CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 825 | L825L | L1643L | syn | Ctg | Ttg | 16215 | 12816 | 0.790379 | 5192-5194 |
ORF1ab/nsp3 | 825 | L825L | L1643L | syn | ctG | ctT | 16215 | 2467 | 0.152143 | 5192-5194 |
ORF1ab/nsp3 | 825 | L825L | L1643L | syn | ctG | ctA | 16215 | 916 | 0.0564909 | 5192-5194 |
ORF1ab/nsp3 | 825 | L825L | L1643L | syn | ctG | ctC | 16215 | 16 | 0.000986741 | 5192-5194 |
ORF1ab/nsp3 | 825 | L825M | L1643M | nonsyn | Ctg | Atg | 155 | 155 | 1 | 5192-5194 |
ORF1ab/nsp3 | 825 | L825Q | L1643Q | nonsyn | cTg | cAg | 110 | 110 | 1 | 5192-5194 |
ORF1ab/nsp3 | 825 | L825del1 | L1643del1 | del | Ctg | -tg | 97 | 87 | 0.896907 | 5192-5194 |
ORF1ab/nsp3 | 825 | L825del1 | L1643del1 | del | ctG | ct- | 97 | 9 | 0.0927835 | 5192-5194 |
ORF1ab/nsp3 | 825 | L825del1 | L1643del1 | del | cTG | c-N | 97 | 1 | 0.0103093 | 5192-5194 |
ORF1ab/nsp3 | 825 | L825del | L1643del | del | CTG | --- | 75 | 75 | 1 | 5192-5194 |
ORF1ab/nsp3 | 825 | L825F | L1643F | nonsyn | CtG | TtT | 10 | 10 | 1 | 5192-5194 |
ORF1ab/nsp3 | 825 | L825P | L1643P | nonsyn | cTg | cCg | 10 | 6 | 0.6 | 5192-5194 |
ORF1ab/nsp3 | 825 | L825P | L1643P | nonsyn | cTG | cCA | 10 | 4 | 0.4 | 5192-5194 |
ORF1ab/nsp3 | 825 | L825R | L1643R | nonsyn | cTg | cGg | 4 | 4 | 1 | 5192-5194 |
ORF1ab/nsp3 | 825 | L825S | L1643S | nonsyn | CTg | TCg | 2 | 2 | 1 | 5192-5194 |
ORF1ab/nsp3 | 825 | L825V | L1643V | nonsyn | Ctg | Gtg | 2 | 2 | 1 | 5192-5194 |
ORF1ab/nsp3 | 825 | L825C | L1643C | nonsyn | CTG | TGT | 2 | 2 | 1 | 5192-5194 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 12816 | 16215 | All | 0.002451 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 2467 | 16215 | All | 0.000472 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 916 | 16215 | All | 0.000175 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctC | 16 | 16215 | All | 0.000003 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2446 | 2446 | AY.63 | 0.946228 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1988 | 2280 | B.1.1.7 | 0.00178 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 258 | 2280 | B.1.1.7 | 0.000231 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 34 | 2280 | B.1.1.7 | 0.00003 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1916 | 1916 | B.1.621.1 | 0.969145 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1377 | 1388 | B.1.621 | 0.121891 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 8 | 1388 | B.1.621 | 0.000708 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 3 | 1388 | B.1.621 | 0.000266 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 476 | 899 | AY.4 | 0.000741 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 338 | 899 | AY.4 | 0.000526 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 84 | 899 | AY.4 | 0.000131 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctC | 1 | 899 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 752 | 752 | AY.58 | 0.682396 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 608 | 608 | B.1.1.70 | 0.207367 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 353 | 493 | B.1.617.2 | 0.001329 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 109 | 493 | B.1.617.2 | 0.00041 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 31 | 493 | B.1.617.2 | 0.000117 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 430 | 461 | B.1.160 | 0.013411 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 29 | 461 | B.1.160 | 0.000904 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 2 | 461 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 441 | 445 | R.1 | 0.039694 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 4 | 445 | R.1 | 0.00036 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 189 | 294 | AY.43 | 0.000837 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 84 | 294 | AY.43 | 0.000372 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 21 | 294 | AY.43 | 0.000093 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 247 | 286 | AY.103 | 0.001534 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 27 | 286 | AY.103 | 0.000168 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 12 | 286 | AY.103 | 0.000075 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 184 | 261 | B.1.2 | 0.00162 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 76 | 261 | B.1.2 | 0.000669 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 1 | 261 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 234 | 248 | AY.5 | 0.004832 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 14 | 248 | AY.5 | 0.000289 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 197 | 225 | AY.25 | 0.001185 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 20 | 225 | AY.25 | 0.00012 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 8 | 225 | AY.25 | 0.000048 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 68 | 156 | B.1 | 0.000623 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 59 | 156 | B.1 | 0.00054 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 29 | 156 | B.1 | 0.000266 |
ORF1ab/nsp3 | 825 | L825M | Ctg | Atg | 155 | 155 | All | 0.00003 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 135 | 135 | B.1.160.18 | 0.985401 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 132 | 132 | B.1.632 | 0.885906 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 94 | 117 | B.1.177 | 0.001238 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 15 | 117 | B.1.177 | 0.000198 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 8 | 117 | B.1.177 | 0.000105 |
ORF1ab/nsp3 | 825 | L825Q | cTg | cAg | 110 | 110 | All | 0.000021 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 66 | 109 | AY.44 | 0.000402 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 37 | 109 | AY.44 | 0.000225 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 6 | 109 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 107 | 107 | AY.34 | 0.010375 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 102 | 106 | C.37 | 0.011838 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 4 | 106 | C.37 | 0.000464 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 105 | 105 | B.1.1.351 | 0.293296 |
