CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 821

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3821D821ND1639NnonsynGatAat3619361915180-5182
ORF1ab/nsp3821D821DD1639DsyngaTgaC1782178215180-5182
ORF1ab/nsp3821D821delD1639deldelGAT---696915180-5182
ORF1ab/nsp3821D821ED1639EnonsyngaTgaG63340.5396835180-5182
ORF1ab/nsp3821D821ED1639EnonsyngaTgaA63290.4603175180-5182
ORF1ab/nsp3821D821YD1639YnonsynGatTat323215180-5182
ORF1ab/nsp3821D821AD1639AnonsyngAtgCt171715180-5182
ORF1ab/nsp3821D821HD1639HnonsynGatCat111115180-5182
ORF1ab/nsp3821D821VD1639VnonsyngAtgTt7715180-5182
ORF1ab/nsp3821D821GD1639GnonsyngAtgGt4415180-5182
ORF1ab/nsp3821D821SD1639SnonsynGAtAGt2215180-5182
ORF1ab/nsp3821D821del1D1639del1delgaTga-210.55180-5182
ORF1ab/nsp3821D821del1D1639del1delGat-at210.55180-5182
ORF1ab/nsp3821D821KD1639KnonsynGaTAaG1115180-5182

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3821D821NGatAat36193619All0.000692
ORF1ab/nsp3821D821DgaTgaC17821782All0.000341
ORF1ab/nsp3821D821NGatAat16851685C.36.30.955757
ORF1ab/nsp3821D821DgaTgaC554554AY.1030.00344
ORF1ab/nsp3821D821NGatAat513513C.360.467213
ORF1ab/nsp3821D821NGatAat357357AY.30.003551
ORF1ab/nsp3821D821NGatAat315315C.36.3.10.855978
ORF1ab/nsp3821D821DgaTgaC311311B.1.1.70.000278
ORF1ab/nsp3821D821DgaTgaC251251B.1.1490.859589
ORF1ab/nsp3821D821NGatAat108108B.1.3510.00321
ORF1ab/nsp3821D821DgaTgaC108108B.1.617.20.000407
ORF1ab/nsp3821D821NGatAat8282B.1.1600.002557
ORF1ab/nsp3821D821DgaTgaC8080B.10.000733
ORF1ab/nsp3821D821NGatAat7474AY.450.009005
ORF1ab/nsp3821D821delGAT---6969All0.000013
ORF1ab/nsp3821D821EgaTgaG3463All0.000007
ORF1ab/nsp3821D821EgaTgaA2963All0.000006
ORF1ab/nsp3821D821NGatAat6161B.1.1.70.000055
ORF1ab/nsp3821D821DgaTgaC5252AY.40.000081
ORF1ab/nsp3821D821NGatAat5252B.1.10.000943
ORF1ab/nsp3821D821NGatAat5151B.1.6040.87931
ORF1ab/nsp3821D821DgaTgaC5050B.1.2580.003327
ORF1ab/nsp3821D821DgaTgaC4242AY.1200.001562
ORF1ab/nsp3821D821NGatAat4141B.10.000376
ORF1ab/nsp3821D821YGatTat3232All0.000006
ORF1ab/nsp3821D821DgaTgaC3131AY.1190.001095
ORF1ab/nsp3821D821NGatAat3131AY.430.000137
ORF1ab/nsp3821D821NGatAat3030B.1.2580.001996
ORF1ab/nsp3821D821DgaTgaC2828B.1.1.370.0054
ORF1ab/nsp3821D821NGatAat2727AY.1030.000168
ORF1ab/nsp3821D821DgaTgaC2222B.1.6210.001947
