CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 822 | P822L | P1640L | nonsyn | cCt | cTt | 321549 | 321544 | 0.999984 | 5183-5185 |
ORF1ab/nsp3 | 822 | P822L | P1640L | nonsyn | cCT | cTA | 321549 | 3 | 0.00000932984 | 5183-5185 |
ORF1ab/nsp3 | 822 | P822L | P1640L | nonsyn | cCT | cTC | 321549 | 2 | 0.00000621989 | 5183-5185 |
ORF1ab/nsp3 | 822 | P822S | P1640S | nonsyn | Cct | Tct | 10716 | 10716 | 1 | 5183-5185 |
ORF1ab/nsp3 | 822 | P822H | P1640H | nonsyn | cCt | cAt | 1456 | 1456 | 1 | 5183-5185 |
ORF1ab/nsp3 | 822 | P822F | P1640F | nonsyn | CCt | TTt | 219 | 219 | 1 | 5183-5185 |
ORF1ab/nsp3 | 822 | P822P | P1640P | syn | ccT | ccC | 75 | 56 | 0.746667 | 5183-5185 |
ORF1ab/nsp3 | 822 | P822P | P1640P | syn | ccT | ccA | 75 | 15 | 0.2 | 5183-5185 |
ORF1ab/nsp3 | 822 | P822P | P1640P | syn | ccT | ccG | 75 | 4 | 0.0533333 | 5183-5185 |
ORF1ab/nsp3 | 822 | P822del | P1640del | del | CCT | --- | 67 | 67 | 1 | 5183-5185 |
ORF1ab/nsp3 | 822 | P822T | P1640T | nonsyn | Cct | Act | 57 | 56 | 0.982456 | 5183-5185 |
ORF1ab/nsp3 | 822 | P822T | P1640T | nonsyn | CcT | AcA | 57 | 1 | 0.0175439 | 5183-5185 |
ORF1ab/nsp3 | 822 | P822I | P1640I | nonsyn | CCt | ATt | 31 | 31 | 1 | 5183-5185 |
ORF1ab/nsp3 | 822 | P822R | P1640R | nonsyn | cCt | cGt | 23 | 20 | 0.869565 | 5183-5185 |
ORF1ab/nsp3 | 822 | P822R | P1640R | nonsyn | cCT | cGA | 23 | 2 | 0.0869565 | 5183-5185 |
ORF1ab/nsp3 | 822 | P822R | P1640R | nonsyn | CCT | AGA | 23 | 1 | 0.0434783 | 5183-5185 |
ORF1ab/nsp3 | 822 | P822del1 | P1640del1 | del | Cct | -ct | 12 | 9 | 0.75 | 5183-5185 |
ORF1ab/nsp3 | 822 | P822del1 | P1640del1 | del | CCT | -TG | 12 | 1 | 0.0833333 | 5183-5185 |
ORF1ab/nsp3 | 822 | P822del1 | P1640del1 | del | ccT | cc- | 12 | 1 | 0.0833333 | 5183-5185 |
ORF1ab/nsp3 | 822 | P822del1 | P1640del1 | del | cCT | cT- | 12 | 1 | 0.0833333 | 5183-5185 |
ORF1ab/nsp3 | 822 | P822N | P1640N | nonsyn | CCt | AAt | 6 | 6 | 1 | 5183-5185 |
ORF1ab/nsp3 | 822 | P822A | P1640A | nonsyn | Cct | Gct | 3 | 3 | 1 | 5183-5185 |
ORF1ab/nsp3 | 822 | P822V | P1640V | nonsyn | CCt | GTt | 1 | 1 | 1 | 5183-5185 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 321544 | 321549 | All | 0.061499 |
ORF1ab/nsp3 | 822 | P822L | cCT | cTA | 3 | 321549 | All | 0.000001 |
ORF1ab/nsp3 | 822 | P822L | cCT | cTC | 2 | 321549 | All | 0 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 39341 | 39341 | B.1.617.2 | 0.148135 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 34589 | 34589 | AY.26 | 0.97922 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 30898 | 30899 | AY.47 | 0.961087 |
ORF1ab/nsp3 | 822 | P822L | cCT | cTA | 1 | 30899 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 23494 | 23494 | AY.9.2 | 0.862925 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 16347 | 16348 | AY.75 | 0.915798 |
ORF1ab/nsp3 | 822 | P822L | cCT | cTC | 1 | 16348 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 15430 | 15430 | AY.27 | 0.998641 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 14722 | 14722 | AY.9 | 0.995133 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 11761 | 11762 | AY.9.1 | 0.984678 |
ORF1ab/nsp3 | 822 | P822L | cCT | cTC | 1 | 11762 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 11165 | 11165 | AY.14 | 0.982662 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 10716 | 10716 | All | 0.00205 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 9923 | 9923 | AY.54 | 0.946129 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 9500 | 9500 | AY.61 | 0.99539 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 8244 | 8244 | AY.74 | 0.953394 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 6009 | 6009 | AY.13 | 0.967321 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 5172 | 5172 | AY.69 | 0.965466 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 5093 | 5093 | AY.75.1 | 0.91832 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 4672 | 4672 | AY.70 | 0.974145 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 4186 | 4186 | AY.35 | 0.97553 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 3220 | 3220 | AY.53 | 0.925819 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2974 | 2974 | AY.37 | 0.939949 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2763 | 2763 | AY.2 | 0.983974 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2503 | 2503 | AY.68 | 0.68519 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2483 | 2483 | B.1.466.2 | 0.97144 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2468 | 2468 | AY.30 | 0.976652 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2449 | 2449 | AY.63 | 0.947389 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2409 | 2409 | B.1.1.7 | 0.002157 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2269 | 2269 | AY.16 | 0.861427 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2256 | 2256 | AY.24 | 0.972414 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2125 | 2125 | AY.16.1 | 0.99859 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2025 | 2025 | AY.48 | 0.94186 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2025 | 2025 | AY.71 | 0.961995 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2013 | 2013 | AY.62 | 0.877124 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1975 | 1975 | AY.67 | 0.916899 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1741 | 1741 | AY.38 | 0.869196 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1719 | 1719 | AY.10 | 0.91097 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1715 | 1715 | AY.65 | 0.914179 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1629 | 1629 | AY.8 | 0.987273 