ORF1ab/nsp3 | 825 | L825del1 | Ctg | -tg | 87 | 97 | All | 0.000017 |
ORF1ab/nsp3 | 825 | L825del1 | ctG | ct- | 9 | 97 | All | 0.000002 |
ORF1ab/nsp3 | 825 | L825del1 | cTG | c-N | 1 | 97 | All | 0 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 80 | 85 | AY.26 | 0.002265 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 4 | 85 | AY.26 | 0.000113 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 1 | 85 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 60 | 85 | B.1.525 | 0.00679 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 25 | 85 | B.1.525 | 0.002829 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 56 | 84 | P.1 | 0.000882 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 28 | 84 | P.1 | 0.000441 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 44 | 78 | AY.47 | 0.001369 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 33 | 78 | AY.47 | 0.001026 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 1 | 78 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 825 | L825M | Ctg | Atg | 76 | 76 | B.1.1.7 | 0.000068 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 75 | 75 | All | 0.000014 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 62 | 72 | B.1.243 | 0.004314 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 10 | 72 | B.1.243 | 0.000696 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 51 | 70 | B.1.1 | 0.000925 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 16 | 70 | B.1.1 | 0.00029 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 3 | 70 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 65 | 66 | AY.98.1 | 0.003148 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 1 | 66 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 825 | L825del1 | Ctg | -tg | 55 | 59 | B.1.1.7 | 0.000049 |
ORF1ab/nsp3 | 825 | L825del1 | ctG | ct- | 4 | 59 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 53 | 57 | AY.20 | 0.00206 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 3 | 57 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 1 | 57 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 57 | 57 | P.1.16 | 0.021324 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 41 | 50 | AY.75 | 0.002297 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 8 | 50 | AY.75 | 0.000448 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 1 | 50 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 825 | L825Q | cTg | cAg | 48 | 48 | AY.42 | 0.001931 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 36 | 47 | AY.99.2 | 0.003318 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 11 | 47 | AY.99.2 | 0.001014 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 44 | 44 | B.1.1.432 | 0.055696 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 29 | 42 | AY.3 | 0.000288 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 12 | 42 | AY.3 | 0.000119 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 1 | 42 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 25 | 37 | AY.39 | 0.000618 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 7 | 37 | AY.39 | 0.000173 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 5 | 37 | AY.39 | 0.000124 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 22 | 34 | AY.102 | 0.000583 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 9 | 34 | AY.102 | 0.000239 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 3 | 34 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 29 | 33 | AY.120 | 0.001078 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 4 | 33 | AY.120 | 0.000149 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 25 | 32 | B.1.1.519 | 0.000993 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 5 | 32 | B.1.1.519 | 0.000199 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 2 | 32 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 28 | 31 | AY.100 | 0.001288 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 2 | 31 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 1 | 31 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 10 | 29 | B.1.221 | 0.00071 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 10 | 29 | B.1.221 | 0.00071 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 9 | 29 | B.1.221 | 0.000639 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 19 | 27 | AY.23 | 0.001325 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 4 | 27 | AY.23 | 0.000279 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 4 | 27 | AY.23 | 0.000279 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 16 | 27 | B.1.429 | 0.000376 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 8 | 27 | B.1.429 | 0.000188 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 2 | 27 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctC | 1 | 27 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 18 | 26 | AY.61 | 0.001886 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 8 | 26 | AY.61 | 0.000838 |
ORF1ab/nsp3 | 825 | L825Q | cTg | cAg | 26 | 26 | B.1.177 | 0.000342 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 24 | 24 | C.31 | 0.428571 |
