CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 817

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3817Y817YY1635YsyntaCtaT103841038415168-5170
ORF1ab/nsp3817Y817delY1635deldelTAC---545415168-5170
ORF1ab/nsp3817Y817HY1635HnonsynTacCac373715168-5170
ORF1ab/nsp3817Y817del1Y1635del1deltaCta-14100.7142865168-5170
ORF1ab/nsp3817Y817del1Y1635del1delTac-ac1420.1428575168-5170
ORF1ab/nsp3817Y817del1Y1635del1delTaC-aA1420.1428575168-5170
ORF1ab/nsp3817Y817del2Y1635del2deltACt--101015168-5170
ORF1ab/nsp3817Y817FY1635FnonsyntActTc980.8888895168-5170
ORF1ab/nsp3817Y817FY1635FnonsyntACtTT910.1111115168-5170
ORF1ab/nsp3817Y817XY1635XnonsyntaCtaA750.7142865168-5170
ORF1ab/nsp3817Y817XY1635XnonsyntaCtaG720.2857145168-5170
ORF1ab/nsp3817Y817NY1635NnonsynTacAac6615168-5170
ORF1ab/nsp3817Y817DY1635DnonsynTacGac4415168-5170
ORF1ab/nsp3817Y817SY1635SnonsyntActCc1115168-5170
ORF1ab/nsp3817Y817CY1635CnonsyntActGc1115168-5170
ORF1ab/nsp3817Y817PY1635PnonsynTACCCA1115168-5170
ORF1ab/nsp3817Y817LY1635LnonsynTAcCTc1115168-5170

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3817Y817YtaCtaT1038410384All0.001986
ORF1ab/nsp3817Y817YtaCtaT66366636B.1.1770.08738
ORF1ab/nsp3817Y817YtaCtaT15151515B.1.177.150.955836
ORF1ab/nsp3817Y817YtaCtaT410410B.1.1.70.000367
ORF1ab/nsp3817Y817YtaCtaT164164B.1.177.141
ORF1ab/nsp3817Y817YtaCtaT135135AA.10.978261
ORF1ab/nsp3817Y817YtaCtaT129129AA.20.992308
ORF1ab/nsp3817Y817YtaCtaT110110AA.41
ORF1ab/nsp3817Y817YtaCtaT9999B.1.177.780.961165
ORF1ab/nsp3817Y817YtaCtaT8181B.1.5960.007058
ORF1ab/nsp3817Y817YtaCtaT7272AA.70.66055
ORF1ab/nsp3817Y817YtaCtaT7171AY.46.60.005127
ORF1ab/nsp3817Y817YtaCtaT6262AA.51
ORF1ab/nsp3817Y817YtaCtaT6262AA.61
ORF1ab/nsp3817Y817delTAC---5454All0.00001
ORF1ab/nsp3817Y817YtaCtaT5454AY.40.000084
ORF1ab/nsp3817Y817YtaCtaT5050B.10.000458
ORF1ab/nsp3817Y817YtaCtaT5050B.1.617.20.000188
ORF1ab/nsp3817Y817YtaCtaT4545AA.81
ORF1ab/nsp3817Y817YtaCtaT4242B.1.4290.000988
ORF1ab/nsp3817Y817YtaCtaT3737AA.31
ORF1ab/nsp3817Y817HTacCac3737All0.000007
ORF1ab/nsp3817Y817YtaCtaT3636B.1.160.300.107143
ORF1ab/nsp3817Y817YtaCtaT3030AY.330.002003
ORF1ab/nsp3817Y817YtaCtaT2525AY.30.000249
ORF1ab/nsp3817Y817YtaCtaT2424AY.250.000144
ORF1ab/nsp3817Y817YtaCtaT2121AY.430.000093
