CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 764

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3764Q764HQ1582HnonsyncaAcaC383738150.9942665009-5011
ORF1ab/nsp3764Q764HQ1582HnonsyncaAcaT3837220.005733655009-5011
ORF1ab/nsp3764Q764RQ1582RnonsyncAacGa2742730.996355009-5011
ORF1ab/nsp3764Q764RQ1582RnonsyncAAcGG27410.003649645009-5011
ORF1ab/nsp3764Q764LQ1582LnonsyncAacTa16216215009-5011
ORF1ab/nsp3764Q764QQ1582QsyncaAcaG16016015009-5011
ORF1ab/nsp3764Q764KQ1582KnonsynCaaAaa10410415009-5011
ORF1ab/nsp3764Q764delQ1582deldelCAA---808015009-5011
ORF1ab/nsp3764Q764XQ1582XnonsynCaaTaa464615009-5011
ORF1ab/nsp3764Q764YQ1582YnonsynCaATaC1090.95009-5011
ORF1ab/nsp3764Q764YQ1582YnonsynCaATaT1010.15009-5011
ORF1ab/nsp3764Q764PQ1582PnonsyncAacCa4415009-5011
ORF1ab/nsp3764Q764EQ1582EnonsynCaaGaa4415009-5011
ORF1ab/nsp3764Q764del1Q1582del1delCAATG-410.255009-5011
ORF1ab/nsp3764Q764del1Q1582del1delcaAca-410.255009-5011
ORF1ab/nsp3764Q764del1Q1582del1delCaa-aa410.255009-5011
ORF1ab/nsp3764Q764del1Q1582del1delcAac-a410.255009-5011
ORF1ab/nsp3764Q764del2Q1582del2delCAAT--210.55009-5011
ORF1ab/nsp3764Q764del2Q1582del2delcAAc--210.55009-5011
ORF1ab/nsp3764Q764GQ1582GnonsynCAAGGG1115009-5011

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3764Q764HcaAcaC38153837All0.00073
ORF1ab/nsp3764Q764HcaAcaT223837All0.000004
ORF1ab/nsp3764Q764HcaAcaC33133315B.1.3110.909665
ORF1ab/nsp3764Q764HcaAcaT23315B.1.3110.000549
ORF1ab/nsp3764Q764RcAacGa273274All0.000052
ORF1ab/nsp3764Q764RcAAcGG1274All0
ORF1ab/nsp3764Q764HcaAcaC209210B.10.001914
ORF1ab/nsp3764Q764HcaAcaT1210B.10.000009
ORF1ab/nsp3764Q764LcAacTa162162All0.000031
ORF1ab/nsp3764Q764QcaAcaG160160All0.000031
ORF1ab/nsp3764Q764RcAacGa125125AY.40.000195
ORF1ab/nsp3764Q764KCaaAaa104104All0.00002
ORF1ab/nsp3764Q764HcaAcaC9494B.1.1190.989474
ORF1ab/nsp3764Q764delCAA---8080All0.000015
ORF1ab/nsp3764Q764LcAacTa6868AY.440.000414
ORF1ab/nsp3764Q764QcaAcaG5959B.1.1.70.000053
ORF1ab/nsp3764Q764HcaAcaC5757B.1.4440.904762
ORF1ab/nsp3764Q764KCaaAaa5151AY.250.000307
ORF1ab/nsp3764Q764XCaaTaa4646All0.000009
ORF1ab/nsp3764Q764RcAacGa3434B.1.1.70.00003
ORF1ab/nsp3764Q764RcAacGa2929AY.440.000177
ORF1ab/nsp3764Q764LcAacTa2424AY.1030.000149
