CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 792 | H792Y | H1610Y | nonsyn | Cat | Tat | 1333 | 1333 | 1 | 5093-5095 |
ORF1ab/nsp3 | 792 | H792H | H1610H | syn | caT | caC | 531 | 531 | 1 | 5093-5095 |
ORF1ab/nsp3 | 792 | H792R | H1610R | nonsyn | cAt | cGt | 482 | 482 | 1 | 5093-5095 |
ORF1ab/nsp3 | 792 | H792L | H1610L | nonsyn | cAt | cTt | 196 | 193 | 0.984694 | 5093-5095 |
ORF1ab/nsp3 | 792 | H792L | H1610L | nonsyn | cAT | cTC | 196 | 2 | 0.0102041 | 5093-5095 |
ORF1ab/nsp3 | 792 | H792L | H1610L | nonsyn | cAT | cTA | 196 | 1 | 0.00510204 | 5093-5095 |
ORF1ab/nsp3 | 792 | H792N | H1610N | nonsyn | Cat | Aat | 139 | 139 | 1 | 5093-5095 |
ORF1ab/nsp3 | 792 | H792Q | H1610Q | nonsyn | caT | caA | 89 | 86 | 0.966292 | 5093-5095 |
ORF1ab/nsp3 | 792 | H792Q | H1610Q | nonsyn | caT | caG | 89 | 3 | 0.0337079 | 5093-5095 |
ORF1ab/nsp3 | 792 | H792del | H1610del | del | CAT | --- | 73 | 73 | 1 | 5093-5095 |
ORF1ab/nsp3 | 792 | H792P | H1610P | nonsyn | cAt | cCt | 18 | 16 | 0.888889 | 5093-5095 |
ORF1ab/nsp3 | 792 | H792P | H1610P | nonsyn | cAT | cCA | 18 | 2 | 0.111111 | 5093-5095 |
ORF1ab/nsp3 | 792 | H792S | H1610S | nonsyn | CAt | TCt | 3 | 2 | 0.666667 | 5093-5095 |
ORF1ab/nsp3 | 792 | H792S | H1610S | nonsyn | CAt | AGt | 3 | 1 | 0.333333 | 5093-5095 |
ORF1ab/nsp3 | 792 | H792V | H1610V | nonsyn | CAt | GTt | 2 | 1 | 0.5 | 5093-5095 |
ORF1ab/nsp3 | 792 | H792V | H1610V | nonsyn | CAT | GTA | 2 | 1 | 0.5 | 5093-5095 |
ORF1ab/nsp3 | 792 | H792A | H1610A | nonsyn | CAt | GCt | 2 | 1 | 0.5 | 5093-5095 |
ORF1ab/nsp3 | 792 | H792A | H1610A | nonsyn | CAT | GCA | 2 | 1 | 0.5 | 5093-5095 |
ORF1ab/nsp3 | 792 | H792I | H1610I | nonsyn | CAt | ATt | 2 | 1 | 0.5 | 5093-5095 |
ORF1ab/nsp3 | 792 | H792I | H1610I | nonsyn | CAT | ATA | 2 | 1 | 0.5 | 5093-5095 |
ORF1ab/nsp3 | 792 | H792T | H1610T | nonsyn | CAt | ACt | 2 | 1 | 0.5 | 5093-5095 |
ORF1ab/nsp3 | 792 | H792T | H1610T | nonsyn | CAT | ACA | 2 | 1 | 0.5 | 5093-5095 |
ORF1ab/nsp3 | 792 | H792del1 | H1610del1 | del | caT | ca- | 2 | 1 | 0.5 | 5093-5095 |
ORF1ab/nsp3 | 792 | H792del1 | H1610del1 | del | Cat | -at | 2 | 1 | 0.5 | 5093-5095 |
ORF1ab/nsp3 | 792 | H792D | H1610D | nonsyn | Cat | Gat | 1 | 1 | 1 | 5093-5095 |
ORF1ab/nsp3 | 792 | H792E | H1610E | nonsyn | CaT | GaA | 1 | 1 | 1 | 5093-5095 |
ORF1ab/nsp3 | 792 | H792K | H1610K | nonsyn | CaT | AaA | 1 | 1 | 1 | 5093-5095 |
ORF1ab/nsp3 | 792 | H792del2 | H1610del2 | del | CAt | --t | 1 | 1 | 1 | 5093-5095 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1333 | 1333 | All | 0.000255 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 531 | 531 | All | 0.000102 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 482 | 482 | All | 0.000092 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 315 | 315 | AY.121 | 0.042625 |
ORF1ab/nsp3 | 792 | H792L | cAt | cTt | 193 | 196 | All | 0.000037 |
ORF1ab/nsp3 | 792 | H792L | cAT | cTC | 2 | 196 | All | 0 |
ORF1ab/nsp3 | 792 | H792L | cAT | cTA | 1 | 196 | All | 0 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 196 | 196 | B.1.1.7 | 0.000175 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 193 | 193 | AY.29 | 0.003044 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 163 | 163 | B.1.617.2 | 0.000614 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 139 | 139 | All | 0.000027 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 133 | 133 | B.1.1.7 | 0.000119 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 114 | 114 | AY.44 | 0.000694 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 100 | 100 | B.1.1.7 | 0.00009 |
ORF1ab/nsp3 | 792 | H792Q | caT | caA | 86 | 89 | All | 0.000016 |
ORF1ab/nsp3 | 792 | H792Q | caT | caG | 3 | 89 | All | 0.000001 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 84 | 84 | B.1.438.1 | 0.00901 |
ORF1ab/nsp3 | 792 | H792L | cAt | cTt | 77 | 77 | AY.69 | 0.014374 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 73 | 73 | All | 0.000014 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 71 | 71 | B.1.629 | 0.946667 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 44 | 44 | AY.25 | 0.000265 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 42 | 42 | AY.75 | 0.002353 |
ORF1ab/nsp3 | 792 | H792L | cAt | cTt | 39 | 41 | B.1.1.7 | 0.000035 |
ORF1ab/nsp3 | 792 | H792L | cAT | cTC | 2 | 41 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 792 | H792L | cAt | cTt | 38 | 38 | AY.4 | 0.000059 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 37 | 37 | B.1.617.2 | 0.000139 |
ORF1ab/nsp3 | 792 | H792Q | caT | caA | 31 | 31 | AY.4 | 0.000048 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 31 | 31 | B.1.2 | 0.000273 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 27 | 27 | B.1 | 0.000247 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 27 | 27 | P.1 | 0.000425 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 25 | 25 | AY.29 | 0.000394 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 25 | 25 | B.1.160 | 0.00078 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 25 | 25 | B.1.234 | 0.003299 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 24 | 24 | AY.103 | 0.000149 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 24 | 24 | AY.4 | 0.000037 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 22 | 22 | B.1.160 | 0.000686 |
ORF1ab/nsp3 | 792 | H792Q | caT | caA | 21 | 21 | AY.4.5 | 0.002257 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 20 | 20 | AY.44 | 0.000122 |
ORF1ab/nsp3 | 792 | H792P | cAt | cCt | 16 | 18 | All | 0.000003 |