ORF1ab/nsp3821D821AgAtgCt1717All0.000003
ORF1ab/nsp3821D821DgaTgaC1717AY.200.000661
ORF1ab/nsp3821D821EgaTgaA1417B.1.5260.000329
ORF1ab/nsp3821D821EgaTgaG317B.1.5260.000071
ORF1ab/nsp3821D821NGatAat1717C.370.001973
ORF1ab/nsp3821D821DgaTgaC1515B.1.20.000132
ORF1ab/nsp3821D821DgaTgaC1515B.1.5540.066079
ORF1ab/nsp3821D821DgaTgaC1414AY.230.000976
ORF1ab/nsp3821D821DgaTgaC1414AY.440.000085
ORF1ab/nsp3821D821delGAT---1414B.1.1.70.000013
ORF1ab/nsp3821D821delGAT---1212B.10.00011
ORF1ab/nsp3821D821DgaTgaC1212P.10.000189
ORF1ab/nsp3821D821HGatCat1111All0.000002
ORF1ab/nsp3821D821YGatTat1111P.1.60.021401
ORF1ab/nsp3821D821DgaTgaC1010AY.1210.001353
ORF1ab/nsp3821D821NGatAat1010B.1.20.000088
ORF1ab/nsp3821D821NGatAat99AY.40.000014
ORF1ab/nsp3821D821DgaTgaC99B.1.10.000163
ORF1ab/nsp3821D821DgaTgaC99B.1.2400.00194
ORF1ab/nsp3821D821EgaTgaG58AY.40.000008
ORF1ab/nsp3821D821EgaTgaA38AY.40.000005
ORF1ab/nsp3821D821VgAtgTt77All0.000001
ORF1ab/nsp3821D821NGatAat77AY.250.000042
ORF1ab/nsp3821D821EgaTgaG47B.1.1.70.000004
ORF1ab/nsp3821D821EgaTgaA37B.1.1.70.000003
ORF1ab/nsp3821D821NGatAat77B.1.1770.000092
ORF1ab/nsp3821D821DgaTgaC66AY.1020.000159
ORF1ab/nsp3821D821DgaTgaC66AY.250.000036
ORF1ab/nsp3821D821DgaTgaC66AY.430.000027
ORF1ab/nsp3821D821YGatTat66B.1.1.70.000005
ORF1ab/nsp3821D821DgaTgaC66B.1.4290.000141
ORF1ab/nsp3821D821NGatAat66C.390.113208
ORF1ab/nsp3821D821NGatAat66R.10.00054
ORF1ab/nsp3821D821EgaTgaG55A.300.714286
ORF1ab/nsp3821D821DgaTgaC55AY.360.000741
ORF1ab/nsp3821D821DgaTgaC55AY.880.004421
ORF1ab/nsp3821D821delGAT---55B.1.10.000091
ORF1ab/nsp3821D821NGatAat55B.1.1.2940.006329
ORF1ab/nsp3821D821DgaTgaC55B.1.1770.000066
ORF1ab/nsp3821D821NGatAat55B.1.177.210.000382
ORF1ab/nsp3821D821NGatAat55B.1.230.030303
ORF1ab/nsp3821D821DgaTgaC55B.1.258.170.00052
ORF1ab/nsp3821D821NGatAat55C.170.277778
ORF1ab/nsp3821D821NGatAat55C.350.00387
ORF1ab/nsp3821D821GgAtgGt44All0.000001
ORF1ab/nsp3821D821DgaTgaC44AY.450.000487
ORF1ab/nsp3821D821AgAtgCt44AY.50.000083
ORF1ab/nsp3821D821NGatAat44B.1.1.3720.002755
ORF1ab/nsp3821D821DgaTgaC44B.1.5260.000094
ORF1ab/nsp3821D821NGatAat44B.1.617.20.000015
ORF1ab/nsp3821D821EgaTgaA44B.1.621.10.002023
ORF1ab/nsp3821D821DgaTgaC44C.370.000464
ORF1ab/nsp3821D821NGatAat44P.1.20.004624