ORF1ab/nsp3764Q764delCAA---2424B.1.1.70.000021
ORF1ab/nsp3764Q764QcaAcaG2121B.1.617.20.000079
ORF1ab/nsp3764Q764HcaAcaC1220AY.40.000019
ORF1ab/nsp3764Q764HcaAcaT820AY.40.000012
ORF1ab/nsp3764Q764KCaaAaa1919AY.10.007519
ORF1ab/nsp3764Q764QcaAcaG1818B.1.1.2140.000998
ORF1ab/nsp3764Q764HcaAcaC1516B.1.20.000132
ORF1ab/nsp3764Q764HcaAcaT116B.1.20.000009
ORF1ab/nsp3764Q764HcaAcaC1215B.1.1.70.000011
ORF1ab/nsp3764Q764HcaAcaT315B.1.1.70.000003
ORF1ab/nsp3764Q764LcAacTa1414B.1.10.000254
ORF1ab/nsp3764Q764RcAacGa1313B.1.2320.006985
ORF1ab/nsp3764Q764delCAA---1212B.10.00011
ORF1ab/nsp3764Q764QcaAcaG1111AY.850.004699
ORF1ab/nsp3764Q764XCaaTaa1111B.1.1.70.00001
ORF1ab/nsp3764Q764RcAacGa1111B.1.617.20.000041
ORF1ab/nsp3764Q764YCaATaC910All0.000002
ORF1ab/nsp3764Q764YCaATaT110All0
ORF1ab/nsp3764Q764QcaAcaG1010AY.40.000016
ORF1ab/nsp3764Q764XCaaTaa1010B.10.000092
ORF1ab/nsp3764Q764YCaATaC910B.1.3110.002471
ORF1ab/nsp3764Q764YCaATaT110B.1.3110.000275
ORF1ab/nsp3764Q764KCaaAaa99AY.40.000014
ORF1ab/nsp3764Q764LcAacTa99AY.570.005906
ORF1ab/nsp3764Q764HcaAcaC99B.1.5170.003843
ORF1ab/nsp3764Q764HcaAcaC88B.1.177.810.001515
ORF1ab/nsp3764Q764HcaAcaC88B.1.5960.000697
ORF1ab/nsp3764Q764RcAacGa67B.10.000055
ORF1ab/nsp3764Q764RcAAcGG17B.10.000009
ORF1ab/nsp3764Q764RcAacGa66AY.1180.000376
ORF1ab/nsp3764Q764HcaAcaC56AY.30.00005
ORF1ab/nsp3764Q764HcaAcaT16AY.30.00001
ORF1ab/nsp3764Q764QcaAcaG66AY.4.20.00013
ORF1ab/nsp3764Q764HcaAcaC66AY.420.000241
ORF1ab/nsp3764Q764HcaAcaC66B.1.177.730.003398
ORF1ab/nsp3764Q764LcAacTa66B.1.20.000053
ORF1ab/nsp3764Q764LcAacTa55AY.40.000008
ORF1ab/nsp3764Q764HcaAcaT55AY.440.00003
ORF1ab/nsp3764Q764QcaAcaG55B.10.000046
ORF1ab/nsp3764Q764HcaAcaC55B.1.10.000091
ORF1ab/nsp3764Q764RcAacGa55B.1.2580.000333
ORF1ab/nsp3764Q764LcAacTa55P.10.000079
ORF1ab/nsp3764Q764PcAacCa44All0.000001
ORF1ab/nsp3764Q764ECaaGaa44All0.000001
ORF1ab/nsp3764Q764del1CAATG-14All0
ORF1ab/nsp3764Q764del1caAca-14All0
ORF1ab/nsp3764Q764del1Caa-aa14All0
ORF1ab/nsp3764Q764del1cAac-a14All0
ORF1ab/nsp3764Q764KCaaAaa44AY.4.50.00043
ORF1ab/nsp3764Q764RcAacGa44AY.420.000161
ORF1ab/nsp3764Q764HcaAcaC44AY.430.000018
ORF1ab/nsp3764Q764delCAA---44B.1.10.000073
ORF1ab/nsp3764Q764KCaaAaa44B.1.1.4330.005698
ORF1ab/nsp3764Q764KCaaAaa44B.1.1.70.000004
