CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 821 | D821D | D1639D | syn | gaT | gaC | 1782 | 1782 | 1 | 5180-5182 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1782 | 1782 | All | 0.000341 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 554 | 554 | AY.103 | 0.00344 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 311 | 311 | B.1.1.7 | 0.000278 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 251 | 251 | B.1.149 | 0.859589 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 108 | 108 | B.1.617.2 | 0.000407 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 80 | 80 | B.1 | 0.000733 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 52 | 52 | AY.4 | 0.000081 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 50 | 50 | B.1.258 | 0.003327 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 42 | 42 | AY.120 | 0.001562 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 31 | 31 | AY.119 | 0.001095 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 28 | 28 | B.1.1.37 | 0.0054 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 22 | 22 | B.1.621 | 0.001947 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 17 | 17 | AY.20 | 0.000661 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 15 | 15 | B.1.2 | 0.000132 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 15 | 15 | B.1.554 | 0.066079 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 14 | 14 | AY.23 | 0.000976 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 14 | 14 | AY.44 | 0.000085 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 12 | 12 | P.1 | 0.000189 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 10 | 10 | AY.121 | 0.001353 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 9 | 9 | B.1.1 | 0.000163 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 9 | 9 | B.1.240 | 0.00194 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 5 | 5 | AY.36 | 0.000741 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 5 | 5 | AY.88 | 0.004421 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 5 | 5 | B.1.258.17 | 0.00052 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 3 | 3 | AY.52 | 0.002443 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 3 | 3 | B.1.1.434 | 0.001046 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 3 | 3 | B.1.177.20 | 0.004552 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 3 | 3 | B.1.503 | 0.007463 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 3 | 3 | B.4 | 0.006623 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 2 | 2 | AH.2 | 0.024096 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 2 | 2 | B.1.239 | 0.002442 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 2 | 2 | B.1.39 | 0.007812 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | B.1.293 | 0.0125 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | B.1.570 | 0.002941 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 821 | D821D | gaT | gaC | 1 | 1 | B.1.637 | 0.000073 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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