L825LCtgTtg22AY.1130.000285
ORF1ab/nsp3825L825LCtgTtg12AY.160.00038
ORF1ab/nsp3825L825LCtgTtg22AY.190.002281
ORF1ab/nsp3825L825LCtgTtg22AY.29.10.000441
ORF1ab/nsp3825L825LCtgTtg12AY.320.000532
ORF1ab/nsp3825L825LCtgTtg22AY.640.00119
ORF1ab/nsp3825L825LCtgTtg22AY.660.002139
ORF1ab/nsp3825L825LCtgTtg22AY.700.000417
ORF1ab/nsp3825L825LCtgTtg22AY.840.000875
ORF1ab/nsp3825L825LCtgTtg12AY.940.000443
ORF1ab/nsp3825L825LCtgTtg22B.1.1.2070.002364
ORF1ab/nsp3825L825LCtgTtg12B.1.1.2140.000055
ORF1ab/nsp3825L825LCtgTtg12B.1.1.2160.00089
ORF1ab/nsp3825L825LCtgTtg22B.1.1.2410.004141
ORF1ab/nsp3825L825LCtgTtg22B.1.1.2840.000215
ORF1ab/nsp3825L825LCtgTtg22B.1.1.3720.001377
ORF1ab/nsp3825L825LCtgTtg12B.1.1.390.00051
ORF1ab/nsp3825L825LCtgTtg12B.1.1390.000733
ORF1ab/nsp3825L825LCtgTtg22B.1.177.150.001262
ORF1ab/nsp3825L825LCtgTtg22B.1.177.160.001329
ORF1ab/nsp3825L825LCtgTtg22B.1.177.40.000422
ORF1ab/nsp3825L825LCtgTtg22B.1.214.10.04
ORF1ab/nsp3825L825LCtgTtg22B.1.2340.000264
ORF1ab/nsp3825L825LCtgTtg12B.1.3200.001245
ORF1ab/nsp3825L825LCtgTtg22B.1.4080.00738
ORF1ab/nsp3825L825LCtgTtg22B.1.4710.005464
ORF1ab/nsp3825L825LCtgTtg12B.1.5610.000397
ORF1ab/nsp3825L825LCtgTtg22B.1.5880.00182
ORF1ab/nsp3825L825LCtgTtg22B.1.5950.000522
ORF1ab/nsp3825L825LCtgTtg22C.1.20.008511
ORF1ab/nsp3825L825LCtgTtg22P.1.150.000465
ORF1ab/nsp3825L825LCtgTtg11A.2.20.001689
ORF1ab/nsp3825L825LCtgTtg11A.2.40.003367
ORF1ab/nsp3825L825LCtgTtg11AM.40.003571
ORF1ab/nsp3825L825LCtgTtg11AT.10.005128
ORF1ab/nsp3825L825LCtgTtg11AY.1070.000466
ORF1ab/nsp3825L825LCtgTtg11AY.1100.000113
ORF1ab/nsp3825L825LCtgTtg11AY.120.20.001285
ORF1ab/nsp3825L825LCtgTtg11AY.280.00189
ORF1ab/nsp3825L825LCtgTtg11AY.590.00053
ORF1ab/nsp3825L825LCtgTtg11AY.7.20.000559
ORF1ab/nsp3825L825LCtgTtg11AY.80.000606
ORF1ab/nsp3825L825LCtgTtg11AY.800.001129
ORF1ab/nsp3825L825LCtgTtg11AY.920.000287
ORF1ab/nsp3825L825LCtgTtg11AY.950.000761
ORF1ab/nsp3825L825LCtgTtg11AY.960.002075
ORF1ab/nsp3825L825LCtgTtg11AZ.20.000821
ORF1ab/nsp3825L825LCtgTtg11AZ.30.00152
ORF1ab/nsp3825L825LCtgTtg11B.1.1.2050.003717
ORF1ab/nsp3825L825LCtgTtg11B.1.1.2310.003096
ORF1ab/nsp3825L825LCtgTtg11B.1.1.2650.003155
ORF1ab/nsp3825L825LCtgTtg11B.1.1.2750.011236
ORF1ab/nsp3825L825LCtgTtg11B.1.1.2910.000742
ORF1ab/nsp3825L825LCtgTtg11B.1.1.3060.000438
ORF1ab/nsp3825L825LCtgTtg11B.1.1.3110.000358
ORF1ab/nsp3825L825LCtgTtg11B.1.1.3170.000412
ORF1ab/nsp3825L825LCtgTtg11B.1.1.3290.003846
ORF1ab/nsp3825L825LCtgTtg11B.1.1.330.000421
ORF1ab/nsp3825L825LCtgTtg11B.1.1.3490.010309
ORF1ab/nsp3825L825LCtgTtg11B.1.1.370.000193
ORF1ab/nsp3825L825LCtgTtg11B.1.1.3970.002252
ORF1ab/nsp3825L825LCtgTtg11B.1.1.4170.002703
ORF1ab/nsp3825L825LCtgTtg11B.1.1.4620.008621
ORF1ab/nsp3825L825LCtgTtg11B.1.1.4640.001473
ORF1ab/nsp3825L825LCtgTtg11B.1.1.4860.001577
ORF1ab/nsp3825L825LCtgTtg11B.1.177.440.000519
ORF1ab/nsp3825L825LCtgTtg11B.1.177.570.000281
ORF1ab/nsp3825L825LCtgTtg11B.1.177.630.002703
ORF1ab/nsp3825L825LCtgTtg11B.1.214.20.0006
ORF1ab/nsp3825L825LCtgTtg11B.1.221.10.002907
ORF1ab/nsp3825L825LCtgTtg11B.1.2220.001692
ORF1ab/nsp3825L825LCtgTtg11B.1.2400.000216
ORF1ab/nsp3825L825LCtgTtg11B.1.258.110.000396
ORF1ab/nsp3825L825LCtgTtg11B.1.3110.000275
ORF1ab/nsp3825L825LCtgTtg11B.1.3150.006061
ORF1ab/nsp3825L825LCtgTtg11B.1.3320.003497
ORF1ab/nsp3825L825LCtgTtg11B.1.351.30.000876
ORF1ab/nsp3825L825LCtgTtg11B.1.4090.000781
ORF1ab/nsp3825L825LCtgTtg11B.1.466.20.000391
ORF1ab/nsp3825L825LCtgTtg11B.1.5410.004425
ORF1ab/nsp3825L825LCtgTtg11B.1.5430.01
ORF1ab/nsp3825L825LCtgTtg11B.1.5510.00129
ORF1ab/nsp3825L825LCtgTtg11B.1.5600.00463
ORF1ab/nsp3825L825LCtgTtg11B.1.5680.001111
ORF1ab/nsp3825L825LCtgTtg11B.1.5770.000687
ORF1ab/nsp3825L825LCtgTtg11B.1.5800.004065
ORF1ab/nsp3825L825LCtgTtg11B.1.5890.007576
ORF1ab/nsp3825L825LCtgTtg11B.1.5910.010638
ORF1ab/nsp3825L825LCtgTtg11B.1.6270.00202
ORF1ab/nsp3825L825LCtgTtg11B.1.6300.005236
ORF1ab/nsp3825L825LCtgTtg11B.1.910.002075
ORF1ab/nsp3825L825LCtgTtg11B.400.000364
ORF1ab/nsp3825L825LCtgTtg11B.520.010101
ORF1ab/nsp3825L825LCtgTtg11C.1.10.076923
ORF1ab/nsp3825L825LCtgTtg11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.