CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 774 | Q774Q | Q1592Q | syn | caA | caG | 11346 | 11346 | 1 | 5039-5041 |
ORF1ab/nsp3 | 774 | Q774R | Q1592R | nonsyn | cAa | cGa | 1368 | 1366 | 0.998538 | 5039-5041 |
ORF1ab/nsp3 | 774 | Q774R | Q1592R | nonsyn | cAA | cGT | 1368 | 1 | 0.000730994 | 5039-5041 |
ORF1ab/nsp3 | 774 | Q774R | Q1592R | nonsyn | cAA | cGG | 1368 | 1 | 0.000730994 | 5039-5041 |
ORF1ab/nsp3 | 774 | Q774del | Q1592del | del | CAA | --- | 93 | 93 | 1 | 5039-5041 |
ORF1ab/nsp3 | 774 | Q774K | Q1592K | nonsyn | Caa | Aaa | 86 | 86 | 1 | 5039-5041 |
ORF1ab/nsp3 | 774 | Q774L | Q1592L | nonsyn | cAa | cTa | 57 | 57 | 1 | 5039-5041 |
ORF1ab/nsp3 | 774 | Q774H | Q1592H | nonsyn | caA | caC | 37 | 30 | 0.810811 | 5039-5041 |
ORF1ab/nsp3 | 774 | Q774H | Q1592H | nonsyn | caA | caT | 37 | 7 | 0.189189 | 5039-5041 |
ORF1ab/nsp3 | 774 | Q774X | Q1592X | nonsyn | Caa | Taa | 9 | 9 | 1 | 5039-5041 |
ORF1ab/nsp3 | 774 | Q774P | Q1592P | nonsyn | cAa | cCa | 8 | 7 | 0.875 | 5039-5041 |
ORF1ab/nsp3 | 774 | Q774P | Q1592P | nonsyn | cAA | cCC | 8 | 1 | 0.125 | 5039-5041 |
ORF1ab/nsp3 | 774 | Q774del1 | Q1592del1 | del | CAa | T-a | 3 | 1 | 0.333333 | 5039-5041 |
ORF1ab/nsp3 | 774 | Q774del1 | Q1592del1 | del | Caa | -aa | 3 | 1 | 0.333333 | 5039-5041 |
ORF1ab/nsp3 | 774 | Q774del1 | Q1592del1 | del | caA | ca- | 3 | 1 | 0.333333 | 5039-5041 |
ORF1ab/nsp3 | 774 | Q774G | Q1592G | nonsyn | CAA | GGT | 1 | 1 | 1 | 5039-5041 |
ORF1ab/nsp3 | 774 | Q774T | Q1592T | nonsyn | CAa | ACa | 1 | 1 | 1 | 5039-5041 |
ORF1ab/nsp3 | 774 | Q774E | Q1592E | nonsyn | Caa | Gaa | 1 | 1 | 1 | 5039-5041 |
ORF1ab/nsp3 | 774 | Q774D | Q1592D | nonsyn | CaA | GaC | 1 | 1 | 1 | 5039-5041 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 11346 | 11346 | All | 0.00217 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 11074 | 11074 | B.1.1.7 | 0.009914 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 1366 | 1368 | All | 0.000261 |
ORF1ab/nsp3 | 774 | Q774R | cAA | cGT | 1 | 1368 | All | 0 |
ORF1ab/nsp3 | 774 | Q774R | cAA | cGG | 1 | 1368 | All | 0 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 806 | 806 | B.1.1.316 | 0.745606 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 156 | 156 | B.1.630 | 0.816754 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 93 | 93 | All | 0.000018 |
ORF1ab/nsp3 | 774 | Q774K | Caa | Aaa | 86 | 86 | All | 0.000016 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 74 | 74 | B.1.637 | 0.005407 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 68 | 68 | R.2 | 0.985507 |
ORF1ab/nsp3 | 774 | Q774L | cAa | cTa | 57 | 57 | All | 0.000011 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 54 | 54 | Q.8 | 0.008905 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 48 | 48 | B.1.1 | 0.000871 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 43 | 43 | B.1 | 0.000394 |
ORF1ab/nsp3 | 774 | Q774H | caA | caC | 30 | 37 | All | 0.000006 |
ORF1ab/nsp3 | 774 | Q774H | caA | caT | 7 | 37 | All | 0.000001 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 36 | 36 | B.1.1.408 | 1 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 34 | 34 | B.1.393 | 0.971429 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 29 | 29 | B.1.1.7 | 0.000026 |
ORF1ab/nsp3 | 774 | Q774L | cAa | cTa | 25 | 25 | B.1.427 | 0.001262 |
ORF1ab/nsp3 | 774 | Q774L | cAa | cTa | 24 | 24 | B.1.1.7 | 0.000021 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 23 | 23 | AY.84 | 0.010061 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 19 | 19 | B.1.1.407 | 0.791667 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 18 | 19 | B.1.1.7 | 0.000016 |
ORF1ab/nsp3 | 774 | Q774R | cAA | cGT | 1 | 19 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 17 | 17 | B.1.378 | 0.116438 |
ORF1ab/nsp3 | 774 | Q774K | Caa | Aaa | 16 | 16 | B.1.2 | 0.000141 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 16 | 16 | B.1.370 | 0.128 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 15 | 15 | B.1 | 0.000137 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 14 | 14 | AY.25 | 0.000084 |
ORF1ab/nsp3 | 774 | Q774K | Caa | Aaa | 13 | 13 | AY.47 | 0.000404 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 11 | 11 | B.1.1.284 | 0.001181 |
ORF1ab/nsp3 | 774 | Q774K | Caa | Aaa | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp3 | 774 | Q774X | Caa | Taa | 9 | 9 | All | 0.000002 |
ORF1ab/nsp3 | 774 | Q774K | Caa | Aaa | 9 | 9 | AY.3.1 | 0.000767 |
ORF1ab/nsp3 | 774 | Q774K | Caa | Aaa | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 9 | 9 | AY.47 | 0.00028 |
ORF1ab/nsp3 | 774 | Q774H | caA | caC | 6 | 9 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 774 | Q774H | caA | caT | 3 | 9 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 774 | Q774P | cAa | cCa | 7 | 8 | All | 0.000001 |
ORF1ab/nsp3 | 774 | Q774P | cAA | cCC | 1 | 8 | All | 0 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 7 | 7 | AY.6 | 0.000288 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 7 | 7 | B.1.258 | 0.000466 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 6 | 6 | AY.118 | 0.000376 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp3 | 774 | Q774H | caA | caC | 6 | 6 | B.1.160 | 0.000187 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 6 | 6 | B.1.597 | 0.027778 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 5 | 5 | A.2.3 | 0.023697 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 5 | 5 | AY.121 | 0.000677 |
ORF1ab/nsp3 | 774 | Q774K | Caa | Aaa | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp3 | 774 | Q774X | Caa | Taa | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 774 | Q774K | Caa | Aaa | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 5 | 5 | B.1.478 | 0.058824 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 5 | 5 | B.1.617.1 | 0.000645 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 774 | Q774H | caA | caC | 3 | 4 | B.1.36.29 | 0.001552 |
