CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 802

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3802V802GV1620GnonsyngTtgGt6116100.9983635123-5125
ORF1ab/nsp3802V802GV1620GnonsyngTTgGA61110.001636665123-5125
ORF1ab/nsp3802V802VV1620VsyngtTgtA5873640.6201025123-5125
ORF1ab/nsp3802V802VV1620VsyngtTgtC5871990.3390125123-5125
ORF1ab/nsp3802V802VV1620VsyngtTgtG587240.04088595123-5125
ORF1ab/nsp3802V802IV1620InonsynGttAtt1391380.9928065123-5125
ORF1ab/nsp3802V802IV1620InonsynGtTAtA13910.007194245123-5125
ORF1ab/nsp3802V802FV1620FnonsynGttTtt12412415123-5125
ORF1ab/nsp3802V802delV1620deldelGTT---707015123-5125
ORF1ab/nsp3802V802AV1620AnonsyngTtgCt43420.9767445123-5125
ORF1ab/nsp3802V802AV1620AnonsyngTTgCA4310.02325585123-5125
ORF1ab/nsp3802V802del1V1620del1delgTtg-t8815123-5125
ORF1ab/nsp3802V802LV1620LnonsynGttCtt420.55123-5125
ORF1ab/nsp3802V802LV1620LnonsynGtTCtC420.55123-5125
ORF1ab/nsp3802V802CV1620CnonsynGTtTGt3315123-5125
ORF1ab/nsp3802V802SV1620SnonsynGTtTCt320.6666675123-5125
ORF1ab/nsp3802V802SV1620SnonsynGTtAGt310.3333335123-5125
ORF1ab/nsp3802V802DV1620DnonsyngTtgAt2215123-5125
ORF1ab/nsp3802V802EV1620EnonsyngTTgAG1115123-5125
ORF1ab/nsp3802V802del2V1620del2delgTTg--1115123-5125
ORF1ab/nsp3802V802RV1620RnonsynGTTAGA1115123-5125

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3802V802GgTtgGt610611All0.000117
ORF1ab/nsp3802V802GgTTgGA1611All0
ORF1ab/nsp3802V802VgtTgtA364587All0.00007
ORF1ab/nsp3802V802VgtTgtC199587All0.000038
ORF1ab/nsp3802V802VgtTgtG24587All0.000005
ORF1ab/nsp3802V802GgTtgGt549549B.1.1.3330.590958
ORF1ab/nsp3802V802VgtTgtA322328AY.440.00196
ORF1ab/nsp3802V802VgtTgtC5328AY.440.00003
ORF1ab/nsp3802V802VgtTgtG1328AY.440.000006
ORF1ab/nsp3802V802IGttAtt138139All0.000026
ORF1ab/nsp3802V802IGtTAtA1139All0
ORF1ab/nsp3802V802FGttTtt124124All0.000024
ORF1ab/nsp3802V802VgtTgtC108109AY.30.001074
ORF1ab/nsp3802V802VgtTgtG1109AY.30.00001
ORF1ab/nsp3802V802delGTT---7070All0.000013
ORF1ab/nsp3802V802AgTtgCt4243All0.000008
ORF1ab/nsp3802V802AgTTgCA143All0
ORF1ab/nsp3802V802VgtTgtA3338B.1.617.20.000124
ORF1ab/nsp3802V802VgtTgtC438B.1.617.20.000015
ORF1ab/nsp3802V802VgtTgtG138B.1.617.20.000004
ORF1ab/nsp3802V802IGttAtt3535B.1.1.70.000031
ORF1ab/nsp3802V802VgtTgtC2425AY.40.000037
ORF1ab/nsp3802V802VgtTgtG125AY.40.000002
ORF1ab/nsp3802V802IGttAtt1717B.1.617.20.000064
ORF1ab/nsp3802V802delGTT---1515B.10.000137
ORF1ab/nsp3802V802IGttAtt1414AY.440.000085
