CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 825

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3825L825LL1643LsynCtgTtg16215128160.7903795192-5194
ORF1ab/nsp3825L825LL1643LsynctGctT1621524670.1521435192-5194
ORF1ab/nsp3825L825LL1643LsynctGctA162159160.05649095192-5194
ORF1ab/nsp3825L825LL1643LsynctGctC16215160.0009867415192-5194
ORF1ab/nsp3825L825ML1643MnonsynCtgAtg15515515192-5194
ORF1ab/nsp3825L825QL1643QnonsyncTgcAg11011015192-5194
ORF1ab/nsp3825L825del1L1643del1delCtg-tg97870.8969075192-5194
ORF1ab/nsp3825L825del1L1643del1delctGct-9790.09278355192-5194
ORF1ab/nsp3825L825del1L1643del1delcTGc-N9710.01030935192-5194
ORF1ab/nsp3825L825delL1643deldelCTG---757515192-5194
ORF1ab/nsp3825L825FL1643FnonsynCtGTtT101015192-5194
ORF1ab/nsp3825L825PL1643PnonsyncTgcCg1060.65192-5194
ORF1ab/nsp3825L825PL1643PnonsyncTGcCA1040.45192-5194
ORF1ab/nsp3825L825RL1643RnonsyncTgcGg4415192-5194
ORF1ab/nsp3825L825SL1643SnonsynCTgTCg2215192-5194
ORF1ab/nsp3825L825VL1643VnonsynCtgGtg2215192-5194
ORF1ab/nsp3825L825CL1643CnonsynCTGTGT2215192-5194

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3825L825LCtgTtg1281616215All0.002451
ORF1ab/nsp3825L825LctGctT246716215All0.000472
ORF1ab/nsp3825L825LctGctA91616215All0.000175
ORF1ab/nsp3825L825LctGctC1616215All0.000003
ORF1ab/nsp3825L825LCtgTtg24462446AY.630.946228
ORF1ab/nsp3825L825LCtgTtg19882280B.1.1.70.00178
ORF1ab/nsp3825L825LctGctT2582280B.1.1.70.000231
ORF1ab/nsp3825L825LctGctA342280B.1.1.70.00003
ORF1ab/nsp3825L825LCtgTtg19161916B.1.621.10.969145
ORF1ab/nsp3825L825LCtgTtg13771388B.1.6210.121891
ORF1ab/nsp3825L825LctGctA81388B.1.6210.000708
ORF1ab/nsp3825L825LctGctT31388B.1.6210.000266
ORF1ab/nsp3825L825LCtgTtg476899AY.40.000741
ORF1ab/nsp3825L825LctGctT338899AY.40.000526
ORF1ab/nsp3825L825LctGctA84899AY.40.000131
ORF1ab/nsp3825L825LctGctC1899AY.40.000002
ORF1ab/nsp3825L825LCtgTtg752752AY.580.682396
ORF1ab/nsp3825L825LctGctT608608B.1.1.700.207367
ORF1ab/nsp3825L825LCtgTtg353493B.1.617.20.001329
ORF1ab/nsp3825L825LctGctT109493B.1.617.20.00041
ORF1ab/nsp3825L825LctGctA31493B.1.617.20.000117
ORF1ab/nsp3825L825LctGctA430461B.1.1600.013411
ORF1ab/nsp3825L825LCtgTtg29461B.1.1600.000904
ORF1ab/nsp3825L825LctGctT2461B.1.1600.000062
ORF1ab/nsp3825L825LCtgTtg441445R.10.039694
ORF1ab/nsp3825L825LctGctT4445R.10.00036
ORF1ab/nsp3825L825LCtgTtg189294AY.430.000837
ORF1ab/nsp3825L825LctGctT84294AY.430.000372
ORF1ab/nsp3825L825LctGctA21294AY.430.000093
ORF1ab/nsp3825L825LCtgTtg247286AY.1030.001534
ORF1ab/nsp3825L825LctGctT27286AY.1030.000168
ORF1ab/nsp3825L825LctGctA12286AY.1030.000075
ORF1ab/nsp3825L825LCtgTtg184261B.1.20.00162
ORF1ab/nsp3825L825LctGctT76261B.1.20.000669
ORF1ab/nsp3825L825LctGctA1261B.1.20.000009
ORF1ab/nsp3825L825LCtgTtg234248AY.50.004832
ORF1ab/nsp3825L825LctGctT14248AY.50.000289
ORF1ab/nsp3825L825LCtgTtg197225AY.250.001185
ORF1ab/nsp3825L825LctGctT20225AY.250.00012
ORF1ab/nsp3825L825LctGctA8225AY.250.000048
ORF1ab/nsp3825L825LctGctT68156B.10.000623
ORF1ab/nsp3825L825LCtgTtg59156B.10.00054
ORF1ab/nsp3825L825LctGctA29156B.10.000266
ORF1ab/nsp3825L825MCtgAtg155155All0.00003
ORF1ab/nsp3825L825LctGctA135135B.1.160.180.985401
ORF1ab/nsp3825L825LCtgTtg132132B.1.6320.885906
ORF1ab/nsp3825L825LCtgTtg94117B.1.1770.001238
ORF1ab/nsp3825L825LctGctT15117B.1.1770.000198
ORF1ab/nsp3825L825LctGctA8117B.1.1770.000105
ORF1ab/nsp3825L825QcTgcAg110110All0.000021