ORF1ab/nsp3 | 825 | L825del1 | Ctg | -tg | 22 | 22 | B.1.621 | 0.001947 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 11 | 21 | AY.4.2 | 0.000239 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 10 | 21 | AY.4.2 | 0.000217 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 17 | 21 | AY.46.4 | 0.002797 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 4 | 21 | AY.46.4 | 0.000658 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 15 | 20 | AY.75.1 | 0.002705 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 5 | 20 | AY.75.1 | 0.000902 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 10 | 19 | B.1.427 | 0.000505 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 9 | 19 | B.1.427 | 0.000454 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 15 | 19 | B.1.526 | 0.000353 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 3 | 19 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 1 | 19 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 19 | 19 | P.1.10 | 0.00512 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 16 | 18 | AY.42 | 0.000644 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 1 | 18 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 18 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 18 | 18 | B.1.177.75 | 0.01873 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 15 | 18 | B.1.438.1 | 0.001609 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 1 | 18 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 18 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctC | 1 | 18 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 17 | 17 | B.1.160.14 | 0.036017 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 17 | 17 | B.1.596 | 0.001481 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 15 | 16 | AY.36 | 0.002223 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 16 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 15 | 16 | AY.6 | 0.000617 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 16 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 13 | 16 | AY.88 | 0.011494 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 3 | 16 | AY.88 | 0.002653 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 11 | 16 | P.1.14 | 0.000526 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 5 | 16 | P.1.14 | 0.000239 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 10 | 15 | B.1.258 | 0.000665 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 5 | 15 | B.1.258 | 0.000333 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 10 | 15 | B.1.351 | 0.000297 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 4 | 15 | B.1.351 | 0.000119 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 1 | 15 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 12 | 14 | AY.29 | 0.000189 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 2 | 14 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 13 | 14 | AY.4.5 | 0.001397 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 14 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 8 | 14 | AY.46.6 | 0.000578 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 5 | 14 | AY.46.6 | 0.000361 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 1 | 14 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 7 | 13 | AY.33 | 0.000467 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 5 | 13 | AY.33 | 0.000334 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 1 | 13 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 6 | 13 | AY.46 | 0.000624 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 4 | 13 | AY.46 | 0.000416 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 3 | 13 | AY.46 | 0.000312 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 10 | 13 | B.1.617.1 | 0.00129 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 2 | 13 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 13 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 13 | 13 | C.20 | 1 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctC | 8 | 12 | AY.9 | 0.000541 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 4 | 12 | AY.9 | 0.00027 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 12 | 12 | B.1.416 | 0.015228 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 11 | 12 | B.1.623 | 0.005901 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 12 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 9 | 11 | AY.120.1 | 0.002889 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 11 | AY.120.1 | 0.000642 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 7 | 11 | AY.121 | 0.000947 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 4 | 11 | AY.121 | 0.000541 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 6 | 11 | B.1.1.63 | 0.002315 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 5 | 11 | B.1.1.63 | 0.001929 |
ORF1ab/nsp3 | 825 | L825M | Ctg | Atg | 11 | 11 | B.1.177.46 | 0.010101 |
ORF1ab/nsp3 | 825 | L825M | Ctg | Atg | 10 | 10 | A.2.5 | 0.00499 |
ORF1ab/nsp3 | 825 | L825F | CtG | TtT | 10 | 10 | All | 0.000002 |
ORF1ab/nsp3 | 825 | L825P | cTg | cCg | 6 | 10 | All | 0.000001 |
ORF1ab/nsp3 | 825 | L825P | cTG | cCA | 4 | 10 | All | 0.000001 |
ORF1ab/nsp3 | 825 | L825M | Ctg | Atg | 10 | 10 | AY.4 | 0.000016 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 6 | 10 | B.1.1.28 | 0.001867 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 3 | 10 | B.1.1.28 | 0.000934 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 1 | 10 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 10 | 10 | B.1.1.369 | 0.004462 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 10 | 10 | B.1.441 | 0.096154 |
ORF1ab/nsp3 | 825 | L825Q | cTg | cAg | 10 | 10 | B.1.575 | 0.003034 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 9 | 10 | Q.1 | 0.001137 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 10 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 9 | 9 | B.1.1.153 | 0.009858 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 6 | 8 | AY.5.4 | 0.00166 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 2 | 8 | AY.5.4 | 0.000553 |