ORF1ab/nsp3821D821NGatAat33AY.290.000047
ORF1ab/nsp3821D821NGatAat33AY.39.10.000119
ORF1ab/nsp3821D821delGAT---33AY.40.000005
ORF1ab/nsp3821D821delGAT---33AY.430.000013
ORF1ab/nsp3821D821DgaTgaC33AY.520.002443
ORF1ab/nsp3821D821DgaTgaC33AY.980.000237
ORF1ab/nsp3821D821NGatAat33B.1.1.10.00098
ORF1ab/nsp3821D821NGatAat33B.1.1.280.000934
ORF1ab/nsp3821D821DgaTgaC33B.1.1.4340.001046
ORF1ab/nsp3821D821NGatAat33B.1.1.4820.069767
ORF1ab/nsp3821D821NGatAat33B.1.1.570.034483
ORF1ab/nsp3821D821HGatCat33B.1.1.70.000003
ORF1ab/nsp3821D821AgAtgCt33B.1.1.70.000003
ORF1ab/nsp3821D821DgaTgaC33B.1.177.200.004552
ORF1ab/nsp3821D821AgAtgCt33B.1.177.820.001432
ORF1ab/nsp3821D821DgaTgaC33B.1.3510.000089
ORF1ab/nsp3821D821DgaTgaC33B.1.5030.007463
ORF1ab/nsp3821D821NGatAat33B.1.5540.013216
ORF1ab/nsp3821D821delGAT---33B.1.617.20.000011
ORF1ab/nsp3821D821EgaTgaG23B.1.617.20.000008
ORF1ab/nsp3821D821EgaTgaA13B.1.617.20.000004
ORF1ab/nsp3821D821DgaTgaC33B.40.006623
ORF1ab/nsp3821D821delGAT---220.111111
ORF1ab/nsp3821D821EgaTgaA220.111111
ORF1ab/nsp3821D821DgaTgaC22AH.20.024096
ORF1ab/nsp3821D821SGAtAGt22All0
ORF1ab/nsp3821D821del1Gat-at12All0
ORF1ab/nsp3821D821del1gaTga-12All0
ORF1ab/nsp3821D821NGatAat22AU.20.004843
ORF1ab/nsp3821D821DgaTgaC22AY.10.000791
ORF1ab/nsp3821D821NGatAat22AY.1170.000169
ORF1ab/nsp3821D821HGatCat22AY.1170.000169
ORF1ab/nsp3821D821DgaTgaC22AY.1180.000125
ORF1ab/nsp3821D821NGatAat22AY.270.000129
ORF1ab/nsp3821D821DgaTgaC22AY.290.000032
ORF1ab/nsp3821D821VgAtgTt22AY.40.000003
ORF1ab/nsp3821D821DgaTgaC22AY.4.50.000215
ORF1ab/nsp3821D821AgAtgCt22AY.420.00008
ORF1ab/nsp3821D821HGatCat22AY.430.000009
ORF1ab/nsp3821D821NGatAat22AY.440.000012
ORF1ab/nsp3821D821EgaTgaG22AY.460.000208
ORF1ab/nsp3821D821DgaTgaC22AY.470.000062
ORF1ab/nsp3821D821DgaTgaC22AY.50.000041
ORF1ab/nsp3821D821NGatAat22AY.550.001835
ORF1ab/nsp3821D821NGatAat22AY.60.000082
ORF1ab/nsp3821D821DgaTgaC22AY.9.20.000073
ORF1ab/nsp3821D821GgAtgGt22B.10.000018
ORF1ab/nsp3821D821EgaTgaG12B.10.000009
ORF1ab/nsp3821D821EgaTgaA12B.10.000009
ORF1ab/nsp3821D821DgaTgaC22B.1.1.2160.001781
ORF1ab/nsp3821D821DgaTgaC22B.1.1.3180.000604
ORF1ab/nsp3821D821NGatAat22B.1.1.3800.019608
ORF1ab/nsp3821D821delGAT---22B.1.1770.000026
ORF1ab/nsp3821D821DgaTgaC22B.1.177.40.000422