ORF1ab/nsp3825L825LCtgTtg66109AY.440.000402
ORF1ab/nsp3825L825LctGctT37109AY.440.000225
ORF1ab/nsp3825L825LctGctA6109AY.440.000037
ORF1ab/nsp3825L825LCtgTtg107107AY.340.010375
ORF1ab/nsp3825L825LctGctT102106C.370.011838
ORF1ab/nsp3825L825LCtgTtg4106C.370.000464
ORF1ab/nsp3825L825LCtgTtg105105B.1.1.3510.293296
ORF1ab/nsp3825L825del1Ctg-tg8797All0.000017
ORF1ab/nsp3825L825del1ctGct-997All0.000002
ORF1ab/nsp3825L825del1cTGc-N197All0
ORF1ab/nsp3825L825LCtgTtg8085AY.260.002265
ORF1ab/nsp3825L825LctGctT485AY.260.000113
ORF1ab/nsp3825L825LctGctA185AY.260.000028
ORF1ab/nsp3825L825LctGctT6085B.1.5250.00679
ORF1ab/nsp3825L825LCtgTtg2585B.1.5250.002829
ORF1ab/nsp3825L825LCtgTtg5684P.10.000882
ORF1ab/nsp3825L825LctGctT2884P.10.000441
ORF1ab/nsp3825L825LctGctT4478AY.470.001369
ORF1ab/nsp3825L825LCtgTtg3378AY.470.001026
ORF1ab/nsp3825L825LctGctA178AY.470.000031
ORF1ab/nsp3825L825MCtgAtg7676B.1.1.70.000068
ORF1ab/nsp3825L825delCTG---7575All0.000014
ORF1ab/nsp3825L825LCtgTtg6272B.1.2430.004314
ORF1ab/nsp3825L825LctGctT1072B.1.2430.000696
ORF1ab/nsp3825L825LCtgTtg5170B.1.10.000925
ORF1ab/nsp3825L825LctGctT1670B.1.10.00029
ORF1ab/nsp3825L825LctGctA370B.1.10.000054
ORF1ab/nsp3825L825LCtgTtg6566AY.98.10.003148
ORF1ab/nsp3825L825LctGctA166AY.98.10.000048
ORF1ab/nsp3825L825del1Ctg-tg5559B.1.1.70.000049
ORF1ab/nsp3825L825del1ctGct-459B.1.1.70.000004
ORF1ab/nsp3825L825LCtgTtg5357AY.200.00206
ORF1ab/nsp3825L825LctGctT357AY.200.000117
ORF1ab/nsp3825L825LctGctA157AY.200.000039
ORF1ab/nsp3825L825LctGctT5757P.1.160.021324
ORF1ab/nsp3825L825LCtgTtg4150AY.750.002297
ORF1ab/nsp3825L825LctGctT850AY.750.000448
ORF1ab/nsp3825L825LctGctA150AY.750.000056
ORF1ab/nsp3825L825QcTgcAg4848AY.420.001931
ORF1ab/nsp3825L825LCtgTtg3647AY.99.20.003318
ORF1ab/nsp3825L825LctGctT1147AY.99.20.001014
ORF1ab/nsp3825L825LctGctT4444B.1.1.4320.055696
ORF1ab/nsp3825L825LCtgTtg2942AY.30.000288
ORF1ab/nsp3825L825LctGctT1242AY.30.000119
ORF1ab/nsp3825L825LctGctA142AY.30.00001
ORF1ab/nsp3825L825LCtgTtg2537AY.390.000618
ORF1ab/nsp3825L825LctGctA737AY.390.000173
ORF1ab/nsp3825L825LctGctT537AY.390.000124
ORF1ab/nsp3825L825LCtgTtg2234AY.1020.000583
ORF1ab/nsp3825L825LctGctT934AY.1020.000239
ORF1ab/nsp3825L825LctGctA334AY.1020.00008
ORF1ab/nsp3825L825LCtgTtg2933AY.1200.001078
ORF1ab/nsp3825L825LctGctT433AY.1200.000149
ORF1ab/nsp3825L825LCtgTtg2532B.1.1.5190.000993
ORF1ab/nsp3825L825LctGctT532B.1.1.5190.000199
ORF1ab/nsp3825L825LctGctA232B.1.1.5190.000079
ORF1ab/nsp3825L825LCtgTtg2831AY.1000.001288
ORF1ab/nsp3825L825LctGctT231AY.1000.000092
ORF1ab/nsp3825L825LctGctA131AY.1000.000046
ORF1ab/nsp3825L825LCtgTtg1029B.1.2210.00071
ORF1ab/nsp3825L825LctGctT1029B.1.2210.00071
ORF1ab/nsp3825L825LctGctA929B.1.2210.000639
ORF1ab/nsp3825L825LctGctA1927AY.230.001325
ORF1ab/nsp3825L825LCtgTtg427AY.230.000279
ORF1ab/nsp3825L825LctGctT427AY.230.000279
ORF1ab/nsp3825L825LCtgTtg1627B.1.4290.000376
ORF1ab/nsp3825L825LctGctT827B.1.4290.000188
ORF1ab/nsp3825L825LctGctA227B.1.4290.000047
ORF1ab/nsp3825L825LctGctC127B.1.4290.000024
ORF1ab/nsp3825L825LCtgTtg1826AY.610.001886
ORF1ab/nsp3825L825LctGctT826AY.610.000838
ORF1ab/nsp3825L825QcTgcAg2626B.1.1770.000342
ORF1ab/nsp3825L825LCtgTtg2424C.310.428571
ORF1ab/nsp3825L825del1Ctg-tg2222B.1.6210.001947
ORF1ab/nsp3825L825LCtgTtg1121AY.4.20.000239
ORF1ab/nsp3825L825LctGctT1021AY.4.20.000217
ORF1ab/nsp3825L825LCtgTtg1721AY.46.40.002797
ORF1ab/nsp3825L825LctGctT421AY.46.40.000658