ORF1ab/nsp3 | 825 | L825Q | cTg | cAg | 8 | 8 | B.1.2 | 0.00007 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 7 | 8 | B.1.258.17 | 0.000728 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 8 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 6 | 8 | B.1.36 | 0.000875 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 2 | 8 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 7 | 8 | Q.4 | 0.003183 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 8 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 825 | L825M | Ctg | Atg | 7 | 7 | AP.1 | 0.010511 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 7 | 7 | AY.10 | 0.00371 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 3 | 7 | AY.119 | 0.000106 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 3 | 7 | AY.119 | 0.000106 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctC | 1 | 7 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 5 | 7 | AY.39.1 | 0.000198 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 7 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 5 | 7 | B.1.1.294 | 0.006329 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 2 | 7 | B.1.1.294 | 0.002532 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 7 | 7 | B.1.177.28 | 0.051852 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 7 | 7 | B.1.177.32 | 0.009447 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 7 | 7 | B.1.177.5 | 0.008696 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 7 | 7 | B.1.177.51 | 0.031963 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 7 | 7 | B.1.582 | 0.003435 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 5 | 6 | AY.118 | 0.000313 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 6 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 4 | 6 | AY.14 | 0.000352 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 6 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 6 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 5 | 6 | AY.16.1 | 0.00235 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 6 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 5 | 6 | AY.30 | 0.001979 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 1 | 6 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 6 | 6 | AY.45 | 0.00073 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 6 | 6 | AY.46.2 | 0.003812 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 5 | 6 | AY.46.5 | 0.000992 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 6 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 6 | 6 | AY.5.3 | 0.002024 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 6 | 6 | AY.7.1 | 0.000676 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 5 | 6 | AY.74 | 0.000578 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 6 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 6 | 6 | B.1.1.1 | 0.00196 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 6 | 6 | B.1.324 | 0.009631 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 6 | 6 | B.1.377 | 0.027397 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 6 | 6 | B.1.468 | 0.034286 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 4 | 6 | D.2 | 0.0003 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctC | 1 | 6 | D.2 | 0.000075 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 6 | D.2 | 0.000075 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 4 | 6 | P.1.17 | 0.000647 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 6 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 6 | 6 | P.1.2 | 0.006936 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 4 | 6 | P.2 | 0.000747 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 6 | P.2 | 0.000373 |
ORF1ab/nsp3 | 825 | L825M | Ctg | Atg | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 4 | 5 | AY.3.1 | 0.000341 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 5 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 825 | L825M | Ctg | Atg | 5 | 5 | AY.41 | 0.00147 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 4 | 5 | AY.46.1 | 0.004107 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 1 | 5 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 3 | 5 | AY.69 | 0.00056 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 5 | AY.69 | 0.000373 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 3 | 5 | AY.85 | 0.001282 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 5 | AY.85 | 0.000854 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 4 | 5 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 1 | 5 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 3 | 5 | B.1.1.222 | 0.000612 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 2 | 5 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 3 | 5 | B.1.1.25 | 0.001706 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 2 | 5 | B.1.1.25 | 0.001137 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 4 | 5 | B.1.1.434 | 0.001394 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 5 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 5 | 5 | B.1.160.28 | 0.01462 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 5 | 5 | B.1.160.32 | 0.021459 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 5 | 5 | B.1.177.72 | 0.016949 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 5 | 5 | B.1.177.86 | 0.000917 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 5 | 5 | C.14 | 0.021645 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 4 | 4 | A | 0.001548 |
ORF1ab/nsp3 | 825 | L825R | cTg | cGg | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 4 | 4 | AY.109 | 0.002959 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 3 | 4 | AY.13 | 0.000483 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 4 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 825 | L825Q | cTg | cAg | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 4 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 2 | 4 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 4 | 4 | B.1.1.249 | 0.285714 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 2 | 4 | B.1.177.8 | 0.001505 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 4 | B.1.177.8 | 0.001505 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 4 | 4 | B.1.369 | 0.001141 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 4 | 4 | B.1.570 | 0.011765 |