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1590 | 1590 | AY.59 | 0.842161 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1504 | 1504 | AY.64 | 0.895238 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 1456 | 1456 | All | 0.000278 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1414 | 1414 | AY.57 | 0.927822 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1209 | 1209 | AY.50 | 0.966427 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1137 | 1137 | AY.43 | 0.005037 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1087 | 1087 | AY.110 | 0.122493 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1064 | 1064 | B.1 | 0.009746 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1057 | 1057 | AY.51 | 0.960909 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 996 | 996 | AY.60 | 0.934334 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 987 | 987 | AY.4 | 0.001536 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 917 | 917 | AY.66 | 0.980749 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 912 | 912 | AY.40 | 0.87946 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 909 | 909 | AY.44 | 0.005533 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 909 | 909 | AY.73 | 0.60479 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 820 | 820 | AY.52 | 0.667752 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 800 | 800 | AY.58 | 0.725953 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 800 | 800 | B.1.1.170 | 0.997506 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 787 | 787 | AU.1 | 0.996203 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 768 | 768 | AY.103 | 0.004769 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 735 | 735 | B.1.1.7 | 0.000658 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 717 | 717 | AY.72 | 0.97551 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 690 | 690 | AY.11 | 0.923695 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 650 | 650 | B.1.214.2 | 0.389688 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 630 | 630 | B.1.1.519 | 0.025018 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 611 | 611 | AY.43 | 0.002707 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 610 | 610 | AY.55 | 0.559633 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 587 | 587 | AY.19 | 0.669327 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 506 | 506 | AY.28 | 0.956522 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 506 | 506 | AY.9.2.1 | 1 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 469 | 469 | AU.3 | 0.989451 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 468 | 468 | AY.120 | 0.0174 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 463 | 463 | AY.56 | 0.743178 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 448 | 448 | AY.15 | 0.995556 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 437 | 437 | AY.44 | 0.00266 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 407 | 407 | AU.2 | 0.985472 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 397 | 397 | B.1.1.7 | 0.000355 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 381 | 381 | B.1.617.2 | 0.001435 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 323 | 323 | B.1 | 0.002959 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 314 | 314 | B.1.1.286 | 0.910145 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 271 | 271 | AY.49 | 0.865815 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 257 | 257 | AY.25 | 0.001546 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 230 | 230 | AY.39.1 | 0.009111 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 227 | 227 | B.1.459 | 0.926531 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 222 | 222 | AY.103 | 0.001378 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 219 | 219 | All | 0.000042 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 217 | 217 | AY.4 | 0.000338 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 207 | 207 | B.1.177 | 0.002726 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 202 | 202 | AY.46 | 0.021024 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 201 | 201 | AY.42 | 0.008086 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 197 | 197 | AV.1 | 0.994949 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 196 | 196 | B.1.177 | 0.002581 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 191 | 191 | P.1 | 0.003009 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 186 | 186 | AY.3 | 0.00185 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 183 | 183 | AY.3 | 0.00182 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 176 | 176 | AY.25 | 0.001059 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 176 | 176 | AY.98 | 0.013903 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 166 | 166 | AY.20 | 0.006452 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 150 | 150 | AY.23 | 0.010462 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 143 | 143 | B.1.177.26 | 1 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 137 | 137 | B.1.2 | 0.001206 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 133 | 133 | AY.108 | 0.146637 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 121 | 121 | B.1.313 | 0.796053 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 119 | 119 | B.1.617.1 | 0.015347 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 117 | 117 | AY.102 | 0.003102 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 114 | 114 | B.1.427 | 0.005757 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 112 | 112 | AY.34 | 0.01086 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 