ORF1ab/nsp3802V802delGTT---1414B.1.1.70.000013
ORF1ab/nsp3802V802VgtTgtC913B.1.1.70.000008
ORF1ab/nsp3802V802VgtTgtG413B.1.1.70.000004
ORF1ab/nsp3802V802FGttTtt1313B.1.1600.000405
ORF1ab/nsp3802V802GgTtgGt1212AY.1210.001624
ORF1ab/nsp3802V802FGttTtt1111B.1.1770.000145
ORF1ab/nsp3802V802AgTtgCt1010B.1.20.000088
ORF1ab/nsp3802V802VgtTgtC89AY.1030.00005
ORF1ab/nsp3802V802VgtTgtA19AY.1030.000006
ORF1ab/nsp3802V802IGttAtt99B.1.6320.060403
ORF1ab/nsp3802V802del1gTtg-t88All0.000002
ORF1ab/nsp3802V802IGttAtt88AY.290.000126
ORF1ab/nsp3802V802FGttTtt88B.10.000073
ORF1ab/nsp3802V802FGttTtt88B.1.177.440.004152
ORF1ab/nsp3802V802IGttAtt77B.1.20.000062
ORF1ab/nsp3802V802IGttAtt66AY.1020.000159
ORF1ab/nsp3802V802AgTtgCt66AY.40.000009
ORF1ab/nsp3802V802IGttAtt66AY.40.000009
ORF1ab/nsp3802V802GgTtgGt66AY.98.10.000291
ORF1ab/nsp3802V802GgTtgGt66B.1.617.20.000023
ORF1ab/nsp3802V802VgtTgtC55AY.250.00003
ORF1ab/nsp3802V802GgTtgGt55B.10.000046
ORF1ab/nsp3802V802VgtTgtC45B.1.10.000073
ORF1ab/nsp3802V802VgtTgtG15B.1.10.000018
ORF1ab/nsp3802V802FGttTtt55B.1.1.390.002548
ORF1ab/nsp3802V802VgtTgtG55B.1.20.000044
ORF1ab/nsp3802V802IGttAtt55B.1.351.20.001513
ORF1ab/nsp3802V802LGtTCtC24All0
ORF1ab/nsp3802V802LGttCtt24All0
ORF1ab/nsp3802V802GgTtgGt44AY.1100.000451
ORF1ab/nsp3802V802VgtTgtC34AY.260.000085
ORF1ab/nsp3802V802VgtTgtA14AY.260.000028
ORF1ab/nsp3802V802VgtTgtC44AY.300.001583
ORF1ab/nsp3802V802VgtTgtC34AY.430.000013
ORF1ab/nsp3802V802VgtTgtA14AY.430.000004
ORF1ab/nsp3802V802FGttTtt44B.1.10.000073
ORF1ab/nsp3802V802AgTtgCt44B.1.1.70.000004
ORF1ab/nsp3802V802FGttTtt44B.1.160.140.008475
ORF1ab/nsp3802V802FGttTtt44B.1.160.160.003717
ORF1ab/nsp3802V802FGttTtt44B.1.2580.000266
ORF1ab/nsp3802V802VgtTgtC44B.1.3510.000119
ORF1ab/nsp3802V802VgtTgtA44P.1.170.000647
ORF1ab/nsp3802V802CGTtTGt33All0.000001
ORF1ab/nsp3802V802SGTtTCt23All0
ORF1ab/nsp3802V802SGTtAGt13All0
ORF1ab/nsp3802V802GgTtgGt33AY.1030.000019
ORF1ab/nsp3802V802AgTtgCt33AY.30.00003
ORF1ab/nsp3802V802VgtTgtG33AY.330.0002
ORF1ab/nsp3802V802delGTT---33AY.430.000013
ORF1ab/nsp3802V802GgTtgGt23AY.430.000009
ORF1ab/nsp3802V802GgTTgGA13AY.430.000004
ORF1ab/nsp3802V802VgtTgtC23B.10.000018
ORF1ab/nsp3802V802VgtTgtA13B.10.000009
ORF1ab/nsp3802V802AgTtgCt33B.1.10.000054
ORF1ab/nsp3802V802FGttTtt33B.1.1.70.000003
ORF1ab/nsp3802V802FGttTtt33B.1.160.120.019231
ORF1ab/nsp3802V802FGttTtt33B.1.160.150.014851
ORF1ab/nsp3802V802FGttTtt33B.1.160.320.012876
