CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 801 | Y801Y | Y1619Y | syn | taT | taC | 771 | 771 | 1 | 5120-5122 |
ORF1ab/nsp3 | 801 | Y801N | Y1619N | nonsyn | Tat | Aat | 83 | 83 | 1 | 5120-5122 |
ORF1ab/nsp3 | 801 | Y801del | Y1619del | del | TAT | --- | 68 | 68 | 1 | 5120-5122 |
ORF1ab/nsp3 | 801 | Y801F | Y1619F | nonsyn | tAt | tTt | 45 | 45 | 1 | 5120-5122 |
ORF1ab/nsp3 | 801 | Y801X | Y1619X | nonsyn | taT | taA | 14 | 8 | 0.571429 | 5120-5122 |
ORF1ab/nsp3 | 801 | Y801X | Y1619X | nonsyn | taT | taG | 14 | 5 | 0.357143 | 5120-5122 |
ORF1ab/nsp3 | 801 | Y801X | Y1619X | nonsyn | tAT | tGA | 14 | 1 | 0.0714286 | 5120-5122 |
ORF1ab/nsp3 | 801 | Y801C | Y1619C | nonsyn | tAt | tGt | 11 | 8 | 0.727273 | 5120-5122 |
ORF1ab/nsp3 | 801 | Y801C | Y1619C | nonsyn | tAT | tGC | 11 | 3 | 0.272727 | 5120-5122 |
ORF1ab/nsp3 | 801 | Y801H | Y1619H | nonsyn | Tat | Cat | 10 | 10 | 1 | 5120-5122 |
ORF1ab/nsp3 | 801 | Y801del2 | Y1619del2 | del | TAt | --t | 3 | 3 | 1 | 5120-5122 |
ORF1ab/nsp3 | 801 | Y801L | Y1619L | nonsyn | tAT | tTA | 3 | 3 | 1 | 5120-5122 |
ORF1ab/nsp3 | 801 | Y801S | Y1619S | nonsyn | tAt | tCt | 1 | 1 | 1 | 5120-5122 |
ORF1ab/nsp3 | 801 | Y801D | Y1619D | nonsyn | Tat | Gat | 1 | 1 | 1 | 5120-5122 |
ORF1ab/nsp3 | 801 | Y801del1 | Y1619del1 | del | tAt | t-t | 1 | 1 | 1 | 5120-5122 |
ORF1ab/nsp3 | 801 | Y801E | Y1619E | nonsyn | TaT | GaA | 1 | 1 | 1 | 5120-5122 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 771 | 771 | All | 0.000147 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 513 | 513 | B.1.587 | 0.973435 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 83 | 83 | All | 0.000016 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 73 | 73 | B.1.1.7 | 0.000065 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 68 | 68 | All | 0.000013 |
ORF1ab/nsp3 | 801 | Y801F | tAt | tTt | 45 | 45 | All | 0.000009 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 37 | 37 | B.1.160 | 0.001154 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 23 | 23 | AY.59 | 0.012182 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 19 | 19 | B.1 | 0.000174 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 18 | 18 | A.2.4 | 0.060606 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 17 | 17 | B.1.177.81 | 0.003218 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 15 | 15 | B.1 | 0.000137 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 15 | 15 | B.1 | 0.000137 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 801 | Y801X | taT | taA | 8 | 14 | All | 0.000002 |
ORF1ab/nsp3 | 801 | Y801X | taT | taG | 5 | 14 | All | 0.000001 |
ORF1ab/nsp3 | 801 | Y801X | tAT | tGA | 1 | 14 | All | 0 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 14 | 14 | P.1.2 | 0.016185 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 13 | 13 | AY.4 | 0.00002 |
ORF1ab/nsp3 | 801 | Y801C | tAt | tGt | 8 | 11 | All | 0.000002 |
ORF1ab/nsp3 | 801 | Y801C | tAT | tGC | 3 | 11 | All | 0.000001 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 11 | 11 | AY.26 | 0.000311 |
ORF1ab/nsp3 | 801 | Y801H | Tat | Cat | 10 | 10 | All | 0.000002 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 8 | 8 | AY.25 | 0.000048 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 6 | 6 | AY.27 | 0.000388 |
ORF1ab/nsp3 | 801 | Y801F | tAt | tTt | 6 | 6 | B.1.160 | 0.000187 |
ORF1ab/nsp3 | 801 | Y801F | tAt | tTt | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 801 | Y801X | taT | taA | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 4 | 4 | B.1.595 | 0.001044 |
ORF1ab/nsp3 | 801 | Y801del2 | TAt | --t | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 801 | Y801L | tAT | tTA | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 801 | Y801F | tAt | tTt | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 801 | Y801F | tAt | tTt | 3 | 3 | B.1.177.23 | 0.009709 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 801 | Y801F | tAt | tTt | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 801 | Y801L | tAT | tTA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 801 | Y801F | tAt | tTt | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 801 | Y801C | tAt | tGt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 801 | Y801H | Tat | Cat | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 801 | Y801C | tAt | tGt | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 801 | Y801C | tAT | tGC | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 801 | Y801F | tAt | tTt | 2 | 2 | B.1.160.14 | 0.004237 |