ORF1ab/nsp3817Y817YtaCtaT2020AY.4.2.10.00298
ORF1ab/nsp3817Y817YtaCtaT1717B.1.177.820.008115
ORF1ab/nsp3817Y817YtaCtaT1616A.10.00451
ORF1ab/nsp3817Y817YtaCtaT1515B.1.10.000272
ORF1ab/nsp3817Y817YtaCtaT1515B.1.20.000132
ORF1ab/nsp3817Y817YtaCtaT1515B.1.3110.004119
ORF1ab/nsp3817Y817del1taCta-1014All0.000002
ORF1ab/nsp3817Y817del1Tac-ac214All0
ORF1ab/nsp3817Y817del1TaC-aA214All0
ORF1ab/nsp3817Y817YtaCtaT1414B.1.1600.000437
ORF1ab/nsp3817Y817YtaCtaT1313AY.1200.000483
ORF1ab/nsp3817Y817YtaCtaT1313AY.390.000321
ORF1ab/nsp3817Y817YtaCtaT1212AY.260.00034
ORF1ab/nsp3817Y817delTAC---1212B.1.1.70.000011
ORF1ab/nsp3817Y817YtaCtaT1111B.1.2580.000732
ORF1ab/nsp3817Y817YtaCtaT1111P.10.000173
ORF1ab/nsp3817Y817del2tACt--1010All0.000002
ORF1ab/nsp3817Y817YtaCtaT1010B.1.36.290.005173
ORF1ab/nsp3817Y817FtActTc89All0.000002
ORF1ab/nsp3817Y817FtACtTT19All0
ORF1ab/nsp3817Y817YtaCtaT99AY.1030.000056
ORF1ab/nsp3817Y817YtaCtaT99AY.1190.000318
ORF1ab/nsp3817Y817YtaCtaT99B.1.2210.000639
ORF1ab/nsp3817Y817YtaCtaT99B.1.438.10.000965
ORF1ab/nsp3817Y817XtaCtaA57All0.000001
ORF1ab/nsp3817Y817XtaCtaG27All0
ORF1ab/nsp3817Y817YtaCtaT77AY.1180.000439
ORF1ab/nsp3817Y817HTacCac77AY.40.000011
ORF1ab/nsp3817Y817YtaCtaT77AY.470.000218
ORF1ab/nsp3817Y817delTAC---77B.10.000064
ORF1ab/nsp3817Y817YtaCtaT77B.1.177.690.010386
ORF1ab/nsp3817Y817YtaCtaT77B.1.617.10.000903
ORF1ab/nsp3817Y817YtaCtaT77B.390.016317
ORF1ab/nsp3817Y817YtaCtaT77D.20.000525
ORF1ab/nsp3817Y817NTacAac66All0.000001
ORF1ab/nsp3817Y817YtaCtaT66AY.1060.002009
ORF1ab/nsp3817Y817YtaCtaT66B0.000767
ORF1ab/nsp3817Y817YtaCtaT66B.1.177.620.007151
ORF1ab/nsp3817Y817YtaCtaT55AY.1020.000133
ORF1ab/nsp3817Y817HTacCac55AY.250.00003
ORF1ab/nsp3817Y817YtaCtaT55AY.680.001369
ORF1ab/nsp3817Y817del1taCta-45B.1.1.70.000004
ORF1ab/nsp3817Y817del1Tac-ac15B.1.1.70.000001
ORF1ab/nsp3817Y817YtaCtaT55B.1.177.440.002595
ORF1ab/nsp3817Y817DTacGac44All0.000001
ORF1ab/nsp3817Y817YtaCtaT44AY.1130.00057
ORF1ab/nsp3817Y817YtaCtaT44AY.4.20.000087
ORF1ab/nsp3817Y817HTacCac44AY.430.000018
ORF1ab/nsp3817Y817YtaCtaT44AY.50.000083
ORF1ab/nsp3817Y817del2tACt--44B.10.000037
ORF1ab/nsp3817Y817XtaCtaA34B.10.000027
ORF1ab/nsp3817Y817XtaCtaG14B.10.000009
ORF1ab/nsp3817Y817del2tACt--44B.1.10.000073