ORF1ab/nsp3764Q764LcAacTa44B.1.1.70.000004
ORF1ab/nsp3764Q764delCAA---44B.1.1770.000053
ORF1ab/nsp3764Q764RcAacGa44B.1.177.790.009368
ORF1ab/nsp3764Q764HcaAcaC44B.1.3490.002859
ORF1ab/nsp3764Q764HcaAcaC33AY.100.00159
ORF1ab/nsp3764Q764LcAacTa33AY.200.000117
ORF1ab/nsp3764Q764RcAacGa33AY.30.00003
ORF1ab/nsp3764Q764LcAacTa33AY.340.000291
ORF1ab/nsp3764Q764XCaaTaa33AY.40.000005
ORF1ab/nsp3764Q764LcAacTa33AY.4.20.000065
ORF1ab/nsp3764Q764QcaAcaG33AY.430.000013
ORF1ab/nsp3764Q764QcaAcaG33AY.440.000018
ORF1ab/nsp3764Q764RcAacGa33B.1.1.3110.001074
ORF1ab/nsp3764Q764RcAacGa33B.1.1770.00004
ORF1ab/nsp3764Q764ECaaGaa33B.1.3510.000089
ORF1ab/nsp3764Q764HcaAcaC33B.1.4000.001287
ORF1ab/nsp3764Q764HcaAcaC33B.1.4280.003061
ORF1ab/nsp3764Q764XCaaTaa33D.20.000225
ORF1ab/nsp3764Q764delCAA---220.111111
ORF1ab/nsp3764Q764QcaAcaG22A.10.000564
ORF1ab/nsp3764Q764del2CAAT--12All0
ORF1ab/nsp3764Q764del2cAAc--12All0
ORF1ab/nsp3764Q764KCaaAaa22AY.1030.000012
ORF1ab/nsp3764Q764HcaAcaC22AY.250.000012
ORF1ab/nsp3764Q764delCAA---22AY.250.000012
ORF1ab/nsp3764Q764QcaAcaG22AY.390.000049
ORF1ab/nsp3764Q764KCaaAaa22AY.390.000049
ORF1ab/nsp3764Q764delCAA---22AY.40.000003
ORF1ab/nsp3764Q764XCaaTaa22AY.440.000012
ORF1ab/nsp3764Q764KCaaAaa22AY.440.000012
ORF1ab/nsp3764Q764HcaAcaC22AY.750.000112
ORF1ab/nsp3764Q764RcAacGa22AY.90.000135
ORF1ab/nsp3764Q764HcaAcaC22AY.9.20.000073
ORF1ab/nsp3764Q764HcaAcaC22B0.000256
ORF1ab/nsp3764Q764XCaaTaa22B0.000256
ORF1ab/nsp3764Q764KCaaAaa22B.10.000018
ORF1ab/nsp3764Q764LcAacTa22B.10.000018
ORF1ab/nsp3764Q764HcaAcaC22B.1.1.480.005747
ORF1ab/nsp3764Q764QcaAcaG22B.1.1770.000026
ORF1ab/nsp3764Q764QcaAcaG22B.1.20.000018
ORF1ab/nsp3764Q764LcAacTa22B.1.2430.000139
ORF1ab/nsp3764Q764HcaAcaC22B.1.3240.00321
ORF1ab/nsp3764Q764delCAA---22B.1.360.000292
ORF1ab/nsp3764Q764QcaAcaG22B.1.4290.000047
ORF1ab/nsp3764Q764HcaAcaC22B.1.5950.000522
ORF1ab/nsp3764Q764RcAacGa22B.1.5960.000174
ORF1ab/nsp3764Q764LcAacTa22B.1.617.20.000008
ORF1ab/nsp3764Q764delCAA---22B.1.617.20.000008
ORF1ab/nsp3764Q764KCaaAaa22B.1.617.20.000008
ORF1ab/nsp3764Q764QcaAcaG22D.20.00015
ORF1ab/nsp3764Q764RcAacGa22P.10.000032
ORF1ab/nsp3764Q764LcAacTa22P.1.20.002312
ORF1ab/nsp3764Q764QcaAcaG22P.30.00319
ORF1ab/nsp3764Q764delCAA---11A0.000387