ORF1ab/nsp3825L825LCtgTtg1520AY.75.10.002705
ORF1ab/nsp3825L825LctGctT520AY.75.10.000902
ORF1ab/nsp3825L825LCtgTtg1019B.1.4270.000505
ORF1ab/nsp3825L825LctGctT919B.1.4270.000454
ORF1ab/nsp3825L825LctGctT1519B.1.5260.000353
ORF1ab/nsp3825L825LCtgTtg319B.1.5260.000071
ORF1ab/nsp3825L825LctGctA119B.1.5260.000024
ORF1ab/nsp3825L825LCtgTtg1919P.1.100.00512
ORF1ab/nsp3825L825LCtgTtg1618AY.420.000644
ORF1ab/nsp3825L825LctGctA118AY.420.00004
ORF1ab/nsp3825L825LctGctT118AY.420.00004
ORF1ab/nsp3825L825LCtgTtg1818B.1.177.750.01873
ORF1ab/nsp3825L825LctGctT1518B.1.438.10.001609
ORF1ab/nsp3825L825LctGctA118B.1.438.10.000107
ORF1ab/nsp3825L825LCtgTtg118B.1.438.10.000107
ORF1ab/nsp3825L825LctGctC118B.1.438.10.000107
ORF1ab/nsp3825L825LCtgTtg1717B.1.160.140.036017
ORF1ab/nsp3825L825LCtgTtg1717B.1.5960.001481
ORF1ab/nsp3825L825LCtgTtg1516AY.360.002223
ORF1ab/nsp3825L825LctGctT116AY.360.000148
ORF1ab/nsp3825L825LCtgTtg1516AY.60.000617
ORF1ab/nsp3825L825LctGctT116AY.60.000041
ORF1ab/nsp3825L825LctGctT1316AY.880.011494
ORF1ab/nsp3825L825LCtgTtg316AY.880.002653
ORF1ab/nsp3825L825LCtgTtg1116P.1.140.000526
ORF1ab/nsp3825L825LctGctT516P.1.140.000239
ORF1ab/nsp3825L825LCtgTtg1015B.1.2580.000665
ORF1ab/nsp3825L825LctGctT515B.1.2580.000333
ORF1ab/nsp3825L825LCtgTtg1015B.1.3510.000297
ORF1ab/nsp3825L825LctGctT415B.1.3510.000119
ORF1ab/nsp3825L825LctGctA115B.1.3510.00003
ORF1ab/nsp3825L825LCtgTtg1214AY.290.000189
ORF1ab/nsp3825L825LctGctT214AY.290.000032
ORF1ab/nsp3825L825LCtgTtg1314AY.4.50.001397
ORF1ab/nsp3825L825LctGctT114AY.4.50.000107
ORF1ab/nsp3825L825LctGctT814AY.46.60.000578
ORF1ab/nsp3825L825LCtgTtg514AY.46.60.000361
ORF1ab/nsp3825L825LctGctA114AY.46.60.000072
ORF1ab/nsp3825L825delCTG---1414B.1.1.70.000013
ORF1ab/nsp3825L825LctGctT713AY.330.000467
ORF1ab/nsp3825L825LCtgTtg513AY.330.000334
ORF1ab/nsp3825L825LctGctA113AY.330.000067
ORF1ab/nsp3825L825LctGctT613AY.460.000624
ORF1ab/nsp3825L825LCtgTtg413AY.460.000416
ORF1ab/nsp3825L825LctGctA313AY.460.000312
ORF1ab/nsp3825L825delCTG---1313B.10.000119
ORF1ab/nsp3825L825LCtgTtg1013B.1.617.10.00129
ORF1ab/nsp3825L825LctGctA213B.1.617.10.000258
ORF1ab/nsp3825L825LctGctT113B.1.617.10.000129
ORF1ab/nsp3825L825LctGctT1313C.201
ORF1ab/nsp3825L825LctGctC812AY.90.000541
ORF1ab/nsp3825L825LCtgTtg412AY.90.00027
ORF1ab/nsp3825L825LCtgTtg1212B.1.4160.015228
ORF1ab/nsp3825L825LCtgTtg1112B.1.6230.005901
ORF1ab/nsp3825L825LctGctT112B.1.6230.000536
ORF1ab/nsp3825L825LctGctT911AY.120.10.002889
ORF1ab/nsp3825L825LCtgTtg211AY.120.10.000642
ORF1ab/nsp3825L825LCtgTtg711AY.1210.000947
ORF1ab/nsp3825L825LctGctT411AY.1210.000541
ORF1ab/nsp3825L825LCtgTtg611B.1.1.630.002315
ORF1ab/nsp3825L825LctGctT511B.1.1.630.001929
ORF1ab/nsp3825L825MCtgAtg1111B.1.177.460.010101
ORF1ab/nsp3825L825MCtgAtg1010A.2.50.00499
ORF1ab/nsp3825L825FCtGTtT1010All0.000002
ORF1ab/nsp3825L825PcTgcCg610All0.000001
ORF1ab/nsp3825L825PcTGcCA410All0.000001
ORF1ab/nsp3825L825MCtgAtg1010AY.40.000016
ORF1ab/nsp3825L825LctGctT610B.1.1.280.001867
ORF1ab/nsp3825L825LCtgTtg310B.1.1.280.000934
ORF1ab/nsp3825L825LctGctA110B.1.1.280.000311
ORF1ab/nsp3825L825LctGctA1010B.1.1.3690.004462
ORF1ab/nsp3825L825LCtgTtg1010B.1.4410.096154
ORF1ab/nsp3825L825QcTgcAg1010B.1.5750.003034
ORF1ab/nsp3825L825LCtgTtg910Q.10.001137
ORF1ab/nsp3825L825LctGctT110Q.10.000126
ORF1ab/nsp3825L825LCtgTtg99B.1.1.1530.009858
ORF1ab/nsp3825L825LCtgTtg68AY.5.40.00166