101 | 101 | B.1.2 | 0.000889 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 100 | 100 | AY.113 | 0.014239 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 99 | 99 | B.1.621.1 | 0.050076 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 98 | 98 | AY.18 | 0.989899 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 92 | 92 | AY.118 | 0.005764 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 92 | 92 | AY.17 | 0.754098 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 92 | 92 | B.1.1 | 0.001669 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 91 | 91 | AY.5 | 0.001879 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 83 | 83 | B | 0.010608 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 82 | 82 | AY.117 | 0.00693 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 82 | 82 | AY.45 | 0.009978 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 81 | 81 | AY.105 | 0.05209 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 78 | 78 | B.1.438.1 | 0.008366 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 76 | 76 | AY.46.2 | 0.048285 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccC | 56 | 75 | All | 0.000011 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccA | 15 | 75 | All | 0.000003 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccG | 4 | 75 | All | 0.000001 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 74 | 74 | AY.34 | 0.007175 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 72 | 72 | AY.23 | 0.005022 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 68 | 68 | AY.39 | 0.00168 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 68 | 68 | B.1.526 | 0.001598 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 67 | 67 | All | 0.000013 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 66 | 66 | AY.100 | 0.003036 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 66 | 66 | AY.92 | 0.01896 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 65 | 65 | AY.118 | 0.004072 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 65 | 65 | AY.47 | 0.002022 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 63 | 63 | AY.98.1 | 0.003051 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 63 | 63 | B.1.1.526 | 0.223404 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 61 | 61 | AY.33 | 0.004073 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 61 | 61 | AY.39 | 0.001507 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 59 | 59 | B.1.221 | 0.004191 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 58 | 58 | B.1.258 | 0.00386 |
ORF1ab/nsp3 | 822 | P822T | Cct | Act | 56 | 57 | All | 0.000011 |
ORF1ab/nsp3 | 822 | P822T | CcT | AcA | 1 | 57 | All | 0 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 54 | 54 | AY.121 | 0.007307 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 54 | 54 | C.1.2 | 0.229787 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 53 | 53 | AY.31 | 0.981481 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 52 | 52 | AY.21 | 0.098672 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 51 | 51 | AY.93 | 0.013927 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 50 | 50 | B.1.160 | 0.001559 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 49 | 49 | B.1.160.16 | 0.045539 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 47 | 47 | B.1.578 | 0.839286 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 46 | 46 | AY.120.2 | 0.059126 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 46 | 46 | B.1.1 | 0.000834 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 45 | 45 | AY.5.4 | 0.012452 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 45 | 45 | AY.77 | 0.050733 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 45 | 45 | B.1.36 | 0.006566 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 42 | 42 | AY.32 | 0.022364 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 42 | 42 | B.1.177.60 | 0.009174 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 40 | 40 | AY.111 | 0.007326 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 40 | 40 | B.1.1.524 | 0.833333 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 40 | 40 | P.1.14 | 0.001912 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 39 | 39 | AY.86 | 0.032365 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 39 | 39 | AY.98.1 | 0.001889 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 38 | 38 | AY.5 | 0.000785 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 38 | 38 | B.1.214 | 0.139194 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 37 | 37 | AY.80 | 0.041761 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 36 | 36 | AY.4.2.1 | 0.005364 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 35 | 35 | B.1.361 | 0.045103 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 34 | 34 | AY.116 | 0.009751 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 34 | 34 | AY.20 | 0.001321 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 34 | 34 | B.1.177.62 | 0.040524 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 33 | 33 | AY.29 | 0.000521 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 33 | 33 | AY.46 | 0.003435 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 33 | 33 | B.1 | 0.000302 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 32 | 32 | B.1.429 | 0.000753 |
