CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 774

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3774Q774QQ1592QsyncaAcaG113461134615039-5041
ORF1ab/nsp3774Q774RQ1592RnonsyncAacGa136813660.9985385039-5041
ORF1ab/nsp3774Q774RQ1592RnonsyncAAcGT136810.0007309945039-5041
ORF1ab/nsp3774Q774RQ1592RnonsyncAAcGG136810.0007309945039-5041
ORF1ab/nsp3774Q774delQ1592deldelCAA---939315039-5041
ORF1ab/nsp3774Q774KQ1592KnonsynCaaAaa868615039-5041
ORF1ab/nsp3774Q774LQ1592LnonsyncAacTa575715039-5041
ORF1ab/nsp3774Q774HQ1592HnonsyncaAcaC37300.8108115039-5041
ORF1ab/nsp3774Q774HQ1592HnonsyncaAcaT3770.1891895039-5041
ORF1ab/nsp3774Q774XQ1592XnonsynCaaTaa9915039-5041
ORF1ab/nsp3774Q774PQ1592PnonsyncAacCa870.8755039-5041
ORF1ab/nsp3774Q774PQ1592PnonsyncAAcCC810.1255039-5041
ORF1ab/nsp3774Q774del1Q1592del1delCAaT-a310.3333335039-5041
ORF1ab/nsp3774Q774del1Q1592del1delCaa-aa310.3333335039-5041
ORF1ab/nsp3774Q774del1Q1592del1delcaAca-310.3333335039-5041
ORF1ab/nsp3774Q774GQ1592GnonsynCAAGGT1115039-5041
ORF1ab/nsp3774Q774TQ1592TnonsynCAaACa1115039-5041
ORF1ab/nsp3774Q774EQ1592EnonsynCaaGaa1115039-5041
ORF1ab/nsp3774Q774DQ1592DnonsynCaAGaC1115039-5041

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3774Q774QcaAcaG1134611346All0.00217
ORF1ab/nsp3774Q774QcaAcaG1107411074B.1.1.70.009914
ORF1ab/nsp3774Q774RcAacGa13661368All0.000261
ORF1ab/nsp3774Q774RcAAcGT11368All0
ORF1ab/nsp3774Q774RcAAcGG11368All0
ORF1ab/nsp3774Q774RcAacGa806806B.1.1.3160.745606
ORF1ab/nsp3774Q774RcAacGa156156B.1.6300.816754
ORF1ab/nsp3774Q774delCAA---9393All0.000018
ORF1ab/nsp3774Q774KCaaAaa8686All0.000016
ORF1ab/nsp3774Q774QcaAcaG7474B.1.6370.005407
ORF1ab/nsp3774Q774RcAacGa6868R.20.985507
ORF1ab/nsp3774Q774LcAacTa5757All0.000011
ORF1ab/nsp3774Q774QcaAcaG5454Q.80.008905
ORF1ab/nsp3774Q774RcAacGa4848B.1.10.000871
ORF1ab/nsp3774Q774RcAacGa4343B.10.000394
ORF1ab/nsp3774Q774HcaAcaC3037All0.000006
ORF1ab/nsp3774Q774HcaAcaT737All0.000001
ORF1ab/nsp3774Q774RcAacGa3636B.1.1.4081
ORF1ab/nsp3774Q774RcAacGa3434B.1.3930.971429
ORF1ab/nsp3774Q774delCAA---2929B.1.1.70.000026
ORF1ab/nsp3774Q774LcAacTa2525B.1.4270.001262
ORF1ab/nsp3774Q774LcAacTa2424B.1.1.70.000021
ORF1ab/nsp3774Q774QcaAcaG2323AY.840.010061
ORF1ab/nsp3774Q774RcAacGa1919B.1.1.4070.791667
ORF1ab/nsp3774Q774RcAacGa1819B.1.1.70.000016
ORF1ab/nsp3774Q774RcAAcGT119B.1.1.70.000001
ORF1ab/nsp3774Q774RcAacGa1717B.1.3780.116438
ORF1ab/nsp3774Q774KCaaAaa1616B.1.20.000141
ORF1ab/nsp3774Q774QcaAcaG1616B.1.3700.128
ORF1ab/nsp3774Q774delCAA---1515B.10.000137
ORF1ab/nsp3774Q774RcAacGa1414AY.250.000084
ORF1ab/nsp3774Q774KCaaAaa1313AY.470.000404