ORF1ab/nsp3825L825LctGctA28AY.5.40.000553
ORF1ab/nsp3825L825QcTgcAg88B.1.20.00007
ORF1ab/nsp3825L825LCtgTtg78B.1.258.170.000728
ORF1ab/nsp3825L825LctGctT18B.1.258.170.000104
ORF1ab/nsp3825L825LCtgTtg68B.1.360.000875
ORF1ab/nsp3825L825LctGctT28B.1.360.000292
ORF1ab/nsp3825L825LCtgTtg78Q.40.003183
ORF1ab/nsp3825L825LctGctT18Q.40.000455
ORF1ab/nsp3825L825MCtgAtg77AP.10.010511
ORF1ab/nsp3825L825LCtgTtg77AY.100.00371
ORF1ab/nsp3825L825LCtgTtg37AY.1190.000106
ORF1ab/nsp3825L825LctGctT37AY.1190.000106
ORF1ab/nsp3825L825LctGctC17AY.1190.000035
ORF1ab/nsp3825L825LctGctT57AY.39.10.000198
ORF1ab/nsp3825L825LCtgTtg27AY.39.10.000079
ORF1ab/nsp3825L825LCtgTtg57B.1.1.2940.006329
ORF1ab/nsp3825L825LctGctT27B.1.1.2940.002532
ORF1ab/nsp3825L825LctGctT77B.1.177.280.051852
ORF1ab/nsp3825L825LCtgTtg77B.1.177.320.009447
ORF1ab/nsp3825L825LCtgTtg77B.1.177.50.008696
ORF1ab/nsp3825L825LctGctT77B.1.177.510.031963
ORF1ab/nsp3825L825LCtgTtg77B.1.5820.003435
ORF1ab/nsp3825L825LCtgTtg56AY.1180.000313
ORF1ab/nsp3825L825LctGctT16AY.1180.000063
ORF1ab/nsp3825L825LctGctA46AY.140.000352
ORF1ab/nsp3825L825LctGctT16AY.140.000088
ORF1ab/nsp3825L825LCtgTtg16AY.140.000088
ORF1ab/nsp3825L825LctGctT56AY.16.10.00235
ORF1ab/nsp3825L825LCtgTtg16AY.16.10.00047
ORF1ab/nsp3825L825LCtgTtg56AY.300.001979
ORF1ab/nsp3825L825LctGctA16AY.300.000396
ORF1ab/nsp3825L825LCtgTtg66AY.450.00073
ORF1ab/nsp3825L825LctGctT66AY.46.20.003812
ORF1ab/nsp3825L825LCtgTtg56AY.46.50.000992
ORF1ab/nsp3825L825LctGctT16AY.46.50.000198
ORF1ab/nsp3825L825LCtgTtg66AY.5.30.002024
ORF1ab/nsp3825L825LctGctT66AY.7.10.000676
ORF1ab/nsp3825L825LctGctT56AY.740.000578
ORF1ab/nsp3825L825LCtgTtg16AY.740.000116
ORF1ab/nsp3825L825LCtgTtg66B.1.1.10.00196
ORF1ab/nsp3825L825LCtgTtg66B.1.3240.009631
ORF1ab/nsp3825L825LctGctT66B.1.3770.027397
ORF1ab/nsp3825L825LCtgTtg66B.1.4680.034286
ORF1ab/nsp3825L825LCtgTtg46D.20.0003
ORF1ab/nsp3825L825LctGctC16D.20.000075
ORF1ab/nsp3825L825LctGctT16D.20.000075
ORF1ab/nsp3825L825LctGctT46P.1.170.000647
ORF1ab/nsp3825L825LCtgTtg26P.1.170.000324
ORF1ab/nsp3825L825LCtgTtg66P.1.20.006936
ORF1ab/nsp3825L825LctGctT46P.20.000747
ORF1ab/nsp3825L825LCtgTtg26P.20.000373
ORF1ab/nsp3825L825MCtgAtg55AY.1030.000031
ORF1ab/nsp3825L825LctGctA45AY.3.10.000341
ORF1ab/nsp3825L825LctGctT15AY.3.10.000085
ORF1ab/nsp3825L825MCtgAtg55AY.410.00147
ORF1ab/nsp3825L825LctGctT45AY.46.10.004107
ORF1ab/nsp3825L825LctGctA15AY.46.10.001027
ORF1ab/nsp3825L825LctGctT35AY.690.00056
ORF1ab/nsp3825L825LCtgTtg25AY.690.000373
ORF1ab/nsp3825L825LctGctT35AY.850.001282
ORF1ab/nsp3825L825LCtgTtg25AY.850.000854
ORF1ab/nsp3825L825LCtgTtg45AY.9.20.000147
ORF1ab/nsp3825L825LctGctA15AY.9.20.000037
ORF1ab/nsp3825L825delCTG---55B.1.10.000091
ORF1ab/nsp3825L825LCtgTtg35B.1.1.2220.000612
ORF1ab/nsp3825L825LctGctT25B.1.1.2220.000408
ORF1ab/nsp3825L825LCtgTtg35B.1.1.250.001706
ORF1ab/nsp3825L825LctGctT25B.1.1.250.001137
ORF1ab/nsp3825L825LCtgTtg45B.1.1.4340.001394
ORF1ab/nsp3825L825LctGctT15B.1.1.4340.000349
ORF1ab/nsp3825L825LctGctT55B.1.160.280.01462
ORF1ab/nsp3825L825LctGctA55B.1.160.320.021459
ORF1ab/nsp3825L825LCtgTtg55B.1.177.720.016949
ORF1ab/nsp3825L825LCtgTtg55B.1.177.860.000917
ORF1ab/nsp3825L825LCtgTtg55C.140.021645
ORF1ab/nsp3825L825LctGctT44A0.001548
ORF1ab/nsp3825L825RcTgcGg44All0.000001
ORF1ab/nsp3825L825LCtgTtg44AY.1090.002959
ORF1ab/nsp3825L825LCtgTtg34AY.130.000483
ORF1ab/nsp3825L825LctGctT14AY.130.000161