ORF1ab/nsp3 | 822 | P822I | CCt | ATt | 31 | 31 | All | 0.000006 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 31 | 31 | AY.119 | 0.001095 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 30 | 30 | N.10 | 0.882353 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 30 | 30 | Q.8 | 0.004947 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 29 | 29 | AY.42 | 0.001167 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 29 | 29 | Q.3 | 0.004206 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 27 | 27 | AY.85 | 0.011534 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 27 | 27 | P.1 | 0.000425 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 26 | 26 | B.1.1.153 | 0.028478 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 25 | 25 | B.1.617.2 | 0.000094 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 24 | 24 | AY.26 | 0.000679 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 24 | 24 | AY.5.3 | 0.008097 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 24 | 24 | B.1.526 | 0.000564 |
ORF1ab/nsp3 | 822 | P822R | cCt | cGt | 20 | 23 | All | 0.000004 |
ORF1ab/nsp3 | 822 | P822R | cCT | cGA | 2 | 23 | All | 0 |
ORF1ab/nsp3 | 822 | P822R | CCT | AGA | 1 | 23 | All | 0 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 23 | 23 | B.1.177.81 | 0.004354 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 23 | 23 | B.1.351 | 0.000684 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 23 | 23 | B.1.429 | 0.000541 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 22 | 22 | AY.102 | 0.000583 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 22 | 22 | AY.75 | 0.001232 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 22 | 22 | AY.91 | 0.01607 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 22 | 22 | B.1.462 | 0.15942 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 21 | 21 | AY.119 | 0.000741 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 21 | 21 | AY.41 | 0.006173 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 21 | 21 | AY.88 | 0.018568 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 21 | 21 | B.1.160 | 0.000655 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 20 | 20 | AY.114 | 0.004622 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 20 | 20 | AY.33 | 0.001336 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 20 | 20 | AY.87 | 0.016653 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 20 | 20 | B.1.427 | 0.00101 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 20 | 20 | B.1.596 | 0.001743 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 19 | 19 | AY.1 | 0.007519 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 19 | 19 | AY.106 | 0.006363 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 19 | 19 | AY.98 | 0.001501 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 19 | 19 | B.1.480 | 0.047264 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 19 | 19 | B.1.617.2 | 0.000072 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 18 | 18 | AY.36 | 0.002668 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 17 | 17 | AY.104 | 0.03373 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 17 | 17 | B.1.243 | 0.001183 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 16 | 16 | AY.110 | 0.001803 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 16 | 16 | AY.91 | 0.011687 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 16 | 16 | B.1.627 | 0.032323 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 15 | 15 | AY.7.1 | 0.001691 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 15 | 15 | AY.78 | 0.023112 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 15 | 15 | B.1.1.369 | 0.006693 |
ORF1ab/nsp3 | 822 | P822T | Cct | Act | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 15 | 15 | B.45 | 0.057471 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 15 | 15 | C.37 | 0.001741 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccC | 14 | 14 | AY.44 | 0.000085 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 14 | 14 | AY.5.3 | 0.004723 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 14 | 14 | B.1.177.86 | 0.002568 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 14 | 14 | B.1.214.2 | 0.008393 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 14 | 14 | B.1.474 | 0.026616 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 14 | 14 | B.1.621 | 0.001239 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 14 | 14 | P.1.12 | 0.006776 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 13 | 13 | AY.118 | 0.000814 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 13 | 13 | AY.14 | 0.001144 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 13 | 13 | AY.33 | 0.000868 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 13 | 13 | B.1.1.28 | 0.004046 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 13 | 13 | B.1.111 | 0.015276 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 13 | 13 | B.1.478 | 0.152941 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 13 | 13 | D.2 | 0.000976 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 13 | 13 | W.2 | 0.062802 |
ORF1ab/nsp3 | 822 | P822del1 | Cct | -ct | 9 | 12 | All | 0.000002 |
ORF1ab/nsp3 | 822 | P822del1 | cCT | cT- | 1 | 12 | All | 0 |
ORF1ab/nsp3 | 822 | P822del1 | CCT | -TG | 1 | 12 | All | 0 |