ORF1ab/nsp3817Y817HTacCac44B.1.20.000035
ORF1ab/nsp3817Y817YtaCtaT44B.1.3510.000119
ORF1ab/nsp3817Y817YtaCtaT44C.370.000464
ORF1ab/nsp3817Y817delTAC---33AY.430.000013
ORF1ab/nsp3817Y817YtaCtaT33AY.460.000312
ORF1ab/nsp3817Y817YtaCtaT33AY.700.000626
ORF1ab/nsp3817Y817YtaCtaT33B.1.1.1530.003286
ORF1ab/nsp3817Y817YtaCtaT33B.1.177.310.034483
ORF1ab/nsp3817Y817YtaCtaT33B.1.177.570.000843
ORF1ab/nsp3817Y817YtaCtaT33B.1.2010.017045
ORF1ab/nsp3817Y817YtaCtaT33B.1.258.170.000312
ORF1ab/nsp3817Y817YtaCtaT33B.1.6090.001438
ORF1ab/nsp3817Y817delTAC---33B.1.617.20.000011
ORF1ab/nsp3817Y817YtaCtaT33B.1.6210.000266
ORF1ab/nsp3817Y817YtaCtaT33P.1.140.000143
ORF1ab/nsp3817Y817delTAC---220.111111
ORF1ab/nsp3817Y817del1TaC-aA220.111111
ORF1ab/nsp3817Y817HTacCac22AY.1030.000012
ORF1ab/nsp3817Y817YtaCtaT22AY.1090.001479
ORF1ab/nsp3817Y817YtaCtaT22AY.200.000078
ORF1ab/nsp3817Y817YtaCtaT22AY.230.000139
ORF1ab/nsp3817Y817YtaCtaT22AY.34.10.00102
ORF1ab/nsp3817Y817delTAC---22AY.40.000003
ORF1ab/nsp3817Y817YtaCtaT22AY.46.30.001867
ORF1ab/nsp3817Y817YtaCtaT22AY.690.000373
ORF1ab/nsp3817Y817FtActTc12AY.98.10.000048
ORF1ab/nsp3817Y817FtACtTT12AY.98.10.000048
ORF1ab/nsp3817Y817FtActTc22B.10.000018
ORF1ab/nsp3817Y817YtaCtaT22B.1.1.3060.000877
ORF1ab/nsp3817Y817delTAC---22B.1.1770.000026
ORF1ab/nsp3817Y817YtaCtaT22B.1.177.40.000422
ORF1ab/nsp3817Y817YtaCtaT22B.1.177.400.010309
ORF1ab/nsp3817Y817YtaCtaT22B.1.177.540.001213
ORF1ab/nsp3817Y817HTacCac22B.1.177.600.000437
ORF1ab/nsp3817Y817YtaCtaT22B.1.177.650.001331
ORF1ab/nsp3817Y817YtaCtaT22B.1.2360.004107
ORF1ab/nsp3817Y817YtaCtaT22B.1.2400.000431
ORF1ab/nsp3817Y817delTAC---22B.1.360.000292
ORF1ab/nsp3817Y817FtActTc22B.1.4270.000101
ORF1ab/nsp3817Y817YtaCtaT22B.1.4930.051282
ORF1ab/nsp3817Y817del1taCta-22B.1.6270.00404
ORF1ab/nsp3817Y817HTacCac22P.10.000032
ORF1ab/nsp3817Y817YtaCtaT22P.1.170.000324
ORF1ab/nsp3817Y817XtaCtaA110.055556
ORF1ab/nsp3817Y817delTAC---11A.2.20.001689
ORF1ab/nsp3817Y817NTacAac11A.2.40.003367
ORF1ab/nsp3817Y817YtaCtaT11AD.20.000219
ORF1ab/nsp3817Y817delTAC---11AH.30.003802
ORF1ab/nsp3817Y817CtActGc11All0
ORF1ab/nsp3817Y817StActCc11All0
ORF1ab/nsp3817Y817PTACCCA11All0
ORF1ab/nsp3817Y817LTAcCTc11All0
ORF1ab/nsp3817Y817YtaCtaT11AY.1000.000046
ORF1ab/nsp3817Y817del1taCta-11AY.1190.000035