ORF1ab/nsp3764Q764delCAA---11A.2.20.001689
ORF1ab/nsp3764Q764QcaAcaG11A.2.40.003367
ORF1ab/nsp3764Q764HcaAcaC11A.2.40.003367
ORF1ab/nsp3764Q764RcAacGa11AE.80.000489
ORF1ab/nsp3764Q764GCAAGGG11All0
ORF1ab/nsp3764Q764LcAacTa11AY.1020.000027
ORF1ab/nsp3764Q764RcAacGa11AY.1030.000006
ORF1ab/nsp3764Q764delCAA---11AY.1110.000183
ORF1ab/nsp3764Q764RcAacGa11AY.230.00007
ORF1ab/nsp3764Q764XCaaTaa11AY.250.000006
ORF1ab/nsp3764Q764QcaAcaG11AY.250.000006
ORF1ab/nsp3764Q764QcaAcaG11AY.290.000016
ORF1ab/nsp3764Q764LcAacTa11AY.290.000016
ORF1ab/nsp3764Q764RcAacGa11AY.290.000016
ORF1ab/nsp3764Q764LcAacTa11AY.30.00001
ORF1ab/nsp3764Q764del2cAAc--11AY.30.00001
ORF1ab/nsp3764Q764HcaAcaT11AY.370.000316
ORF1ab/nsp3764Q764LcAacTa11AY.390.000025
ORF1ab/nsp3764Q764XCaaTaa11AY.390.000025
ORF1ab/nsp3764Q764RcAacGa11AY.39.10.00004
ORF1ab/nsp3764Q764delCAA---11AY.4.50.000107
ORF1ab/nsp3764Q764HcaAcaC11AY.4.50.000107
ORF1ab/nsp3764Q764KCaaAaa11AY.420.00004
ORF1ab/nsp3764Q764delCAA---11AY.430.000004
ORF1ab/nsp3764Q764RcAacGa11AY.430.000004
ORF1ab/nsp3764Q764PcAacCa11AY.440.000006
ORF1ab/nsp3764Q764HcaAcaC11AY.460.000104
ORF1ab/nsp3764Q764LcAacTa11AY.460.000104
ORF1ab/nsp3764Q764HcaAcaC11AY.46.50.000198
ORF1ab/nsp3764Q764XCaaTaa11AY.46.60.000072
ORF1ab/nsp3764Q764HcaAcaC11AY.470.000031
ORF1ab/nsp3764Q764LcAacTa11AY.470.000031
ORF1ab/nsp3764Q764RcAacGa11AY.470.000031
ORF1ab/nsp3764Q764RcAacGa11AY.60.000041
ORF1ab/nsp3764Q764QcaAcaG11AY.600.000938
ORF1ab/nsp3764Q764LcAacTa11AY.670.000464
ORF1ab/nsp3764Q764RcAacGa11AY.750.000056
ORF1ab/nsp3764Q764delCAA---11AY.75.10.00018
ORF1ab/nsp3764Q764del1Caa-aa11AY.90.000068
ORF1ab/nsp3764Q764RcAacGa11AY.9.20.000037
ORF1ab/nsp3764Q764KCaaAaa11AY.9.20.000037
ORF1ab/nsp3764Q764LcAacTa11AY.960.002075
ORF1ab/nsp3764Q764delCAA---11AY.99.10.001553
ORF1ab/nsp3764Q764GCAAGGG11B0.000128
ORF1ab/nsp3764Q764QcaAcaG11B.1.10.000018
ORF1ab/nsp3764Q764KCaaAaa11B.1.10.000018
ORF1ab/nsp3764Q764RcAacGa11B.1.10.000018
ORF1ab/nsp3764Q764delCAA---11B.1.1.1390.022727
ORF1ab/nsp3764Q764RcAacGa11B.1.1.140.017241
ORF1ab/nsp3764Q764delCAA---11B.1.1.1420.017544
ORF1ab/nsp3764Q764XCaaTaa11B.1.1.1740.003378
ORF1ab/nsp3764Q764delCAA---11B.1.1.2180.007692
ORF1ab/nsp3764Q764delCAA---11B.1.1.3150.008475