ORF1ab/nsp3 | 822 | P822del1 | ccT | cc- | 1 | 12 | All | 0 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 12 | 12 | AY.117 | 0.001014 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 12 | 12 | B.1 | 0.00011 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 12 | 12 | B.1.1.33 | 0.005051 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 12 | 12 | B.1.1.526 | 0.042553 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 12 | 12 | B.1.221 | 0.000852 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 12 | 12 | B.1.351 | 0.000357 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 12 | 12 | B.1.36 | 0.001751 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 12 | 12 | B.1.617.1 | 0.001548 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 12 | 12 | P.1.15 | 0.002788 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 11 | 11 | AY.81 | 0.021912 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 11 | 11 | AY.90 | 0.007529 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 11 | 11 | AY.95 | 0.008371 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 11 | 11 | B.1.160.30 | 0.032738 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 11 | 11 | B.1.162 | 0.055276 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 11 | 11 | B.1.210 | 0.023454 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 11 | 11 | B.1.279 | 0.00565 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 11 | 11 | B.1.637 | 0.000804 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 10 | 10 | AY.29 | 0.000158 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 10 | 10 | AY.46.6 | 0.000722 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 10 | 10 | B.1.1.214 | 0.000555 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 10 | 10 | B.1.177.4 | 0.002111 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 9 | 9 | AY.101 | 0.004414 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 9 | 9 | AY.109 | 0.006657 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 9 | 9 | AY.12 | 0.002845 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 9 | 9 | AY.45 | 0.001095 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 9 | 9 | AY.46.1 | 0.00924 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 9 | 9 | AY.6 | 0.00037 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 9 | 9 | AY.61 | 0.000943 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 9 | 9 | AY.70 | 0.001877 |
ORF1ab/nsp3 | 822 | P822T | Cct | Act | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 9 | 9 | B.1.177.73 | 0.005096 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 9 | 9 | B.1.36.29 | 0.004656 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 9 | 9 | B.1.36.31 | 0.015762 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 9 | 9 | B.1.369 | 0.002567 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 9 | 9 | B.1.620 | 0.008515 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 8 | 8 | AY.3.1 | 0.000682 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 8 | 8 | AY.84 | 0.0035 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 8 | 8 | B.1.1.216 | 0.007124 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 8 | 8 | B.1.1.222 | 0.001632 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 8 | 8 | B.1.1.33 | 0.003367 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 8 | 8 | B.1.427 | 0.000404 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 8 | 8 | B.1.576 | 0.007253 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 8 | 8 | C.37 | 0.000929 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 7 | 7 | A | 0.002709 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 7 | 7 | AY.22 | 0.014644 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 7 | 7 | AY.4.2 | 0.000152 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccC | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 7 | 7 | AY.46.6 | 0.000505 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccC | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 7 | 7 | B.1.1.1 | 0.002287 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 7 | 7 | B.1.128 | 0.004447 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 7 | 7 | B.1.160.14 | 0.014831 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 7 | 7 | B.1.177.86 | 0.001284 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 7 | 7 | B.1.214 | 0.025641 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 7 | 7 | B.1.258 | 0.000466 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 7 | 7 | B.1.311 | 0.001922 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 7 | 7 | B.1.351.2 | 0.002118 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 7 | 7 | B.1.595 | 0.001827 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 7 | 7 | B.1.9.4 | 0.042945 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 7 | 7 | C.36.3.1 | 0.019022 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 7 | 7 | P.1.12 | 0.003388 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 7 | 7 | P.1.7 | 0.002235 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 6 | 6 | A.2.5 | 0.002994 |
ORF1ab/nsp3 | 822 | P822N | CCt | AAt | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp3 | 822 | P822T | Cct | Act | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 6 | 6 | AY.36 | 0.000889 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 822 | P822I | CCt | ATt | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 6 | 6 | AY.7.2 | 0.003356 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 6 | 6 | AY.88 | 0.005305 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 6 | 6 | AY.92 | 0.001724 |
ORF1ab/nsp3 | 822 | P822R | cCt | cGt | 6 | 6 | AY.97 | 0.010204 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 6 | 6 | B.1.1.362 | 0.033708 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 6 | 6 | B.1.351.2 | 0.001815 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccC | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 6 | 6 | B.1.621 | 0.000531 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 6 | 6 | D.2 | 0.00045 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 5 | 5 | AY.12 | 0.00158 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 5 | 5 | AY.27 | 0.000324 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 822 | P822I | CCt | ATt | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 5 | 5 | AY.99.2 | 0.000461 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 5 | 5 | B.1.1.216 | 0.004452 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 5 | 5 | B.1.1.39 | 0.002548 |