ORF1ab/nsp3817Y817HTacCac11AY.1200.000037
ORF1ab/nsp3817Y817YtaCtaT11AY.1210.000135
ORF1ab/nsp3817Y817NTacAac11AY.230.00007
ORF1ab/nsp3817Y817delTAC---11AY.250.000006
ORF1ab/nsp3817Y817YtaCtaT11AY.270.000065
ORF1ab/nsp3817Y817YtaCtaT11AY.290.000016
ORF1ab/nsp3817Y817YtaCtaT11AY.320.000532
ORF1ab/nsp3817Y817YtaCtaT11AY.370.000316
ORF1ab/nsp3817Y817delTAC---11AY.4.50.000107
ORF1ab/nsp3817Y817YtaCtaT11AY.420.00004
ORF1ab/nsp3817Y817NTacAac11AY.420.00004
ORF1ab/nsp3817Y817DTacGac11AY.430.000004
ORF1ab/nsp3817Y817FtActTc11AY.430.000004
ORF1ab/nsp3817Y817NTacAac11AY.430.000004
ORF1ab/nsp3817Y817YtaCtaT11AY.440.000006
ORF1ab/nsp3817Y817HTacCac11AY.440.000006
ORF1ab/nsp3817Y817YtaCtaT11AY.450.000122
ORF1ab/nsp3817Y817YtaCtaT11AY.46.40.000165
ORF1ab/nsp3817Y817YtaCtaT11AY.620.000436
ORF1ab/nsp3817Y817YtaCtaT11AY.710.000475
ORF1ab/nsp3817Y817delTAC---11AY.750.000056
ORF1ab/nsp3817Y817YtaCtaT11AY.750.000056
ORF1ab/nsp3817Y817YtaCtaT11AY.75.10.00018
ORF1ab/nsp3817Y817YtaCtaT11AY.900.000684
ORF1ab/nsp3817Y817YtaCtaT11AY.930.000273
ORF1ab/nsp3817Y817YtaCtaT11AY.960.002075
ORF1ab/nsp3817Y817YtaCtaT11AY.980.000079
ORF1ab/nsp3817Y817YtaCtaT11AY.98.10.000048
ORF1ab/nsp3817Y817HTacCac11B.10.000009
ORF1ab/nsp3817Y817NTacAac11B.10.000009
ORF1ab/nsp3817Y817del1taCta-11B.10.000009
ORF1ab/nsp3817Y817delTAC---11B.1.10.000018
ORF1ab/nsp3817Y817delTAC---11B.1.1.1420.017544
ORF1ab/nsp3817Y817YtaCtaT11B.1.1.2160.00089
ORF1ab/nsp3817Y817YtaCtaT11B.1.1.2220.000204
ORF1ab/nsp3817Y817YtaCtaT11B.1.1.3150.008475
ORF1ab/nsp3817Y817delTAC---11B.1.1.3150.008475
ORF1ab/nsp3817Y817delTAC---11B.1.1.390.00051
ORF1ab/nsp3817Y817YtaCtaT11B.1.1.3980.003226
ORF1ab/nsp3817Y817YtaCtaT11B.1.1.4090.002833
ORF1ab/nsp3817Y817YtaCtaT11B.1.1.4110.014706
ORF1ab/nsp3817Y817FtActTc11B.1.1.4110.014706
ORF1ab/nsp3817Y817YtaCtaT11B.1.1.4860.001577
ORF1ab/nsp3817Y817YtaCtaT11B.1.1.5190.00004
ORF1ab/nsp3817Y817delTAC---11B.1.1.5190.00004
ORF1ab/nsp3817Y817del2tACt--11B.1.1.5210.005348
ORF1ab/nsp3817Y817HTacCac11B.1.1.70.000001
ORF1ab/nsp3817Y817del2tACt--11B.1.1.70.000001
ORF1ab/nsp3817Y817FtActTc11B.1.1.70.000001
ORF1ab/nsp3817Y817DTacGac11B.1.1.70.000001
ORF1ab/nsp3817Y817CtActGc11B.1.1.710.006061
ORF1ab/nsp3817Y817delTAC---11B.1.1400.018868
