CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 820 | T820I | T1638I | nonsyn | aCt | aTt | 2495 | 2495 | 1 | 5177-5179 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2495 | 2495 | All | 0.000477 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 955 | 955 | B.1.1.420 | 0.960765 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 237 | 237 | AY.3 | 0.002357 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 198 | 198 | B.1.1.7 | 0.000177 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 114 | 114 | B.1 | 0.001044 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 101 | 101 | B.1.1 | 0.001832 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 92 | 92 | B.1.2 | 0.00081 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 71 | 71 | B.1.629 | 0.946667 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 70 | 70 | AY.4 | 0.000109 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 50 | 50 | AY.4.2 | 0.001084 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 47 | 47 | B.1.617.2 | 0.000177 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 44 | 44 | B.1.177 | 0.000579 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 41 | 41 | B.1.616 | 1 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 24 | 24 | B.1.1.515 | 0.48 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 22 | 22 | B.1.149 | 0.075342 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 20 | 20 | B.1.160 | 0.000624 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 17 | 17 | B.1.633 | 0.708333 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 15 | 15 | AY.103 | 0.000093 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 13 | 13 | AY.14 | 0.001144 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 12 | 12 | A | 0.004644 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 11 | 11 | AY.25 | 0.000066 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 10 | 10 | AY.44 | 0.000061 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 10 | 10 | B.1.258.17 | 0.00104 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 8 | 8 | B.1.221 | 0.000568 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 8 | 8 | B.1.258 | 0.000532 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 8 | 8 | P.1 | 0.000126 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 7 | 7 | AY.39.1 | 0.000277 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 7 | 7 | AY.45 | 0.000852 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 7 | 7 | B | 0.000895 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 7 | 7 | B.1.243 | 0.000487 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 5 | 5 | B.1.1.232 | 0.009074 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 5 | 5 | B.1.36.29 | 0.002587 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 5 | 5 | B.4.5 | 0.059524 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 4 | 4 | AE.8 | 0.001956 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 4 | 4 | AY.114 | 0.000924 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 4 | 4 | B.1.470 | 0.005618 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 4 | 4 | B.1.619 | 0.003484 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 4 | 4 | B.1.621.1 | 0.002023 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 4 | 4 | B.1.93 | 0.003735 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 3 | 3 | A.2 | 0.001985 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 3 | 3 | AH.3 | 0.011407 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 3 | 3 | B.1.1.434 | 0.001046 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 3 | 3 | B.1.177.43 | 0.004431 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 3 | 3 | B.1.177.80 | 0.005736 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | AA.1 | 0.014493 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | AT.1 | 0.010256 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | B.1.1.369 | 0.000892 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | B.1.1.83 | 0.00542 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | B.1.177.33 | 0.003289 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | B.1.177.42 | 0.001789 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | B.1.177.67 | 0.015267 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | B.1.220 | 0.021739 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | B.1.314 | 0.015038 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | B.1.39 | 0.007812 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | B.1.409 | 0.001563 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | P.3 | 0.00319 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 2 | 2 | V.1 | 0.045455 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | A.25 | 0.018182 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.1.200 | 0.007463 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.1.254 | 0.011236 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.1.436 | 0.025641 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.1.56 | 0.017857 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.160.33 | 0.004425 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.219 | 0.009434 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.242 | 0.018868 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.315 | 0.006061 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.420 | 0.010417 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.434 | 0.052632 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 820 | T820I | aCt | aTt | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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