ORF1ab/nsp3 | 822 | P822I | CCt | ATt | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccC | 3 | 5 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccA | 2 | 5 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 5 | 5 | B.1.177.16 | 0.003322 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 5 | 5 | B.1.177.32 | 0.006748 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 5 | 5 | B.1.239 | 0.006105 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 5 | 5 | B.1.469 | 0.018051 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 5 | 5 | B.1.524 | 0.007032 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 5 | 5 | B.1.582 | 0.002453 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 5 | 5 | P.1.16 | 0.001871 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 4 | 4 | AY.105 | 0.002572 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 4 | 4 | AY.116 | 0.001147 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccA | 3 | 4 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccC | 1 | 4 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 4 | 4 | AY.7 | 0.000784 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 4 | 4 | AY.82 | 0.005427 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 4 | 4 | AY.94 | 0.001771 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 4 | 4 | AY.99.1 | 0.006211 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccG | 4 | 4 | B.1.1.189 | 0.006051 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 4 | 4 | B.1.1.303 | 0.01105 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccA | 4 | 4 | B.1.1.368 | 0.012346 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 4 | 4 | B.1.157 | 0.01194 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 4 | 4 | B.1.177.40 | 0.020619 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 4 | 4 | B.1.177.60 | 0.000874 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 4 | 4 | B.1.177.75 | 0.004162 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 4 | 4 | B.1.258.16 | 0.006547 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 4 | 4 | B.1.36.18 | 0.001681 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 4 | 4 | B.1.36.22 | 0.004831 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 4 | 4 | B.1.404 | 0.005208 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 4 | 4 | B.1.466.2 | 0.001565 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 4 | 4 | B.1.575 | 0.001214 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 4 | 4 | C.16 | 0.004242 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 4 | 4 | P.1.10 | 0.001078 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp3 | 822 | P822L | cCT | cTA | 2 | 3 | 0.111111 | |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 3 | 3 | A | 0.001161 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 3 | 3 | A.2 | 0.001985 |
ORF1ab/nsp3 | 822 | P822A | Cct | Gct | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 3 | 3 | AY.107 | 0.001398 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 3 | 3 | AY.120.1 | 0.000963 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccC | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 3 | 3 | AY.4.3 | 0.002525 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 822 | P822T | Cct | Act | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 3 | 3 | AY.46.5 | 0.000595 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 3 | 3 | AY.65 | 0.001599 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 3 | 3 | AY.73 | 0.001996 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 3 | 3 | AY.76 | 0.014493 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 3 | 3 | AY.79 | 0.003632 |
ORF1ab/nsp3 | 822 | P822I | CCt | ATt | 3 | 3 | AY.8 | 0.001818 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 3 | 3 | AY.93 | 0.000819 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 3 | 3 | AZ.2 | 0.002463 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 3 | 3 | B | 0.000383 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 3 | 3 | B | 0.000383 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 3 | 3 | B.1.1.129 | 0.027523 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 3 | 3 | B.1.1.37 | 0.000579 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 3 | 3 | B.1.1.409 | 0.008499 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 3 | 3 | B.1.1.486 | 0.004732 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 3 | 3 | B.1.1.57 | 0.034483 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 3 | 3 | B.1.160.12 | 0.019231 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 3 | 3 | B.1.177.21 | 0.000229 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 3 | 3 | B.1.177.73 | 0.001699 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 3 | 3 | B.1.214.1 | 0.06 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 3 | 3 | B.1.222 | 0.005076 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 3 | 3 | B.1.362 | 0.004622 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 3 | 3 | B.1.396 | 0.002117 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 3 | 3 | B.1.509 | 0.002597 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 3 | 3 | B.1.523 | 0.007353 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 3 | 3 | B.1.587 | 0.005693 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 3 | 3 | B.1.619 | 0.002613 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 3 | 3 | B.40 | 0.001093 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 3 | 3 | C.36 | 0.002732 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 3 | 3 | P.1.13 | 0.002695 |