ORF1ab/nsp3825L825QcTgcAg44AY.40.000006
ORF1ab/nsp3825L825LCtgTtg24AY.540.000191
ORF1ab/nsp3825L825LctGctT24AY.540.000191
ORF1ab/nsp3825L825LCtgTtg44AY.980.000316
ORF1ab/nsp3825L825LCtgTtg44B.1.1.2490.285714
ORF1ab/nsp3825L825LctGctA24B.1.177.80.001505
ORF1ab/nsp3825L825LCtgTtg24B.1.177.80.001505
ORF1ab/nsp3825L825LCtgTtg44B.1.3690.001141
ORF1ab/nsp3825L825LctGctT44B.1.5700.011765
ORF1ab/nsp3825L825FCtGTtT44B.1.621.10.002023
ORF1ab/nsp3825L825LctGctT44B.6.60.003556
ORF1ab/nsp3825L825MCtgAtg44C.370.000464
ORF1ab/nsp3825L825LCtgTtg24Q.80.00033
ORF1ab/nsp3825L825LctGctA14Q.80.000165
ORF1ab/nsp3825L825LctGctT14Q.80.000165
ORF1ab/nsp3825L825LctGctT23A.280.005291
ORF1ab/nsp3825L825LCtgTtg13A.280.002646
ORF1ab/nsp3825L825LctGctT33AD.20.000657
ORF1ab/nsp3825L825LCtgTtg33AY.1170.000254
ORF1ab/nsp3825L825LCtgTtg33AY.270.000194
ORF1ab/nsp3825L825MCtgAtg33AY.30.00003
ORF1ab/nsp3825L825LCtgTtg23AY.4.2.10.000298
ORF1ab/nsp3825L825LctGctT13AY.4.2.10.000149
ORF1ab/nsp3825L825LCtgTtg23AY.410.000588
ORF1ab/nsp3825L825LctGctT13AY.410.000294
ORF1ab/nsp3825L825delCTG---33AY.430.000013
ORF1ab/nsp3825L825LCtgTtg33AY.600.002814
ORF1ab/nsp3825L825LCtgTtg23AY.680.000547
ORF1ab/nsp3825L825LctGctT13AY.680.000274
ORF1ab/nsp3825L825LctGctT33AY.770.003382
ORF1ab/nsp3825L825LCtgTtg23AY.9.10.000167
ORF1ab/nsp3825L825LctGctT13AY.9.10.000084
ORF1ab/nsp3825L825LCtgTtg33B0.000383
ORF1ab/nsp3825L825LCtgTtg33B.1.1.2370.016216
ORF1ab/nsp3825L825LCtgTtg33B.1.1.2430.012245
ORF1ab/nsp3825L825LctGctT33B.1.1.4650.046875
ORF1ab/nsp3825L825PcTgcCg23B.1.1.70.000002
ORF1ab/nsp3825L825PcTGcCA13B.1.1.70.000001
ORF1ab/nsp3825L825LctGctT33B.1.110.30.002155
ORF1ab/nsp3825L825MCtgAtg33B.1.177.520.005272
ORF1ab/nsp3825L825LCtgTtg23B.1.177.560.001335
ORF1ab/nsp3825L825LctGctC13B.1.177.560.000668
ORF1ab/nsp3825L825LCtgTtg33B.1.177.770.002179
ORF1ab/nsp3825L825LCtgTtg33B.1.1990.012397
ORF1ab/nsp3825L825del1Ctg-tg23B.1.20.000018
ORF1ab/nsp3825L825del1ctGct-13B.1.20.000009
ORF1ab/nsp3825L825LCtgTtg33B.1.2370.014925
ORF1ab/nsp3825L825LctGctT33B.1.351.20.000908
ORF1ab/nsp3825L825LCtgTtg33B.1.5750.00091
ORF1ab/nsp3825L825LCtgTtg33B.1.6090.001438
ORF1ab/nsp3825L825QcTgcAg33B.1.617.20.000011
ORF1ab/nsp3825L825delCTG---33B.1.617.20.000011
ORF1ab/nsp3825L825FCtGTtT33B.1.6210.000266
ORF1ab/nsp3825L825LCtgTtg33B.1.6370.000219
ORF1ab/nsp3825L825LCtgTtg33C.36.30.001702
ORF1ab/nsp3825L825LCtgTtg23P.1.10.000635
ORF1ab/nsp3825L825LctGctT13P.1.10.000318
ORF1ab/nsp3825L825LctGctT33P.1.90.014423
ORF1ab/nsp3825L825LctGctA220.111111
ORF1ab/nsp3825L825SCTgTCg220.111111
ORF1ab/nsp3825L825delCTG---220.111111
ORF1ab/nsp3825L825PcTGcCA220.111111
ORF1ab/nsp3825L825LctGctT12A.2.50.000499
ORF1ab/nsp3825L825LctGctA12A.2.50.000499
ORF1ab/nsp3825L825LCtgTtg22A.23.10.001408
ORF1ab/nsp3825L825LCtgTtg22AE.80.000978
ORF1ab/nsp3825L825VCtgGtg22All0
ORF1ab/nsp3825L825SCTgTCg22All0
ORF1ab/nsp3825L825CCTGTGT22All0
ORF1ab/nsp3825L825LctGctT22AP.10.003003
ORF1ab/nsp3825L825LCtgTtg12AY.1010.00049
ORF1ab/nsp3825L825LctGctT12AY.1010.00049
ORF1ab/nsp3825L825LCtgTtg22AY.1130.000285
ORF1ab/nsp3825L825LctGctA22AY.116.10.000623
ORF1ab/nsp3825L825LCtgTtg12AY.160.00038
ORF1ab/nsp3825L825LctGctT12AY.160.00038
ORF1ab/nsp3825L825LCtgTtg22AY.190.002281
ORF1ab/nsp3825L825LctGctT22AY.23.10.000835
ORF1ab/nsp3825L825MCtgAtg22AY.250.000012
ORF1ab/nsp3825L825LCtgTtg22AY.29.10.000441
ORF1ab/nsp3825L825LCtgTtg12AY.320.000532