ORF1ab/nsp3817Y817HTacCac11B.1.1570.002985
ORF1ab/nsp3817Y817YtaCtaT11B.1.160.200.008929
ORF1ab/nsp3817Y817HTacCac11B.1.177.120.000152
ORF1ab/nsp3817Y817YtaCtaT11B.1.177.180.00116
ORF1ab/nsp3817Y817YtaCtaT11B.1.177.210.000076
ORF1ab/nsp3817Y817YtaCtaT11B.1.177.230.003236
ORF1ab/nsp3817Y817YtaCtaT11B.1.177.350.000691
ORF1ab/nsp3817Y817delTAC---11B.1.177.620.001192
ORF1ab/nsp3817Y817delTAC---11B.1.177.680.015152
ORF1ab/nsp3817Y817HTacCac11B.1.177.730.000566
ORF1ab/nsp3817Y817YtaCtaT11B.1.177.770.000726
ORF1ab/nsp3817Y817HTacCac11B.1.177.800.001912
ORF1ab/nsp3817Y817HTacCac11B.1.177.810.000189
ORF1ab/nsp3817Y817YtaCtaT11B.1.177.830.001481
ORF1ab/nsp3817Y817YtaCtaT11B.1.177.840.006667
ORF1ab/nsp3817Y817del1Tac-ac11B.1.20.000009
ORF1ab/nsp3817Y817del1taCta-11B.1.2100.002132
ORF1ab/nsp3817Y817YtaCtaT11B.1.2410.000812
ORF1ab/nsp3817Y817YtaCtaT11B.1.2430.00007
ORF1ab/nsp3817Y817delTAC---11B.1.3190.003049
ORF1ab/nsp3817Y817YtaCtaT11B.1.36.180.00042
ORF1ab/nsp3817Y817YtaCtaT11B.1.3620.001541
ORF1ab/nsp3817Y817YtaCtaT11B.1.3750.00082
ORF1ab/nsp3817Y817delTAC---11B.1.4150.014286
ORF1ab/nsp3817Y817YtaCtaT11B.1.4160.001269
ORF1ab/nsp3817Y817delTAC---11B.1.416.10.001563
ORF1ab/nsp3817Y817YtaCtaT11B.1.416.10.001563
ORF1ab/nsp3817Y817YtaCtaT11B.1.4200.010417
ORF1ab/nsp3817Y817YtaCtaT11B.1.4270.00005
ORF1ab/nsp3817Y817NTacAac11B.1.4290.000024
ORF1ab/nsp3817Y817DTacGac11B.1.4620.007246
ORF1ab/nsp3817Y817YtaCtaT11B.1.5170.000427
ORF1ab/nsp3817Y817HTacCac11B.1.5650.00081
ORF1ab/nsp3817Y817delTAC---11B.1.5760.000907
ORF1ab/nsp3817Y817YtaCtaT11B.1.5760.000907
ORF1ab/nsp3817Y817StActCc11B.1.5800.004065
ORF1ab/nsp3817Y817LTAcCTc11B.1.617.10.000129
ORF1ab/nsp3817Y817PTACCCA11B.1.617.20.000004
ORF1ab/nsp3817Y817HTacCac11B.1.617.20.000004
ORF1ab/nsp3817Y817DTacGac11B.1.6200.000946
ORF1ab/nsp3817Y817delTAC---11B.1.6210.000089
ORF1ab/nsp3817Y817delTAC---11B.1.6300.005236
ORF1ab/nsp3817Y817XtaCtaA11B.1.930.000934
ORF1ab/nsp3817Y817delTAC---11B.150.017544
ORF1ab/nsp3817Y817YtaCtaT11B.350.007812
ORF1ab/nsp3817Y817YtaCtaT11B.400.000364
ORF1ab/nsp3817Y817delTAC---11C.370.000116
ORF1ab/nsp3817Y817XtaCtaG11D.20.000075
ORF1ab/nsp3817Y817YtaCtaT11N.30.005814
ORF1ab/nsp3817Y817del1taCta-11P.10.000016
ORF1ab/nsp3817Y817YtaCtaT11Q.10.000126