ORF1ab/nsp3774Q774RcAacGa1111B.1.1.2840.001181
ORF1ab/nsp3774Q774KCaaAaa1010B.1.617.20.000038
ORF1ab/nsp3774Q774XCaaTaa99All0.000002
ORF1ab/nsp3774Q774KCaaAaa99AY.3.10.000767
ORF1ab/nsp3774Q774KCaaAaa99AY.430.00004
ORF1ab/nsp3774Q774QcaAcaG99AY.470.00028
ORF1ab/nsp3774Q774HcaAcaC69B.1.1.70.000005
ORF1ab/nsp3774Q774HcaAcaT39B.1.1.70.000003
ORF1ab/nsp3774Q774PcAacCa78All0.000001
ORF1ab/nsp3774Q774PcAAcCC18All0
ORF1ab/nsp3774Q774QcaAcaG88B.10.000073
ORF1ab/nsp3774Q774QcaAcaG77AY.440.000043
ORF1ab/nsp3774Q774QcaAcaG77AY.60.000288
ORF1ab/nsp3774Q774RcAacGa77B.1.2580.000466
ORF1ab/nsp3774Q774RcAacGa77B.1.617.20.000026
ORF1ab/nsp3774Q774QcaAcaG66AY.1030.000037
ORF1ab/nsp3774Q774RcAacGa66AY.1180.000376
ORF1ab/nsp3774Q774QcaAcaG66AY.40.000009
ORF1ab/nsp3774Q774RcAacGa66AY.430.000027
ORF1ab/nsp3774Q774HcaAcaC66B.1.1600.000187
ORF1ab/nsp3774Q774RcAacGa66B.1.20.000053
ORF1ab/nsp3774Q774RcAacGa66B.1.5970.027778
ORF1ab/nsp3774Q774RcAacGa55A.2.30.023697
ORF1ab/nsp3774Q774QcaAcaG55AY.1210.000677
ORF1ab/nsp3774Q774KCaaAaa55AY.40.000008
ORF1ab/nsp3774Q774RcAacGa55AY.450.000608
ORF1ab/nsp3774Q774XCaaTaa55B.10.000046
ORF1ab/nsp3774Q774KCaaAaa55B.10.000046
ORF1ab/nsp3774Q774QcaAcaG55B.1.10.000091
ORF1ab/nsp3774Q774QcaAcaG55B.1.4780.058824
ORF1ab/nsp3774Q774delCAA---55B.1.617.10.000645
ORF1ab/nsp3774Q774QcaAcaG55P.10.000079
ORF1ab/nsp3774Q774delCAA---440.222222
ORF1ab/nsp3774Q774RcAacGa44AY.40.000006
ORF1ab/nsp3774Q774delCAA---44AY.430.000018
ORF1ab/nsp3774Q774HcaAcaC34B.1.36.290.001552
ORF1ab/nsp3774Q774HcaAcaT14B.1.36.290.000517
ORF1ab/nsp3774Q774QcaAcaG44Q.10.000505
ORF1ab/nsp3774Q774del1Caa-aa13All0
ORF1ab/nsp3774Q774del1CAaT-a13All0
ORF1ab/nsp3774Q774del1caAca-13All0
ORF1ab/nsp3774Q774QcaAcaG33AY.200.000117
ORF1ab/nsp3774Q774QcaAcaG33AY.250.000018
ORF1ab/nsp3774Q774RcAacGa23AY.440.000012
ORF1ab/nsp3774Q774RcAAcGG13AY.440.000006
ORF1ab/nsp3774Q774KCaaAaa33AY.60.000123
ORF1ab/nsp3774Q774RcAacGa33AY.610.000314
ORF1ab/nsp3774Q774RcAacGa33B.1.1.3180.000905
ORF1ab/nsp3774Q774KCaaAaa33B.1.1.3260.005282
ORF1ab/nsp3774Q774RcAacGa33B.1.1.500.002037
ORF1ab/nsp3774Q774QcaAcaG33B.1.177.730.001699
ORF1ab/nsp3774Q774QcaAcaG33B.1.20.000026
ORF1ab/nsp3774Q774PcAacCa33B.1.3620.004622
ORF1ab/nsp3774Q774HcaAcaC33B.1.617.20.000011
ORF1ab/nsp3774Q774RcAacGa33P.10.000047
ORF1ab/nsp3774Q774RcAacGa22AY.1130.000285
ORF1ab/nsp3774Q774HcaAcaC22AY.160.000759
ORF1ab/nsp3774Q774delCAA---22AY.250.000012
ORF1ab/nsp3774Q774KCaaAaa22AY.260.000057
ORF1ab/nsp3774Q774delCAA---22AY.40.000003
ORF1ab/nsp3774Q774LcAacTa22B.10.000018
ORF1ab/nsp3774Q774RcAacGa22B.1.1.3980.006452