ORF1ab/nsp3825L825LctGctT12AY.320.000532
ORF1ab/nsp3825L825MCtgAtg22AY.39.10.000079
ORF1ab/nsp3825L825delCTG---22AY.40.000003
ORF1ab/nsp3825L825LCtgTtg22AY.640.00119
ORF1ab/nsp3825L825LCtgTtg22AY.660.002139
ORF1ab/nsp3825L825LCtgTtg22AY.700.000417
ORF1ab/nsp3825L825LCtgTtg22AY.840.000875
ORF1ab/nsp3825L825LCtgTtg12AY.940.000443
ORF1ab/nsp3825L825LctGctT12AY.940.000443
ORF1ab/nsp3825L825MCtgAtg22B.10.000018
ORF1ab/nsp3825L825QcTgcAg22B.10.000018
ORF1ab/nsp3825L825del1cTGc-N12B.10.000009
ORF1ab/nsp3825L825del1Ctg-tg12B.10.000009
ORF1ab/nsp3825L825MCtgAtg22B.1.10.000036
ORF1ab/nsp3825L825LCtgTtg22B.1.1.2070.002364
ORF1ab/nsp3825L825LctGctT12B.1.1.2140.000055
ORF1ab/nsp3825L825LCtgTtg12B.1.1.2140.000055
ORF1ab/nsp3825L825LCtgTtg12B.1.1.2160.00089
ORF1ab/nsp3825L825LctGctA12B.1.1.2160.00089
ORF1ab/nsp3825L825LCtgTtg22B.1.1.2410.004141
ORF1ab/nsp3825L825LCtgTtg22B.1.1.2840.000215
ORF1ab/nsp3825L825LctGctT22B.1.1.3480.001592
ORF1ab/nsp3825L825LCtgTtg22B.1.1.3720.001377
ORF1ab/nsp3825L825LctGctA12B.1.1.390.00051
ORF1ab/nsp3825L825LCtgTtg12B.1.1.390.00051
ORF1ab/nsp3825L825CCTGTGT22B.1.1.70.000002
ORF1ab/nsp3825L825LctGctT12B.1.1390.000733
ORF1ab/nsp3825L825LCtgTtg12B.1.1390.000733
ORF1ab/nsp3825L825del1Ctg-tg22B.1.1770.000026
ORF1ab/nsp3825L825delCTG---22B.1.1770.000026
ORF1ab/nsp3825L825LCtgTtg22B.1.177.150.001262
ORF1ab/nsp3825L825LCtgTtg22B.1.177.160.001329
ORF1ab/nsp3825L825LCtgTtg22B.1.177.40.000422
ORF1ab/nsp3825L825QcTgcAg22B.1.177.860.000367
ORF1ab/nsp3825L825LCtgTtg22B.1.214.10.04
ORF1ab/nsp3825L825LCtgTtg22B.1.2340.000264
ORF1ab/nsp3825L825LctGctT22B.1.243.10.044444
ORF1ab/nsp3825L825LctGctT12B.1.3200.001245
ORF1ab/nsp3825L825LCtgTtg12B.1.3200.001245
ORF1ab/nsp3825L825delCTG---22B.1.360.000292
ORF1ab/nsp3825L825LctGctA22B.1.4050.024691
ORF1ab/nsp3825L825LCtgTtg22B.1.4080.00738
ORF1ab/nsp3825L825LctGctT22B.1.4700.002809
ORF1ab/nsp3825L825LCtgTtg22B.1.4710.005464
ORF1ab/nsp3825L825LctGctT22B.1.4800.004975
ORF1ab/nsp3825L825LctGctT22B.1.4970.00063
ORF1ab/nsp3825L825QcTgcAg22B.1.5250.000226
ORF1ab/nsp3825L825LctGctT12B.1.5610.000397
ORF1ab/nsp3825L825LCtgTtg12B.1.5610.000397
ORF1ab/nsp3825L825MCtgAtg22B.1.5750.000607
ORF1ab/nsp3825L825LCtgTtg22B.1.5880.00182
ORF1ab/nsp3825L825LCtgTtg22B.1.5950.000522
ORF1ab/nsp3825L825delCTG---22B.1.617.10.000258
ORF1ab/nsp3825L825del1Ctg-tg22B.1.621.10.001012
ORF1ab/nsp3825L825delCTG---22B.1.9.50.011364
ORF1ab/nsp3825L825LCtgTtg22C.1.20.008511
ORF1ab/nsp3825L825LctGctT22C.160.002121
ORF1ab/nsp3825L825RcTgcGg22D.20.00015
ORF1ab/nsp3825L825LCtgTtg22P.1.150.000465
ORF1ab/nsp3825L825LctGctT11A.20.000662
ORF1ab/nsp3825L825LCtgTtg11A.2.20.001689
ORF1ab/nsp3825L825delCTG---11A.2.20.001689
ORF1ab/nsp3825L825LCtgTtg11A.2.40.003367
ORF1ab/nsp3825L825LCtgTtg11AM.40.003571
ORF1ab/nsp3825L825LCtgTtg11AT.10.005128
ORF1ab/nsp3825L825LctGctA11AY.1050.000643
ORF1ab/nsp3825L825LCtgTtg11AY.1070.000466
ORF1ab/nsp3825L825LctGctT11AY.1080.001103
ORF1ab/nsp3825L825LctGctT11AY.110.001339
ORF1ab/nsp3825L825LCtgTtg11AY.1100.000113
ORF1ab/nsp3825L825LctGctT11AY.1140.000231
ORF1ab/nsp3825L825LctGctA11AY.1160.000287
ORF1ab/nsp3825L825delCTG---11AY.1200.000037
ORF1ab/nsp3825L825LCtgTtg11AY.120.20.001285
ORF1ab/nsp3825L825delCTG---11AY.250.000006
ORF1ab/nsp3825L825FCtGTtT11AY.260.000028
ORF1ab/nsp3825L825LCtgTtg11AY.280.00189
ORF1ab/nsp3825L825PcTgcCg11AY.30.00001
ORF1ab/nsp3825L825QcTgcAg11AY.30.00001