ORF1ab/nsp3802V802FGttTtt33B.1.177.230.009709
ORF1ab/nsp3802V802FGttTtt33B.1.20.000026
ORF1ab/nsp3802V802FGttTtt33B.1.2210.000213
ORF1ab/nsp3802V802FGttTtt33B.1.258.170.000312
ORF1ab/nsp3802V802delGTT---33B.1.617.10.000387
ORF1ab/nsp3802V802CGTtTGt220.111111
ORF1ab/nsp3802V802FGttTtt220.111111
ORF1ab/nsp3802V802LGtTCtC220.111111
ORF1ab/nsp3802V802GgTtgGt220.111111
ORF1ab/nsp3802V802delGTT---220.111111
ORF1ab/nsp3802V802DgTtgAt22All0
ORF1ab/nsp3802V802IGttAtt22AY.1030.000012
ORF1ab/nsp3802V802delGTT---22AY.250.000012
ORF1ab/nsp3802V802del1gTtg-t22AY.40.000003
ORF1ab/nsp3802V802IGttAtt12AY.430.000004
ORF1ab/nsp3802V802IGtTAtA12AY.430.000004
ORF1ab/nsp3802V802del1gTtg-t22AY.440.000012
ORF1ab/nsp3802V802GgTtgGt22AY.440.000012
ORF1ab/nsp3802V802IGttAtt22AY.750.000112
ORF1ab/nsp3802V802AgTtgCt22B.10.000018
ORF1ab/nsp3802V802AgTtgCt22B.1.1.1530.002191
ORF1ab/nsp3802V802del1gTtg-t22B.1.1.70.000002
ORF1ab/nsp3802V802SGTtTCt22B.1.1.70.000002
ORF1ab/nsp3802V802FGttTtt22B.1.160.100.016129
ORF1ab/nsp3802V802FGttTtt22B.1.160.200.017857
ORF1ab/nsp3802V802FGttTtt22B.1.160.260.004843
ORF1ab/nsp3802V802FGttTtt22B.1.160.90.014388
ORF1ab/nsp3802V802AgTtgCt22B.1.1770.000026
ORF1ab/nsp3802V802FGttTtt22B.1.177.430.002954
ORF1ab/nsp3802V802GgTtgGt22B.1.20.000018
ORF1ab/nsp3802V802FGttTtt22B.1.2360.004107
ORF1ab/nsp3802V802VgtTgtC12B.1.2580.000067
ORF1ab/nsp3802V802VgtTgtG12B.1.2580.000067
ORF1ab/nsp3802V802IGttAtt22B.1.258.170.000208
ORF1ab/nsp3802V802IGttAtt22B.1.2810.043478
ORF1ab/nsp3802V802FGttTtt22B.1.30.005236
ORF1ab/nsp3802V802delGTT---22B.1.360.000292
ORF1ab/nsp3802V802FGttTtt22B.1.36.10.002281
ORF1ab/nsp3802V802FGttTtt22B.1.36.350.005208
ORF1ab/nsp3802V802delGTT---22B.1.617.20.000008
ORF1ab/nsp3802V802delGTT---22B.1.6210.000177
ORF1ab/nsp3802V802VgtTgtC22C.370.000232
ORF1ab/nsp3802V802IGttAtt22P.50.027397
ORF1ab/nsp3802V802delGTT---11A.2.20.001689
ORF1ab/nsp3802V802GgTtgGt11A.2.40.003367
ORF1ab/nsp3802V802delGTT---11AH.30.003802
ORF1ab/nsp3802V802del2gTTg--11All0
ORF1ab/nsp3802V802EgTTgAG11All0
ORF1ab/nsp3802V802RGTTAGA11All0
ORF1ab/nsp3802V802GgTtgGt11AY.1020.000027
ORF1ab/nsp3802V802VgtTgtC11AY.1110.000183
ORF1ab/nsp3802V802IGttAtt11AY.1110.000183
ORF1ab/nsp3802V802AgTtgCt11AY.1170.000085
ORF1ab/nsp3802V802VgtTgtC11AY.1170.000085
ORF1ab/nsp3802V802IGttAtt11AY.1180.000063
ORF1ab/nsp3802V802AgTtgCt11AY.1190.000035
ORF1ab/nsp3802V802VgtTgtC11AY.1190.000035