ORF1ab/nsp3 | 825 | L825F | CtG | TtT | 4 | 4 | B.1.621.1 | 0.002023 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 4 | 4 | B.6.6 | 0.003556 |
ORF1ab/nsp3 | 825 | L825M | Ctg | Atg | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 4 | Q.8 | 0.00033 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 1 | 4 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 4 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 2 | 3 | A.28 | 0.005291 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 3 | A.28 | 0.002646 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 3 | 3 | AD.2 | 0.000657 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp3 | 825 | L825M | Ctg | Atg | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 3 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 3 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 3 | AY.41 | 0.000588 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 3 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 3 | 3 | AY.60 | 0.002814 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 3 | AY.68 | 0.000547 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 3 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 3 | 3 | AY.77 | 0.003382 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 3 | AY.9.1 | 0.000167 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 3 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 3 | 3 | B | 0.000383 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 3 | 3 | B.1.1.237 | 0.016216 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 3 | 3 | B.1.1.243 | 0.012245 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 3 | 3 | B.1.1.465 | 0.046875 |
ORF1ab/nsp3 | 825 | L825P | cTg | cCg | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 825 | L825P | cTG | cCA | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 3 | 3 | B.1.110.3 | 0.002155 |
ORF1ab/nsp3 | 825 | L825M | Ctg | Atg | 3 | 3 | B.1.177.52 | 0.005272 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 3 | B.1.177.56 | 0.001335 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctC | 1 | 3 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 3 | 3 | B.1.177.77 | 0.002179 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 3 | 3 | B.1.199 | 0.012397 |
ORF1ab/nsp3 | 825 | L825del1 | Ctg | -tg | 2 | 3 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 825 | L825del1 | ctG | ct- | 1 | 3 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 3 | 3 | B.1.237 | 0.014925 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 3 | 3 | B.1.351.2 | 0.000908 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp3 | 825 | L825Q | cTg | cAg | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 825 | L825F | CtG | TtT | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 3 | 3 | C.36.3 | 0.001702 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 3 | P.1.1 | 0.000635 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 3 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 3 | 3 | P.1.9 | 0.014423 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 825 | L825S | CTg | TCg | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 825 | L825P | cTG | cCA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 2 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 1 | 2 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 2 | AE.8 | 0.000978 |
ORF1ab/nsp3 | 825 | L825V | Ctg | Gtg | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 825 | L825S | CTg | TCg | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 825 | L825C | CTG | TGT | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 2 | 2 | AP.1 | 0.003003 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 2 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 2 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 2 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 2 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp3 | 825 | L825M | Ctg | Atg | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 2 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 2 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 825 | L825M | Ctg | Atg | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 2 | AY.66 | 0.002139 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 2 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 2 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 825 | L825M | Ctg | Atg | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 825 | L825Q | cTg | cAg | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 825 | L825del1 | cTG | c-N | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 825 | L825del1 | Ctg | -tg | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 825 | L825M | Ctg | Atg | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 2 | B.1.1.207 | 0.002364 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 2 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 2 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 2 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 1 | 2 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 2 | B.1.1.241 | 0.004141 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 1 | 2 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 2 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 825 | L825C | CTG | TGT | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 2 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 2 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 825 | L825del1 | Ctg | -tg | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 2 | B.1.177.15 | 0.001262 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 825 | L825Q | cTg | cAg | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 2 | B.1.214.1 | 0.04 