ORF1ab/nsp3825L825QcTgcAg11AY.34.10.00051
ORF1ab/nsp3825L825LctGctA11AY.350.000233
ORF1ab/nsp3825L825LctGctT11AY.370.000316
ORF1ab/nsp3825L825LctGctA11AY.4.10.000737
ORF1ab/nsp3825L825LctGctT11AY.4.30.000842
ORF1ab/nsp3825L825delCTG---11AY.4.50.000107
ORF1ab/nsp3825L825del1ctGct-11AY.420.00004
ORF1ab/nsp3825L825del1ctGct-11AY.430.000004
ORF1ab/nsp3825L825MCtgAtg11AY.430.000004
ORF1ab/nsp3825L825RcTgcGg11AY.430.000004
ORF1ab/nsp3825L825PcTGcCA11AY.440.000006
ORF1ab/nsp3825L825QcTgcAg11AY.440.000006
ORF1ab/nsp3825L825del1ctGct-11AY.440.000006
ORF1ab/nsp3825L825delCTG---11AY.46.20.000635
ORF1ab/nsp3825L825LctGctT11AY.480.000465
ORF1ab/nsp3825L825PcTgcCg11AY.50.000021
ORF1ab/nsp3825L825MCtgAtg11AY.50.000021
ORF1ab/nsp3825L825FCtGTtT11AY.50.000021
ORF1ab/nsp3825L825MCtgAtg11AY.5.30.000337
ORF1ab/nsp3825L825LctGctT11AY.500.000799
ORF1ab/nsp3825L825LctGctT11AY.530.000288
ORF1ab/nsp3825L825LctGctT11AY.570.000656
ORF1ab/nsp3825L825del1Ctg-tg11AY.580.000907
ORF1ab/nsp3825L825LCtgTtg11AY.590.00053
ORF1ab/nsp3825L825del1Ctg-tg11AY.630.000387
ORF1ab/nsp3825L825LCtgTtg11AY.7.20.000559
ORF1ab/nsp3825L825delCTG---11AY.750.000056
ORF1ab/nsp3825L825QcTgcAg11AY.750.000056
ORF1ab/nsp3825L825LCtgTtg11AY.80.000606
ORF1ab/nsp3825L825LCtgTtg11AY.800.001129
ORF1ab/nsp3825L825MCtgAtg11AY.850.000427
ORF1ab/nsp3825L825LctGctA11AY.910.00073
ORF1ab/nsp3825L825LCtgTtg11AY.920.000287
ORF1ab/nsp3825L825LCtgTtg11AY.950.000761
ORF1ab/nsp3825L825LCtgTtg11AY.960.002075
ORF1ab/nsp3825L825LctGctT11AY.970.001701
ORF1ab/nsp3825L825MCtgAtg11AY.98.10.000048
ORF1ab/nsp3825L825LCtgTtg11AZ.20.000821
ORF1ab/nsp3825L825LCtgTtg11AZ.30.00152
ORF1ab/nsp3825L825VCtgGtg11B.1.10.000018
ORF1ab/nsp3825L825LctGctT11B.1.1.100.001115
ORF1ab/nsp3825L825LctGctC11B.1.1.1340.011364
ORF1ab/nsp3825L825delCTG---11B.1.1.1420.017544
ORF1ab/nsp3825L825LctGctT11B.1.1.1980.001468
ORF1ab/nsp3825L825LCtgTtg11B.1.1.2050.003717
ORF1ab/nsp3825L825LCtgTtg11B.1.1.2310.003096
ORF1ab/nsp3825L825LCtgTtg11B.1.1.2650.003155
ORF1ab/nsp3825L825LCtgTtg11B.1.1.2750.011236
ORF1ab/nsp3825L825LctGctT11B.1.1.2800.003086
ORF1ab/nsp3825L825LctGctT11B.1.1.2830.023256
ORF1ab/nsp3825L825LctGctT11B.1.1.2890.002083
ORF1ab/nsp3825L825LCtgTtg11B.1.1.2910.000742
ORF1ab/nsp3825L825PcTgcCg11B.1.1.3060.000438
ORF1ab/nsp3825L825LCtgTtg11B.1.1.3060.000438
ORF1ab/nsp3825L825LctGctT11B.1.1.3070.002532
ORF1ab/nsp3825L825LCtgTtg11B.1.1.3110.000358
ORF1ab/nsp3825L825delCTG---11B.1.1.3150.008475
ORF1ab/nsp3825L825LctGctT11B.1.1.3160.000925
ORF1ab/nsp3825L825LCtgTtg11B.1.1.3170.000412
ORF1ab/nsp3825L825LctGctT11B.1.1.3180.000302
ORF1ab/nsp3825L825LctGctT11B.1.1.3260.001761
ORF1ab/nsp3825L825LCtgTtg11B.1.1.3290.003846
ORF1ab/nsp3825L825LCtgTtg11B.1.1.330.000421
ORF1ab/nsp3825L825LCtgTtg11B.1.1.3490.010309
ORF1ab/nsp3825L825delCTG---11B.1.1.3660.015873
ORF1ab/nsp3825L825LCtgTtg11B.1.1.370.000193
ORF1ab/nsp3825L825LctGctT11B.1.1.3910.008547
ORF1ab/nsp3825L825LCtgTtg11B.1.1.3970.002252
ORF1ab/nsp3825L825MCtgAtg11B.1.1.4110.014706
ORF1ab/nsp3825L825LCtgTtg11B.1.1.4170.002703
ORF1ab/nsp3825L825LCtgTtg11B.1.1.4620.008621
ORF1ab/nsp3825L825LCtgTtg11B.1.1.4640.001473
ORF1ab/nsp3825L825LCtgTtg11B.1.1.4860.001577
ORF1ab/nsp3825L825delCTG---11B.1.1.5190.00004
ORF1ab/nsp3825L825delCTG---11B.1.1.5210.005348
ORF1ab/nsp3825L825FCtGTtT11B.1.1.70.000001
ORF1ab/nsp3825L825RcTgcGg11B.1.1.70.000001
ORF1ab/nsp3825L825delCTG---11B.1.1400.018868