ORF1ab/nsp3 | 774 | Q774H | caA | caT | 1 | 4 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp3 | 774 | Q774del1 | Caa | -aa | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 774 | Q774del1 | CAa | T-a | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 774 | Q774del1 | caA | ca- | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 2 | 3 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 774 | Q774R | cAA | cGG | 1 | 3 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 774 | Q774K | Caa | Aaa | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp3 | 774 | Q774K | Caa | Aaa | 3 | 3 | B.1.1.326 | 0.005282 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 3 | 3 | B.1.1.50 | 0.002037 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 3 | 3 | B.1.177.73 | 0.001699 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 774 | Q774P | cAa | cCa | 3 | 3 | B.1.362 | 0.004622 |
ORF1ab/nsp3 | 774 | Q774H | caA | caC | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 774 | Q774H | caA | caC | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 774 | Q774K | Caa | Aaa | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 774 | Q774L | cAa | cTa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 2 | 2 | B.1.1.486 | 0.003155 |
ORF1ab/nsp3 | 774 | Q774K | Caa | Aaa | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 774 | Q774K | Caa | Aaa | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp3 | 774 | Q774H | caA | caC | 2 | 2 | B.1.453 | 0.006472 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 774 | Q774del1 | caA | ca- | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 774 | Q774del1 | CAa | T-a | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 774 | Q774P | cAa | cCa | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 774 | Q774H | caA | caC | 1 | 1 | A.6 | 0.005128 |
ORF1ab/nsp3 | 774 | Q774H | caA | caT | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp3 | 774 | Q774G | CAA | GGT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 774 | Q774T | CAa | ACa | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 774 | Q774E | Caa | Gaa | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 774 | Q774D | CaA | GaC | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 774 | Q774L | cAa | cTa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 774 | Q774K | Caa | Aaa | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 774 | Q774H | caA | caC | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 774 | Q774K | Caa | Aaa | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 774 | Q774H | caA | caC | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 774 | Q774H | caA | caT | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 774 | Q774L | cAa | cTa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 774 | Q774X | Caa | Taa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 774 | Q774L | cAa | cTa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 774 | Q774del1 | Caa | -aa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 774 | Q774K | Caa | Aaa | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 774 | Q774H | caA | caC | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 774 | Q774H | caA | caC | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 774 | Q774L | cAa | cTa | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 774 | Q774H | caA | caC | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 774 | Q774H | caA | caT | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 774 | Q774T | CAa | ACa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 774 | Q774K | Caa | Aaa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 774 | Q774P | cAa | cCa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 1 | 1 | B.1.1.218 | 0.007692 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 1 | 1 | B.1.1.340 | 0.045455 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 1 | 1 | B.1.1.524 | 0.020833 |
ORF1ab/nsp3 | 774 | Q774P | cAA | cCC | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 774 | Q774D | CaA | GaC | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 774 | Q774G | CAA | GGT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp3 | 774 | Q774P | cAa | cCa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 774 | Q774X | Caa | Taa | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 1 | 1 | B.1.293 | 0.0125 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 774 | Q774X | Caa | Taa | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 774 | Q774K | Caa | Aaa | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 774 | Q774R | cAa | cGa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 774 | Q774L | cAa | cTa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 774 | Q774P | cAa | cCa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 774 | Q774K | Caa | Aaa | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 774 | Q774K | Caa | Aaa | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 774 | Q774X | Caa | Taa | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp3 | 774 | Q774Q | caA | caG | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 774 | Q774H | caA | caC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 774 | Q774L | cAa | cTa | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 774 | Q774H | caA | caC | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 774 | Q774E | Caa | Gaa | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 774 | Q774del | CAA | --- | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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