ORF1ab/nsp3 | 792 | H792P | cAT | cCA | 2 | 18 | All | 0 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 18 | 18 | B.1.1.284 | 0.001933 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 17 | 17 | AY.3 | 0.000169 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 17 | 17 | AY.43 | 0.000075 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 17 | 17 | B.1.1.7 | 0.000015 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 17 | 17 | B.1.429 | 0.0004 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 16 | 16 | B.1.160 | 0.000499 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 16 | 16 | B.1.160.14 | 0.033898 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 15 | 15 | AY.4 | 0.000023 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 15 | 15 | AY.99.2 | 0.001382 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 14 | 14 | AY.100 | 0.000644 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 14 | 14 | AY.103 | 0.000087 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 14 | 14 | B.1.2 | 0.000123 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 13 | 13 | AY.54 | 0.00124 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 13 | 13 | B.1.617.2 | 0.000049 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 11 | 11 | B.1.177 | 0.000145 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 10 | 10 | AY.43 | 0.000044 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 10 | 10 | P.1.15 | 0.002323 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 9 | 9 | AY.3.1 | 0.000767 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 9 | 9 | AY.39 | 0.000222 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 9 | 9 | B.1.258.11 | 0.003567 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 9 | 9 | B.1.526 | 0.000212 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 8 | 8 | B.1.221 | 0.000568 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 8 | 8 | B.1.351 | 0.000238 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp3 | 792 | H792L | cAt | cTt | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 6 | 6 | B.1.234 | 0.000792 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 6 | 6 | B.1.241 | 0.00487 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 792 | H792Q | caT | caA | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp3 | 792 | H792Q | caT | caA | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 5 | 5 | B.1.1.222 | 0.00102 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 5 | 5 | B.1.160.20 | 0.044643 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 5 | 5 | B.1.177.44 | 0.002595 |
ORF1ab/nsp3 | 792 | H792L | cAt | cTt | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 5 | 5 | B.1.311 | 0.001373 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 5 | 5 | B.1.36.1 | 0.005701 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 5 | 5 | B.1.470 | 0.007022 |
ORF1ab/nsp3 | 792 | H792Q | caT | caA | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 792 | H792P | cAt | cCt | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 792 | H792P | cAT | cCA | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 792 | H792L | cAt | cTt | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp3 | 792 | H792Q | caT | caA | 4 | 4 | AY.8 | 0.002424 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 4 | 4 | B.1.1.39 | 0.002039 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 4 | 4 | B.1.160.15 | 0.019802 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 4 | 4 | B.1.160.16 | 0.003717 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 4 | 4 | B.1.258.17 | 0.000416 |
ORF1ab/nsp3 | 792 | H792L | cAt | cTt | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 4 | 4 | B.1.36.29 | 0.002069 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 4 | 4 | B.1.36.35 | 0.010417 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 4 | 4 | Q.7 | 0.004444 |
ORF1ab/nsp3 | 792 | H792S | CAt | TCt | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 792 | H792S | CAt | AGt | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp3 | 792 | H792Q | caT | caA | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 3 | 3 | B.1.160.14 | 0.006356 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 3 | 3 | B.1.160.27 | 0.045455 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 3 | 3 | B.1.160.9 | 0.021583 |
ORF1ab/nsp3 | 792 | H792L | cAt | cTt | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp3 | 792 | H792Q | caT | caA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 792 | H792I | CAt | ATt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 792 | H792A | CAt | GCt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 792 | H792T | CAt | ACt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 792 | H792V | CAT | GTA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 792 | H792I | CAT | ATA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 792 | H792T | CAT | ACA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 792 | H792A | CAT | GCA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 792 | H792V | CAt | GTt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 792 | H792L | cAT | cTA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 792 | H792L | cAt | cTt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 792 | H792I | CAT | ATA | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 792 | H792I | CAt | ATt | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 792 | H792V | CAT | GTA | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 792 | H792del1 | caT | ca- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 792 | H792A | CAT | GCA | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 792 | H792T | CAt | ACt | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 792 | H792T | CAT | ACA | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 792 | H792A | CAt | GCt | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 792 | H792del1 | Cat | -at | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 792 | H792V | CAt | GTt | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 792 | H792P | cAt | cCt | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 792 | H792Q | caT | caA | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 792 | H792Q | caT | caA | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 2 | 2 | AY.8 | 0.001212 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 2 | 2 | AY.82 | 0.002714 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 792 | H792P | cAt | cCt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 792 | H792P | cAt | cCt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 792 | H792L | cAt | cTt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 2 | 2 | B.1.1.406 | 0.012987 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 2 | 2 | B.1.1.418 | 0.045455 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 2 | 2 | B.1.1.445 | 0.074074 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 2 | 2 | B.1.160.29 | 0.008439 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 2 | 2 | B.1.160.30 | 0.005952 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 2 | 2 | B.1.160.32 | 0.008584 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 2 | 2 | B.1.177.43 | 0.002954 |
ORF1ab/nsp3 | 792 | H792L | cAt | cTt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 2 | 2 | B.1.236 | 0.004107 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 792 | H792P | cAt | cCt | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 792 | H792L | cAt | cTt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 792 | H792E | CaT | GaA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 792 | H792K | CaT | AaA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 792 | H792D | Cat | Gat | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | AF.1 | 0.037037 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp3 | 792 | H792E | CaT | GaA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 792 | H792D | Cat | Gat | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 792 | H792del2 | CAt | --t | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 792 | H792K | CaT | AaA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 792 | H792L | cAt | cTt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 792 | H792L | cAt | cTt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 792 | H792L | cAt | cTt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 792 | H792L | cAt | cTt | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 792 | H792P | cAt | cCt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 792 | H792Q | caT | caG | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 792 | H792Q | caT | caA | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 792 | H792L | cAt | cTt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 792 | H792L | cAt | cTt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 792 | H792Q | caT | caG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 792 | H792L | cAt | cTt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 792 | H792L | cAt | cTt | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 792 | H792Q | caT | caA | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 792 | H792P | cAt | cCt | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 792 | H792L | cAt | cTt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 792 | H792L | cAt | cTt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 792 | H792Q | caT | caA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 792 | H792S | CAt | TCt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 792 | H792S | CAt | TCt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp3 | 792 | H792Q | caT | caG | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.1.219 | 0.005 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.1.299 | 0.012195 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | B.1.1.506 | 0.037037 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 792 | H792S | CAt | AGt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 792 | H792del2 | CAt | --t | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.1.75 | 0.010638 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | B.1.158 | 0.02381 |
ORF1ab/nsp3 | 792 | H792P | cAt | cCt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | B.1.160.10 | 0.008065 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | B.1.160.11 | 0.005714 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | B.1.160.12 | 0.00641 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | B.1.160.22 | 0.006757 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp3 | 792 | H792P | cAt | cCt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | B.1.177.71 | 0.010101 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | B.1.177.89 | 0.02439 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 792 | H792del1 | caT | ca- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.220 | 0.01087 |
ORF1ab/nsp3 | 792 | H792Q | caT | caA | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 1 | 1 | B.1.225 | 0.015385 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.313 | 0.006579 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 792 | H792P | cAt | cCt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 792 | H792P | cAt | cCt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 792 | H792Q | caT | caA | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 792 | H792del1 | Cat | -at | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.1.84 | 0.020833 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | B.12 | 0.00641 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 792 | H792N | Cat | Aat | 1 | 1 | C.36.2 | 0.034483 |
ORF1ab/nsp3 | 792 | H792del | CAT | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 792 | H792Q | caT | caA | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 792 | H792R | cAt | cGt | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 792 | H792Y | Cat | Tat | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 792 | H792H | caT | caC | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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