ORF1ab/nsp3774Q774RcAacGa22B.1.1.4860.003155
ORF1ab/nsp3774Q774KCaaAaa22B.1.1.70.000002
ORF1ab/nsp3774Q774QcaAcaG22B.1.1600.000062
ORF1ab/nsp3774Q774KCaaAaa22B.1.1770.000026
ORF1ab/nsp3774Q774delCAA---22B.1.1770.000026
ORF1ab/nsp3774Q774delCAA---22B.1.360.000292
ORF1ab/nsp3774Q774RcAacGa22B.1.36.180.00084
ORF1ab/nsp3774Q774HcaAcaC22B.1.4530.006472
ORF1ab/nsp3774Q774QcaAcaG22B.1.617.20.000008
ORF1ab/nsp3774Q774delCAA---22B.1.617.20.000008
ORF1ab/nsp3774Q774del1caAca-12B.1.617.20.000004
ORF1ab/nsp3774Q774del1CAaT-a12B.1.617.20.000004
ORF1ab/nsp3774Q774QcaAcaG22Q.30.00029
ORF1ab/nsp3774Q774RcAacGa110.055556
ORF1ab/nsp3774Q774PcAacCa110.055556
ORF1ab/nsp3774Q774delCAA---11A.2.20.001689
ORF1ab/nsp3774Q774HcaAcaC11A.60.005128
ORF1ab/nsp3774Q774HcaAcaT11AH.30.003802
ORF1ab/nsp3774Q774GCAAGGT11All0
ORF1ab/nsp3774Q774TCAaACa11All0
ORF1ab/nsp3774Q774ECaaGaa11All0
ORF1ab/nsp3774Q774DCaAGaC11All0
ORF1ab/nsp3774Q774LcAacTa11AY.1030.000006
ORF1ab/nsp3774Q774RcAacGa11AY.1030.000006
ORF1ab/nsp3774Q774RcAacGa11AY.1090.00074
ORF1ab/nsp3774Q774QcaAcaG11AY.1130.000142
ORF1ab/nsp3774Q774delCAA---11AY.1190.000035
ORF1ab/nsp3774Q774KCaaAaa11AY.1200.000037
ORF1ab/nsp3774Q774QcaAcaG11AY.130.000161
ORF1ab/nsp3774Q774QcaAcaG11AY.16.10.00047
ORF1ab/nsp3774Q774QcaAcaG11AY.20.000356
ORF1ab/nsp3774Q774HcaAcaC11AY.250.000006
ORF1ab/nsp3774Q774RcAacGa11AY.260.000028
ORF1ab/nsp3774Q774KCaaAaa11AY.270.000065
ORF1ab/nsp3774Q774RcAacGa11AY.290.000016
ORF1ab/nsp3774Q774QcaAcaG11AY.30.00001
ORF1ab/nsp3774Q774HcaAcaC11AY.30.00001
ORF1ab/nsp3774Q774QcaAcaG11AY.3.10.000085
ORF1ab/nsp3774Q774RcAacGa11AY.340.000097
ORF1ab/nsp3774Q774HcaAcaT11AY.40.000002
ORF1ab/nsp3774Q774QcaAcaG11AY.4.20.000022
ORF1ab/nsp3774Q774delCAA---11AY.4.50.000107
ORF1ab/nsp3774Q774QcaAcaG11AY.410.000294
ORF1ab/nsp3774Q774LcAacTa11AY.430.000004
ORF1ab/nsp3774Q774QcaAcaG11AY.430.000004
ORF1ab/nsp3774Q774XCaaTaa11AY.440.000006
ORF1ab/nsp3774Q774LcAacTa11AY.440.000006
ORF1ab/nsp3774Q774del1Caa-aa11AY.440.000006
ORF1ab/nsp3774Q774QcaAcaG11AY.450.000122
ORF1ab/nsp3774Q774KCaaAaa11AY.460.000104
ORF1ab/nsp3774Q774HcaAcaC11AY.46.20.000635
ORF1ab/nsp3774Q774RcAacGa11AY.540.000095
ORF1ab/nsp3774Q774HcaAcaC11AY.550.000917
ORF1ab/nsp3774Q774LcAacTa11AY.550.000917
ORF1ab/nsp3774Q774RcAacGa11AY.590.00053
ORF1ab/nsp3774Q774delCAA---11AY.7.20.000559
ORF1ab/nsp3774Q774RcAacGa11AY.720.001361
ORF1ab/nsp3774Q774QcaAcaG11AY.750.000056
ORF1ab/nsp3774Q774delCAA---11AY.750.000056
ORF1ab/nsp3774Q774delCAA---11AY.75.10.00018
ORF1ab/nsp3774Q774RcAacGa11AY.90.000068
ORF1ab/nsp3774Q774RcAacGa11AY.9.20.000037
ORF1ab/nsp3774Q774HcaAcaC11AY.910.00073