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 2 | 2 | B.1.243.1 | 0.044444 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 2 | B.1.320 | 0.001245 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 2 | B.1.320 | 0.001245 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 2 | 2 | B.1.405 | 0.024691 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 2 | B.1.408 | 0.00738 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 2 | B.1.471 | 0.005464 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 2 | 2 | B.1.480 | 0.004975 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp3 | 825 | L825Q | cTg | cAg | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 2 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 2 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 825 | L825M | Ctg | Atg | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 2 | B.1.588 | 0.00182 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 825 | L825del1 | Ctg | -tg | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 2 | 2 | B.1.9.5 | 0.011364 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 2 | C.1.2 | 0.008511 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 2 | 2 | C.16 | 0.002121 |
ORF1ab/nsp3 | 825 | L825R | cTg | cGg | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | AM.4 | 0.003571 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 825 | L825F | CtG | TtT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp3 | 825 | L825P | cTg | cCg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 825 | L825Q | cTg | cAg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 825 | L825Q | cTg | cAg | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 825 | L825del1 | ctG | ct- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 825 | L825del1 | ctG | ct- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 825 | L825M | Ctg | Atg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 825 | L825R | cTg | cGg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 825 | L825P | cTG | cCA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 825 | L825Q | cTg | cAg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 825 | L825del1 | ctG | ct- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 825 | L825P | cTg | cCg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 825 | L825M | Ctg | Atg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 825 | L825F | CtG | TtT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 825 | L825M | Ctg | Atg | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 825 | L825del1 | Ctg | -tg | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 825 | L825del1 | Ctg | -tg | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 825 | L825Q | cTg | cAg | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp3 | 825 | L825M | Ctg | Atg | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctA | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp3 | 825 | L825M | Ctg | Atg | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp3 | 825 | L825V | Ctg | Gtg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctC | 1 | 1 | B.1.1.134 | 0.011364 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.1.205 | 0.003717 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.1.275 | 0.011236 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.1.283 | 0.023256 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 825 | L825P | cTg | cCg | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.1.349 | 0.010309 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 1 | 1 | B.1.1.366 | 0.015873 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.1.391 | 0.008547 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp3 | 825 | L825M | Ctg | Atg | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.1.462 | 0.008621 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp3 | 825 | L825F | CtG | TtT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 825 | L825R | cTg | cGg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.143 | 0.021277 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 825 | L825P | cTg | cCg | 1 | 1 | B.1.160.25 | 0.011111 |
ORF1ab/nsp3 | 825 | L825M | Ctg | Atg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 825 | L825del1 | Ctg | -tg | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.315 | 0.006061 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp3 | 825 | L825V | Ctg | Gtg | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 825 | L825M | Ctg | Atg | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctC | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 825 | L825M | Ctg | Atg | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 825 | L825M | Ctg | Atg | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.451 | 0.008197 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.452 | 0.013699 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.516 | 0.001957 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.541 | 0.004425 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.543 | 0.01 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.589 | 0.007576 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.591 | 0.010638 |
ORF1ab/nsp3 | 825 | L825Q | cTg | cAg | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 825 | L825M | Ctg | Atg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | B.52 | 0.010101 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | C.1.1 | 0.076923 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 825 | L825del | CTG | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 825 | L825L | ctG | ctT | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp3 | 825 | L825L | Ctg | Ttg | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 825 | L825del1 | ctG | ct- | 1 | 1 | Q.4 | 0.000455 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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