ORF1ab/nsp3821D821DgaTgaC22B.1.2340.000264
ORF1ab/nsp3821D821DgaTgaC22B.1.2390.002442
ORF1ab/nsp3821D821delGAT---22B.1.360.000292
ORF1ab/nsp3821D821NGatAat22B.1.36.360.001204
ORF1ab/nsp3821D821DgaTgaC22B.1.390.007812
ORF1ab/nsp3821D821NGatAat22B.1.3960.001411
ORF1ab/nsp3821D821DgaTgaC22B.1.466.20.000782
ORF1ab/nsp3821D821NGatAat22B.1.5260.000047
ORF1ab/nsp3821D821NGatAat22B.1.617.10.000258
ORF1ab/nsp3821D821VgAtgTt22B.1.617.20.000008
ORF1ab/nsp3821D821NGatAat22B.1.810.042553
ORF1ab/nsp3821D821NGatAat22B.4.50.02381
ORF1ab/nsp3821D821NGatAat22P.10.000032
ORF1ab/nsp3821D821NGatAat110.055556
ORF1ab/nsp3821D821GgAtgGt110.055556
ORF1ab/nsp3821D821SGAtAGt110.055556
ORF1ab/nsp3821D821NGatAat11A0.000387
ORF1ab/nsp3821D821delGAT---11A.2.20.001689
ORF1ab/nsp3821D821VgAtgTt11A.2.50.000499
ORF1ab/nsp3821D821AgAtgCt11AE.80.000489
ORF1ab/nsp3821D821delGAT---11AH.30.003802
ORF1ab/nsp3821D821KGaTAaG11All0
ORF1ab/nsp3821D821HGatCat11AY.1000.000046
ORF1ab/nsp3821D821NGatAat11AY.1050.000643
ORF1ab/nsp3821D821NGatAat11AY.1110.000183
ORF1ab/nsp3821D821DgaTgaC11AY.116.10.000311
ORF1ab/nsp3821D821delGAT---11AY.1200.000037
ORF1ab/nsp3821D821DgaTgaC11AY.120.20.001285
ORF1ab/nsp3821D821NGatAat11AY.1210.000135
ORF1ab/nsp3821D821NGatAat11AY.16.10.00047
ORF1ab/nsp3821D821DgaTgaC11AY.20.000356
ORF1ab/nsp3821D821NGatAat11AY.230.00007
ORF1ab/nsp3821D821DgaTgaC11AY.240.000431
ORF1ab/nsp3821D821delGAT---11AY.250.000006
ORF1ab/nsp3821D821YGatTat11AY.250.000006
ORF1ab/nsp3821D821NGatAat11AY.260.000028
ORF1ab/nsp3821D821YGatTat11AY.260.000028
ORF1ab/nsp3821D821DgaTgaC11AY.260.000028
ORF1ab/nsp3821D821YGatTat11AY.30.00001
ORF1ab/nsp3821D821DgaTgaC11AY.30.00001
ORF1ab/nsp3821D821DgaTgaC11AY.3.10.000085
ORF1ab/nsp3821D821NGatAat11AY.340.000097
ORF1ab/nsp3821D821EgaTgaG11AY.34.10.00051
ORF1ab/nsp3821D821EgaTgaG11AY.390.000025
ORF1ab/nsp3821D821DgaTgaC11AY.390.000025
ORF1ab/nsp3821D821YGatTat11AY.40.000002
ORF1ab/nsp3821D821NGatAat11AY.4.20.000022
ORF1ab/nsp3821D821delGAT---11AY.4.50.000107
ORF1ab/nsp3821D821AgAtgCt11AY.440.000006
ORF1ab/nsp3821D821NGatAat11AY.460.000104
ORF1ab/nsp3821D821NGatAat11AY.46.20.000635
ORF1ab/nsp3821D821GgAtgGt11AY.46.40.000165
ORF1ab/nsp3821D821EgaTgaG11AY.50.000021
ORF1ab/nsp3821D821EgaTgaA11AY.550.000917
ORF1ab/nsp3821D821DgaTgaC11AY.60.000041