ORF1ab/nsp3802V802IGttAtt11AY.120.10.000321
ORF1ab/nsp3802V802VgtTgtC11AY.200.000039
ORF1ab/nsp3802V802GgTtgGt11AY.230.00007
ORF1ab/nsp3802V802GgTtgGt11AY.330.000067
ORF1ab/nsp3802V802GgTtgGt11AY.390.000025
ORF1ab/nsp3802V802VgtTgtC11AY.390.000025
ORF1ab/nsp3802V802FGttTtt11AY.40.000002
ORF1ab/nsp3802V802GgTtgGt11AY.40.000002
ORF1ab/nsp3802V802delGTT---11AY.40.000002
ORF1ab/nsp3802V802IGttAtt11AY.4.20.000022
ORF1ab/nsp3802V802delGTT---11AY.4.50.000107
ORF1ab/nsp3802V802FGttTtt11AY.420.00004
ORF1ab/nsp3802V802SGTtAGt11AY.430.000004
ORF1ab/nsp3802V802FGttTtt11AY.430.000004
ORF1ab/nsp3802V802RGTTAGA11AY.430.000004
ORF1ab/nsp3802V802CGTtTGt11AY.440.000006
ORF1ab/nsp3802V802IGttAtt11AY.450.000122
ORF1ab/nsp3802V802AgTtgCt11AY.46.40.000165
ORF1ab/nsp3802V802VgtTgtC11AY.46.60.000072
ORF1ab/nsp3802V802del1gTtg-t11AY.470.000031
ORF1ab/nsp3802V802IGttAtt11AY.50.000021
ORF1ab/nsp3802V802IGttAtt11AY.5.40.000277
ORF1ab/nsp3802V802FGttTtt11AY.580.000907
ORF1ab/nsp3802V802IGttAtt11AY.690.000187
ORF1ab/nsp3802V802IGttAtt11AY.70.000196
ORF1ab/nsp3802V802delGTT---11AY.7.20.000559
ORF1ab/nsp3802V802VgtTgtC11AY.710.000475
ORF1ab/nsp3802V802GgTtgGt11AY.740.000116
ORF1ab/nsp3802V802delGTT---11AY.750.000056
ORF1ab/nsp3802V802VgtTgtG11AY.750.000056
ORF1ab/nsp3802V802LGttCtt11AY.790.001211
ORF1ab/nsp3802V802IGttAtt11AY.80.000606
ORF1ab/nsp3802V802FGttTtt11AY.80.000606
ORF1ab/nsp3802V802IGttAtt11AY.90.000068
ORF1ab/nsp3802V802GgTtgGt11AY.980.000079
ORF1ab/nsp3802V802GgTtgGt11AY.990.001049
ORF1ab/nsp3802V802VgtTgtG11AY.99.20.000092
ORF1ab/nsp3802V802IGttAtt11AY.99.20.000092
ORF1ab/nsp3802V802VgtTgtC11AZ.20.000821
ORF1ab/nsp3802V802IGttAtt11AZ.60.008403
ORF1ab/nsp3802V802AgTTgCA11B0.000128
ORF1ab/nsp3802V802IGttAtt11B.10.000009
ORF1ab/nsp3802V802GgTtgGt11B.1.10.000018
ORF1ab/nsp3802V802VgtTgtC11B.1.1.1210.002427
ORF1ab/nsp3802V802delGTT---11B.1.1.1420.017544
ORF1ab/nsp3802V802IGttAtt11B.1.1.1890.001513
ORF1ab/nsp3802V802VgtTgtC11B.1.1.280.000311
ORF1ab/nsp3802V802GgTtgGt11B.1.1.3020.002075
ORF1ab/nsp3802V802delGTT---11B.1.1.3150.008475
ORF1ab/nsp3802V802VgtTgtG11B.1.1.3150.008475
ORF1ab/nsp3802V802GgTtgGt11B.1.1.3160.000925
ORF1ab/nsp3802V802VgtTgtC11B.1.1.3160.000925
ORF1ab/nsp3802V802FGttTtt11B.1.1.370.000193
ORF1ab/nsp3802V802AgTtgCt11B.1.1.370.000193
ORF1ab/nsp3802V802VgtTgtG11B.1.1.3770.001381
ORF1ab/nsp3802V802delGTT---11B.1.1.390.00051
ORF1ab/nsp3802V802DgTtgAt11B.1.1.4110.014706