ORF1ab/nsp3774Q774HcaAcaT11B.10.000009
ORF1ab/nsp3774Q774TCAaACa11B.1.10.000018
ORF1ab/nsp3774Q774delCAA---11B.1.10.000018
ORF1ab/nsp3774Q774KCaaAaa11B.1.10.000018
ORF1ab/nsp3774Q774PcAacCa11B.1.10.000018
ORF1ab/nsp3774Q774RcAacGa11B.1.1.10.000327
ORF1ab/nsp3774Q774RcAacGa11B.1.1.100.001115
ORF1ab/nsp3774Q774delCAA---11B.1.1.1390.022727
ORF1ab/nsp3774Q774delCAA---11B.1.1.1420.017544
ORF1ab/nsp3774Q774RcAacGa11B.1.1.1710.003676
ORF1ab/nsp3774Q774delCAA---11B.1.1.2180.007692
ORF1ab/nsp3774Q774delCAA---11B.1.1.3150.008475
ORF1ab/nsp3774Q774RcAacGa11B.1.1.3400.045455
ORF1ab/nsp3774Q774delCAA---11B.1.1.370.000193
ORF1ab/nsp3774Q774delCAA---11B.1.1.5190.00004
ORF1ab/nsp3774Q774QcaAcaG11B.1.1.5240.020833
ORF1ab/nsp3774Q774PcAAcCC11B.1.1.70.000001
ORF1ab/nsp3774Q774DCaAGaC11B.1.1.70.000001
ORF1ab/nsp3774Q774GCAAGGT11B.1.1.70.000001
ORF1ab/nsp3774Q774delCAA---11B.1.1400.018868
ORF1ab/nsp3774Q774PcAacCa11B.1.1770.000013
ORF1ab/nsp3774Q774RcAacGa11B.1.1770.000013
ORF1ab/nsp3774Q774QcaAcaG11B.1.1770.000013
ORF1ab/nsp3774Q774QcaAcaG11B.1.177.40.000211
ORF1ab/nsp3774Q774delCAA---11B.1.177.620.001192
ORF1ab/nsp3774Q774delCAA---11B.1.177.680.015152
ORF1ab/nsp3774Q774QcaAcaG11B.1.2210.000071
ORF1ab/nsp3774Q774XCaaTaa11B.1.221.10.002907
ORF1ab/nsp3774Q774RcAacGa11B.1.2410.000812
ORF1ab/nsp3774Q774RcAacGa11B.1.2930.0125
ORF1ab/nsp3774Q774delCAA---11B.1.3190.003049
ORF1ab/nsp3774Q774QcaAcaG11B.1.3510.00003
ORF1ab/nsp3774Q774delCAA---11B.1.3750.00082
ORF1ab/nsp3774Q774delCAA---11B.1.4150.014286
ORF1ab/nsp3774Q774delCAA---11B.1.416.10.001563
ORF1ab/nsp3774Q774RcAacGa11B.1.4270.00005
ORF1ab/nsp3774Q774XCaaTaa11B.1.4270.00005
ORF1ab/nsp3774Q774RcAacGa11B.1.5170.000427
ORF1ab/nsp3774Q774RcAacGa11B.1.5250.000113
ORF1ab/nsp3774Q774KCaaAaa11B.1.5460.003704
ORF1ab/nsp3774Q774delCAA---11B.1.5600.00463
ORF1ab/nsp3774Q774delCAA---11B.1.5760.000907
ORF1ab/nsp3774Q774RcAacGa11B.1.5960.000087
ORF1ab/nsp3774Q774LcAacTa11B.1.5960.000087
ORF1ab/nsp3774Q774QcaAcaG11B.1.617.10.000129
ORF1ab/nsp3774Q774PcAacCa11B.1.617.20.000004
ORF1ab/nsp3774Q774QcaAcaG11B.1.6190.000871
ORF1ab/nsp3774Q774QcaAcaG11B.1.6210.000089
ORF1ab/nsp3774Q774delCAA---11B.1.6210.000089
ORF1ab/nsp3774Q774KCaaAaa11B.1.930.000934
ORF1ab/nsp3774Q774delCAA---11B.150.017544
ORF1ab/nsp3774Q774KCaaAaa11B.550.00295
ORF1ab/nsp3774Q774delCAA---11C.370.000116
ORF1ab/nsp3774Q774XCaaTaa11C.37.10.002618
ORF1ab/nsp3774Q774QcaAcaG11D.20.000075
ORF1ab/nsp3774Q774HcaAcaC11D.20.000075
ORF1ab/nsp3774Q774LcAacTa11P.10.000016
ORF1ab/nsp3774Q774HcaAcaC11P.1.140.000048
ORF1ab/nsp3774Q774ECaaGaa11Q.10.000126
ORF1ab/nsp3774Q774delCAA---11Q.80.000165