ORF1ab/nsp3821D821NGatAat11AY.620.000436
ORF1ab/nsp3821D821AgAtgCt11AY.70.000196
ORF1ab/nsp3821D821DgaTgaC11AY.7.10.000113
ORF1ab/nsp3821D821delGAT---11AY.750.000056
ORF1ab/nsp3821D821DgaTgaC11AY.75.10.00018
ORF1ab/nsp3821D821NGatAat11AY.75.10.00018
ORF1ab/nsp3821D821DgaTgaC11AY.90.000068
ORF1ab/nsp3821D821NGatAat11AY.9.20.000037
ORF1ab/nsp3821D821EgaTgaG11AY.930.000273
ORF1ab/nsp3821D821NGatAat11AY.980.000079
ORF1ab/nsp3821D821DgaTgaC11AY.98.10.000048
ORF1ab/nsp3821D821YGatTat11B0.000128
ORF1ab/nsp3821D821NGatAat11B0.000128
ORF1ab/nsp3821D821VgAtgTt11B.10.000009
ORF1ab/nsp3821D821YGatTat11B.10.000009
ORF1ab/nsp3821D821delGAT---11B.1.1.1420.017544
ORF1ab/nsp3821D821del1gaTga-11B.1.1.1610.003534
ORF1ab/nsp3821D821DgaTgaC11B.1.1.1640.005155
ORF1ab/nsp3821D821NGatAat11B.1.1.2190.005
ORF1ab/nsp3821D821DgaTgaC11B.1.1.2220.000204
ORF1ab/nsp3821D821AgAtgCt11B.1.1.2320.001815
ORF1ab/nsp3821D821delGAT---11B.1.1.3150.008475
ORF1ab/nsp3821D821NGatAat11B.1.1.3170.000412
ORF1ab/nsp3821D821AgAtgCt11B.1.1.340.013158
ORF1ab/nsp3821D821EgaTgaG11B.1.1.390.00051
ORF1ab/nsp3821D821NGatAat11B.1.1.4090.002833
ORF1ab/nsp3821D821NGatAat11B.1.1.4340.000349
ORF1ab/nsp3821D821EgaTgaG11B.1.1.500.000679
ORF1ab/nsp3821D821DgaTgaC11B.1.1.510.001718
ORF1ab/nsp3821D821delGAT---11B.1.1.5190.00004
ORF1ab/nsp3821D821delGAT---11B.1.1.5210.005348
ORF1ab/nsp3821D821NGatAat11B.1.1.740.00431
ORF1ab/nsp3821D821DgaTgaC11B.1.1.830.00271
ORF1ab/nsp3821D821VgAtgTt11B.1.1150.021739
ORF1ab/nsp3821D821NGatAat11B.1.1170.0125
ORF1ab/nsp3821D821NGatAat11B.1.1240.007812
ORF1ab/nsp3821D821delGAT---11B.1.1400.018868
ORF1ab/nsp3821D821YGatTat11B.1.1600.000031
ORF1ab/nsp3821D821del1Gat-at11B.1.160.160.000929
ORF1ab/nsp3821D821DgaTgaC11B.1.1700.00431
ORF1ab/nsp3821D821YGatTat11B.1.1770.000013
ORF1ab/nsp3821D821HGatCat11B.1.1770.000013
ORF1ab/nsp3821D821DgaTgaC11B.1.177.100.000878
ORF1ab/nsp3821D821DgaTgaC11B.1.177.210.000076
ORF1ab/nsp3821D821NGatAat11B.1.177.350.000691
ORF1ab/nsp3821D821NGatAat11B.1.177.40.000211
ORF1ab/nsp3821D821YGatTat11B.1.177.440.000519
ORF1ab/nsp3821D821delGAT---11B.1.177.620.001192
ORF1ab/nsp3821D821delGAT---11B.1.177.680.015152
ORF1ab/nsp3821D821HGatCat11B.1.177.70.000165
ORF1ab/nsp3821D821DgaTgaC11B.1.177.70.000165