ORF1ab/nsp3802V802EgTTgAG11B.1.1.4110.014706
ORF1ab/nsp3802V802delGTT---11B.1.1.5190.00004
ORF1ab/nsp3802V802DgTtgAt11B.1.1.5190.00004
ORF1ab/nsp3802V802AgTtgCt11B.1.1.5190.00004
ORF1ab/nsp3802V802GgTtgGt11B.1.1.70.000001
ORF1ab/nsp3802V802LGttCtt11B.1.1.70.000001
ORF1ab/nsp3802V802AgTtgCt11B.1.1.700.000341
ORF1ab/nsp3802V802FGttTtt11B.1.1.700.000341
ORF1ab/nsp3802V802delGTT---11B.1.1400.018868
ORF1ab/nsp3802V802FGttTtt11B.1.1580.02381
ORF1ab/nsp3802V802VgtTgtG11B.1.1600.000031
ORF1ab/nsp3802V802FGttTtt11B.1.160.290.004219
ORF1ab/nsp3802V802delGTT---11B.1.1770.000013
ORF1ab/nsp3802V802VgtTgtA11B.1.1770.000013
ORF1ab/nsp3802V802FGttTtt11B.1.177.120.000152
ORF1ab/nsp3802V802delGTT---11B.1.177.150.000631
ORF1ab/nsp3802V802FGttTtt11B.1.177.280.007407
ORF1ab/nsp3802V802AgTtgCt11B.1.177.430.001477
ORF1ab/nsp3802V802FGttTtt11B.1.177.530.002392
ORF1ab/nsp3802V802delGTT---11B.1.177.620.001192
ORF1ab/nsp3802V802AgTtgCt11B.1.177.650.000665
ORF1ab/nsp3802V802delGTT---11B.1.177.680.015152
ORF1ab/nsp3802V802VgtTgtC11B.1.177.810.000189
ORF1ab/nsp3802V802FGttTtt11B.1.177.810.000189
ORF1ab/nsp3802V802del1gTtg-t11B.1.20.000009
ORF1ab/nsp3802V802delGTT---11B.1.20.000009
ORF1ab/nsp3802V802IGttAtt11B.1.2210.000071
ORF1ab/nsp3802V802FGttTtt11B.1.2400.000216
ORF1ab/nsp3802V802AgTtgCt11B.1.2430.00007
ORF1ab/nsp3802V802GgTtgGt11B.1.2430.00007
ORF1ab/nsp3802V802delGTT---11B.1.3190.003049
ORF1ab/nsp3802V802IGttAtt11B.1.3510.00003
ORF1ab/nsp3802V802GgTtgGt11B.1.3510.00003
ORF1ab/nsp3802V802delGTT---11B.1.3750.00082
ORF1ab/nsp3802V802IGttAtt11B.1.4000.000429
ORF1ab/nsp3802V802IGttAtt11B.1.4050.012346
ORF1ab/nsp3802V802delGTT---11B.1.4150.014286
ORF1ab/nsp3802V802delGTT---11B.1.416.10.001563
ORF1ab/nsp3802V802FGttTtt11B.1.4290.000024
ORF1ab/nsp3802V802FGttTtt11B.1.4690.00361
ORF1ab/nsp3802V802FGttTtt11B.1.5030.002488
ORF1ab/nsp3802V802delGTT---11B.1.5600.00463
ORF1ab/nsp3802V802delGTT---11B.1.5760.000907
ORF1ab/nsp3802V802IGttAtt11B.1.5960.000087
ORF1ab/nsp3802V802FGttTtt11B.1.5990.00365
ORF1ab/nsp3802V802AgTtgCt11B.1.617.20.000004
ORF1ab/nsp3802V802delGTT---11B.150.017544
ORF1ab/nsp3802V802delGTT---11B.340.013699
ORF1ab/nsp3802V802GgTtgGt11C.350.000774
ORF1ab/nsp3802V802delGTT---11C.370.000116
ORF1ab/nsp3802V802FGttTtt11D.20.000075
ORF1ab/nsp3802V802GgTtgGt11P.10.000016
ORF1ab/nsp3802V802del2gTTg--11P.1.10.000318
ORF1ab/nsp3802V802VgtTgtC11P.20.000187
ORF1ab/nsp3802V802VgtTgtG11R.10.00009