ORF1ab/nsp3825L825LctGctT11B.1.1430.021277
ORF1ab/nsp3825L825LctGctT11B.1.160.160.000929
ORF1ab/nsp3825L825PcTgcCg11B.1.160.250.011111
ORF1ab/nsp3825L825MCtgAtg11B.1.1770.000013
ORF1ab/nsp3825L825LctGctT11B.1.177.100.000878
ORF1ab/nsp3825L825delCTG---11B.1.177.210.000076
ORF1ab/nsp3825L825LCtgTtg11B.1.177.440.000519
ORF1ab/nsp3825L825LCtgTtg11B.1.177.570.000281
ORF1ab/nsp3825L825delCTG---11B.1.177.620.001192
ORF1ab/nsp3825L825LCtgTtg11B.1.177.630.002703
ORF1ab/nsp3825L825delCTG---11B.1.177.680.015152
ORF1ab/nsp3825L825LctGctT11B.1.177.690.001484
ORF1ab/nsp3825L825delCTG---11B.1.177.810.000189
ORF1ab/nsp3825L825LCtgTtg11B.1.214.20.0006
ORF1ab/nsp3825L825del1Ctg-tg11B.1.214.20.0006
ORF1ab/nsp3825L825LCtgTtg11B.1.221.10.002907
ORF1ab/nsp3825L825LCtgTtg11B.1.2220.001692
ORF1ab/nsp3825L825LCtgTtg11B.1.2400.000216
ORF1ab/nsp3825L825LctGctT11B.1.2410.000812
ORF1ab/nsp3825L825LctGctT11B.1.2470.014925
ORF1ab/nsp3825L825LCtgTtg11B.1.258.110.000396
ORF1ab/nsp3825L825LCtgTtg11B.1.3110.000275
ORF1ab/nsp3825L825LCtgTtg11B.1.3150.006061
ORF1ab/nsp3825L825delCTG---11B.1.3190.003049
ORF1ab/nsp3825L825LCtgTtg11B.1.3320.003497
ORF1ab/nsp3825L825VCtgGtg11B.1.351.20.000303
ORF1ab/nsp3825L825LCtgTtg11B.1.351.30.000876
ORF1ab/nsp3825L825MCtgAtg11B.1.360.000146
ORF1ab/nsp3825L825LctGctT11B.1.36.10.00114
ORF1ab/nsp3825L825LctGctT11B.1.36.220.001208
ORF1ab/nsp3825L825LctGctT11B.1.36.290.000517
ORF1ab/nsp3825L825LctGctT11B.1.36.80.001
ORF1ab/nsp3825L825LctGctC11B.1.4000.000429
ORF1ab/nsp3825L825LCtgTtg11B.1.4090.000781
ORF1ab/nsp3825L825delCTG---11B.1.4150.014286
ORF1ab/nsp3825L825delCTG---11B.1.416.10.001563
ORF1ab/nsp3825L825MCtgAtg11B.1.4270.00005
ORF1ab/nsp3825L825MCtgAtg11B.1.4280.00102
ORF1ab/nsp3825L825LctGctT11B.1.4360.001029
ORF1ab/nsp3825L825LctGctT11B.1.4510.008197
ORF1ab/nsp3825L825LctGctT11B.1.4520.013699
ORF1ab/nsp3825L825LctGctT11B.1.4620.007246
ORF1ab/nsp3825L825LCtgTtg11B.1.466.20.000391
ORF1ab/nsp3825L825LctGctT11B.1.5030.002488
ORF1ab/nsp3825L825LctGctT11B.1.5160.001957
ORF1ab/nsp3825L825LCtgTtg11B.1.5410.004425
ORF1ab/nsp3825L825LCtgTtg11B.1.5430.01
ORF1ab/nsp3825L825LctGctT11B.1.5460.003704
ORF1ab/nsp3825L825LCtgTtg11B.1.5510.00129
ORF1ab/nsp3825L825LCtgTtg11B.1.5600.00463
ORF1ab/nsp3825L825LCtgTtg11B.1.5680.001111
ORF1ab/nsp3825L825LctGctT11B.1.575.10.002439
ORF1ab/nsp3825L825delCTG---11B.1.5760.000907
ORF1ab/nsp3825L825LCtgTtg11B.1.5770.000687
ORF1ab/nsp3825L825LCtgTtg11B.1.5800.004065
ORF1ab/nsp3825L825LCtgTtg11B.1.5890.007576
ORF1ab/nsp3825L825LCtgTtg11B.1.5910.010638
ORF1ab/nsp3825L825QcTgcAg11B.1.5960.000087
ORF1ab/nsp3825L825MCtgAtg11B.1.617.20.000004
ORF1ab/nsp3825L825delCTG---11B.1.6210.000089
ORF1ab/nsp3825L825LCtgTtg11B.1.6270.00202
ORF1ab/nsp3825L825LCtgTtg11B.1.6300.005236
ORF1ab/nsp3825L825LctGctT11B.1.90.006173
ORF1ab/nsp3825L825LCtgTtg11B.1.910.002075
ORF1ab/nsp3825L825delCTG---11B.150.017544
ORF1ab/nsp3825L825LCtgTtg11B.400.000364
ORF1ab/nsp3825L825LCtgTtg11B.520.010101
ORF1ab/nsp3825L825delCTG---11B.610.005747
ORF1ab/nsp3825L825LCtgTtg11C.1.10.076923
ORF1ab/nsp3825L825LctGctT11C.260.007353
ORF1ab/nsp3825L825delCTG---11C.350.000774
ORF1ab/nsp3825L825delCTG---11C.370.000116
ORF1ab/nsp3825L825LctGctT11P.1.120.000484
ORF1ab/nsp3825L825LctGctT11P.60.003145
ORF1ab/nsp3825L825LCtgTtg11Q.30.000145
ORF1ab/nsp3825L825del1ctGct-11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.