ORF1ab/nsp3821D821NGatAat11B.1.177.770.000726
ORF1ab/nsp3821D821delGAT---11B.1.177.810.000189
ORF1ab/nsp3821D821EgaTgaG11B.1.177.810.000189
ORF1ab/nsp3821D821EgaTgaG11B.1.20.000009
ORF1ab/nsp3821D821SGAtAGt11B.1.20.000009
ORF1ab/nsp3821D821YGatTat11B.1.20.000009
ORF1ab/nsp3821D821DgaTgaC11B.1.2100.002132
ORF1ab/nsp3821D821NGatAat11B.1.2140.003663
ORF1ab/nsp3821D821NGatAat11B.1.2190.009434
ORF1ab/nsp3821D821NGatAat11B.1.2210.000071
ORF1ab/nsp3821D821YGatTat11B.1.2210.000071
ORF1ab/nsp3821D821EgaTgaG11B.1.2230.002778
ORF1ab/nsp3821D821NGatAat11B.1.2400.000216
ORF1ab/nsp3821D821DgaTgaC11B.1.2410.000812
ORF1ab/nsp3821D821DgaTgaC11B.1.2430.00007
ORF1ab/nsp3821D821YGatTat11B.1.258.170.000104
ORF1ab/nsp3821D821DgaTgaC11B.1.2930.0125
ORF1ab/nsp3821D821NGatAat11B.1.3110.000275
ORF1ab/nsp3821D821delGAT---11B.1.3190.003049
ORF1ab/nsp3821D821YGatTat11B.1.3510.00003
ORF1ab/nsp3821D821NGatAat11B.1.360.000146
ORF1ab/nsp3821D821DgaTgaC11B.1.360.000146
ORF1ab/nsp3821D821DgaTgaC11B.1.36.80.001
ORF1ab/nsp3821D821NGatAat11B.1.3620.001541
ORF1ab/nsp3821D821NGatAat11B.1.3750.00082
ORF1ab/nsp3821D821delGAT---11B.1.4150.014286
ORF1ab/nsp3821D821delGAT---11B.1.416.10.001563
ORF1ab/nsp3821D821DgaTgaC11B.1.4270.00005
ORF1ab/nsp3821D821NGatAat11B.1.4270.00005
ORF1ab/nsp3821D821YGatTat11B.1.4290.000024
ORF1ab/nsp3821D821NGatAat11B.1.4290.000024
ORF1ab/nsp3821D821DgaTgaC11B.1.5700.002941
ORF1ab/nsp3821D821EgaTgaG11B.1.5750.000303
ORF1ab/nsp3821D821delGAT---11B.1.5760.000907
ORF1ab/nsp3821D821DgaTgaC11B.1.6090.000479
ORF1ab/nsp3821D821delGAT---11B.1.617.10.000129
ORF1ab/nsp3821D821YGatTat11B.1.617.20.000004
ORF1ab/nsp3821D821HGatCat11B.1.617.20.000004
ORF1ab/nsp3821D821NGatAat11B.1.6200.000946
ORF1ab/nsp3821D821NGatAat11B.1.6210.000089
ORF1ab/nsp3821D821delGAT---11B.1.6210.000089
ORF1ab/nsp3821D821delGAT---11B.1.6300.005236
ORF1ab/nsp3821D821DgaTgaC11B.1.6370.000073
ORF1ab/nsp3821D821NGatAat11B.1.690.035714
ORF1ab/nsp3821D821NGatAat11B.110.005128
ORF1ab/nsp3821D821delGAT---11B.150.017544
ORF1ab/nsp3821D821EgaTgaG11B.4.50.011905
ORF1ab/nsp3821D821KGaTAaG11B.4.50.011905
ORF1ab/nsp3821D821NGatAat11B.520.010101
ORF1ab/nsp3821D821NGatAat11C.160.00106
ORF1ab/nsp3821D821delGAT---11C.370.000116
ORF1ab/nsp3821D821EgaTgaG11P.10.000016
ORF1ab/nsp3821D821NGatAat11P.1.70.000319