ORF1ab/nsp3 | 822 | P822R | cCt | cGt | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 822 | P822R | cCT | cGA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 822 | P822R | cCt | cGt | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 822 | P822I | CCt | ATt | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 822 | P822T | Cct | Act | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp3 | 822 | P822I | CCt | ATt | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | AY.76 | 0.009662 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 822 | P822R | cCt | cGt | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | AY.96 | 0.004149 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccC | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 822 | P822N | CCt | AAt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 822 | P822T | Cct | Act | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccC | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccA | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | B.1.1.121 | 0.004854 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | B.1.1.128 | 0.014184 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | B.1.1.138 | 0.012121 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | B.1.1.203 | 0.033898 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | B.1.1.207 | 0.002364 |
ORF1ab/nsp3 | 822 | P822T | Cct | Act | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | B.1.1.241 | 0.004141 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | B.1.1.304 | 0.005618 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | B.1.1.307 | 0.005063 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | B.1.1.397 | 0.004505 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | B.1.1.521 | 0.010695 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | B.1.110.1 | 0.2 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 822 | P822T | Cct | Act | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 822 | P822T | CcT | AcA | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | B.1.177.20 | 0.003035 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | B.1.177.35 | 0.001382 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | B.1.177.52 | 0.003515 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | B.1.177.58 | 0.002663 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | B.1.351.5 | 0.001199 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | B.1.399 | 0.003868 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | B.1.415.1 | 0.015152 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | B.1.416.1 | 0.003125 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | B.1.425 | 0.005988 |
ORF1ab/nsp3 | 822 | P822I | CCt | ATt | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | B.1.505 | 0.008772 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | B.1.551 | 0.002581 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | B.1.604 | 0.034483 |
ORF1ab/nsp3 | 822 | P822I | CCt | ATt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | B.1.620 | 0.001892 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp3 | 822 | P822R | cCt | cGt | 2 | 2 | B.1.9.5 | 0.011364 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | B.26 | 0.029412 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | B.3 | 0.001661 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | B.6.6 | 0.001778 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | N.9 | 0.011905 |
ORF1ab/nsp3 | 822 | P822T | Cct | Act | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 822 | P822del1 | Cct | -ct | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 822 | P822N | CCt | AAt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 822 | P822T | Cct | Act | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | A.18 | 0.05 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | A.19 | 0.009434 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp3 | 822 | P822V | CCt | GTt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AM.4 | 0.003571 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccC | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccC | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 822 | P822T | Cct | Act | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 822 | P822del1 | Cct | -ct | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 822 | P822I | CCt | ATt | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp3 | 822 | P822A | Cct | Gct | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccC | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 822 | P822T | Cct | Act | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 822 | P822A | Cct | Gct | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccC | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 822 | P822del1 | CCT | -TG | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 822 | P822N | CCt | AAt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 822 | P822R | cCt | cGt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 822 | P822del1 | Cct | -ct | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccA | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 822 | P822del1 | Cct | -ct | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 822 | P822T | Cct | Act | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 822 | P822I | CCt | ATt | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 822 | P822I | CCt | ATt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 822 | P822I | CCt | ATt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 822 | P822V | CCt | GTt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 822 | P822del1 | Cct | -ct | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp3 | 822 | P822T | Cct | Act | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 822 | P822N | CCt | AAt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 822 | P822del1 | Cct | -ct | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 822 | P822R | cCt | cGt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.1.115 | 0.008929 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.1.12 | 0.007463 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.1.137 | 0.0125 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.1.175 | 0.076923 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccC | 1 | 1 | B.1.1.226 | 0.005814 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.1.254 | 0.011236 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.1.29 | 0.010309 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.1.320 | 0.018182 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp3 | 822 | P822R | cCt | cGt | 1 | 1 | B.1.1.366 | 0.015873 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 822 | P822A | Cct | Gct | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccA | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.1.56 | 0.017857 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp3 | 822 | P822R | CCT | AGA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 822 | P822del1 | Cct | -ct | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.160.24 | 0.004425 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccA | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.177.84 | 0.006667 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 822 | P822T | Cct | Act | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccC | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.201 | 0.005682 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.208 | 0.04 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.214.3 | 0.007143 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 822 | P822R | cCt | cGt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccC | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.258.23 | 0.02381 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.264 | 0.012346 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.264.1 | 0.047619 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.289 | 0.00266 |
ORF1ab/nsp3 | 822 | P822T | Cct | Act | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.35 | 0.008475 |
ORF1ab/nsp3 | 822 | P822T | Cct | Act | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccA | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 822 | P822T | Cct | Act | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.36.28 | 0.005747 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 822 | P822T | Cct | Act | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccA | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.400.1 | 0.015152 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.401 | 0.008197 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.402 | 0.009804 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 822 | P822T | Cct | Act | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.442 | 0.035714 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.460 | 0.017857 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.505 | 0.004386 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.520 | 0.021739 |
ORF1ab/nsp3 | 822 | P822P | ccT | ccC | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.545 | 0.014493 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.566 | 0.019231 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.570 | 0.002941 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 1 | 1 | B.1.578 | 0.017857 |
ORF1ab/nsp3 | 822 | P822T | Cct | Act | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.595.1 | 0.005848 |
ORF1ab/nsp3 | 822 | P822F | CCt | TTt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 822 | P822del1 | Cct | -ct | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 822 | P822del1 | ccT | cc- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 822 | P822N | CCt | AAt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 822 | P822T | Cct | Act | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.629 | 0.013333 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.4.1 | 0.018868 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 822 | P822T | Cct | Act | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 822 | P822del1 | cCT | cT- | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 822 | P822R | cCt | cGt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | C.36.1 | 0.004149 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | C.36.2 | 0.034483 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 822 | P822del | CCT | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 822 | P822H | cCt | cAt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | N.1 | 0.016949 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | P.1.10.1 | 0.00813 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | P.5 | 0.013699 |
ORF1ab/nsp3 | 822 | P822S | Cct | Tct | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 822 | P822L | cCt | cTt | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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