ORF1ab/nsp3 | 801 | Y801F | tAt | tTt | 2 | 2 | B.1.160.32 | 0.008584 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 801 | Y801F | tAt | tTt | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp3 | 801 | Y801X | taT | taG | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 801 | Y801X | taT | taA | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 801 | Y801F | tAt | tTt | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 801 | Y801del2 | TAt | --t | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 801 | Y801D | Tat | Gat | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp3 | 801 | Y801E | TaT | GaA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 801 | Y801del1 | tAt | t-t | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 801 | Y801D | Tat | Gat | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 801 | Y801S | tAt | tCt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 1 | 1 | AM.4 | 0.003571 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 801 | Y801C | tAt | tGt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 801 | Y801F | tAt | tTt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 801 | Y801H | Tat | Cat | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 801 | Y801C | tAt | tGt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 801 | Y801H | Tat | Cat | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 801 | Y801X | taT | taG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 801 | Y801H | Tat | Cat | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 801 | Y801C | tAt | tGt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 801 | Y801L | tAT | tTA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 801 | Y801H | Tat | Cat | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 801 | Y801C | tAT | tGC | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 801 | Y801H | Tat | Cat | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 801 | Y801X | taT | taG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 801 | Y801del2 | TAt | --t | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 801 | Y801H | Tat | Cat | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 801 | Y801F | tAt | tTt | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 801 | Y801F | tAt | tTt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 801 | Y801F | tAt | tTt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 801 | Y801C | tAt | tGt | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp3 | 801 | Y801X | tAT | tGA | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 801 | Y801F | tAt | tTt | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp3 | 801 | Y801X | taT | taA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 801 | Y801F | tAt | tTt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 1 | 1 | B.1.160.10 | 0.008065 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 801 | Y801F | tAt | tTt | 1 | 1 | B.1.177.24 | 0.001295 |
ORF1ab/nsp3 | 801 | Y801F | tAt | tTt | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp3 | 801 | Y801F | tAt | tTt | 1 | 1 | B.1.177.89 | 0.02439 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 801 | Y801F | tAt | tTt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 801 | Y801F | tAt | tTt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 801 | Y801X | taT | taA | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 1 | 1 | B.1.258.4 | 0.003448 |
ORF1ab/nsp3 | 801 | Y801X | taT | taA | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 801 | Y801F | tAt | tTt | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 801 | Y801H | Tat | Cat | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 801 | Y801C | tAt | tGt | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 801 | Y801S | tAt | tCt | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 801 | Y801H | Tat | Cat | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 801 | Y801F | tAt | tTt | 1 | 1 | B.1.450 | 0.011364 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 801 | Y801F | tAt | tTt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 801 | Y801Y | taT | taC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 1 | 1 | B.1.596.1 | 0.009346 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 801 | Y801E | TaT | GaA | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 801 | Y801C | tAT | tGC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 801 | Y801F | tAt | tTt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 801 | Y801del1 | tAt | t-t | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp3 | 801 | Y801X | taT | taG | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 1 | 1 | C.2 | 0.016129 |
ORF1ab/nsp3 | 801 | Y801del | TAT | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 801 | Y801X | taT | taG | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 801 | Y801N | Tat | Aat | 1 | 1 | P.1 | 0.000016 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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