ORF1ab/nsp3764Q764delCAA---11B.1.1.370.000193
ORF1ab/nsp3764Q764HcaAcaC11B.1.1.4160.000905
ORF1ab/nsp3764Q764HcaAcaC11B.1.1.4500.034483
ORF1ab/nsp3764Q764QcaAcaG11B.1.1.4860.001577
ORF1ab/nsp3764Q764delCAA---11B.1.1.700.000341
ORF1ab/nsp3764Q764delCAA---11B.1.1400.018868
ORF1ab/nsp3764Q764HcaAcaC11B.1.1770.000013
ORF1ab/nsp3764Q764XCaaTaa11B.1.1770.000013
ORF1ab/nsp3764Q764RcAacGa11B.1.177.210.000076
ORF1ab/nsp3764Q764delCAA---11B.1.177.540.000606
ORF1ab/nsp3764Q764RcAacGa11B.1.177.600.000218
ORF1ab/nsp3764Q764delCAA---11B.1.177.620.001192
ORF1ab/nsp3764Q764delCAA---11B.1.177.630.002703
ORF1ab/nsp3764Q764HcaAcaC11B.1.177.650.000665
ORF1ab/nsp3764Q764delCAA---11B.1.177.680.015152
ORF1ab/nsp3764Q764RcAacGa11B.1.20.000009
ORF1ab/nsp3764Q764del1CAATG-11B.1.20.000009
ORF1ab/nsp3764Q764PcAacCa11B.1.20.000009
ORF1ab/nsp3764Q764XCaaTaa11B.1.20.000009
ORF1ab/nsp3764Q764HcaAcaC11B.1.2060.000816
ORF1ab/nsp3764Q764XCaaTaa11B.1.2060.000816
ORF1ab/nsp3764Q764HcaAcaC11B.1.2340.000132
ORF1ab/nsp3764Q764HcaAcaC11B.1.2410.000812
ORF1ab/nsp3764Q764XCaaTaa11B.1.2430.00007
ORF1ab/nsp3764Q764RcAacGa11B.1.2430.00007
ORF1ab/nsp3764Q764HcaAcaC11B.1.2650.001271
ORF1ab/nsp3764Q764del1cAac-a11B.1.2650.001271
ORF1ab/nsp3764Q764HcaAcaC11B.1.2930.0125
ORF1ab/nsp3764Q764QcaAcaG11B.1.3110.000275
ORF1ab/nsp3764Q764delCAA---11B.1.3190.003049
ORF1ab/nsp3764Q764LcAacTa11B.1.3510.00003
ORF1ab/nsp3764Q764RcAacGa11B.1.36.160.001425
ORF1ab/nsp3764Q764delCAA---11B.1.36.180.00042
ORF1ab/nsp3764Q764QcaAcaG11B.1.36.180.00042
ORF1ab/nsp3764Q764XCaaTaa11B.1.3750.00082
ORF1ab/nsp3764Q764XCaaTaa11B.1.3960.000706
ORF1ab/nsp3764Q764delCAA---11B.1.4090.000781
ORF1ab/nsp3764Q764delCAA---11B.1.4150.014286
ORF1ab/nsp3764Q764HcaAcaC11B.1.4270.00005
ORF1ab/nsp3764Q764PcAacCa11B.1.4290.000024
ORF1ab/nsp3764Q764HcaAcaC11B.1.4290.000024
ORF1ab/nsp3764Q764HcaAcaC11B.1.4530.003236
ORF1ab/nsp3764Q764RcAacGa11B.1.466.20.000391
ORF1ab/nsp3764Q764XCaaTaa11B.1.5260.000024
ORF1ab/nsp3764Q764HcaAcaC11B.1.5580.004566
ORF1ab/nsp3764Q764XCaaTaa11B.1.5730.006098
ORF1ab/nsp3764Q764HcaAcaC11B.1.5820.000491
ORF1ab/nsp3764Q764XCaaTaa11B.1.5820.000491
ORF1ab/nsp3764Q764delCAA---11B.1.5960.000087
ORF1ab/nsp3764Q764RcAacGa11B.1.6000.005848
ORF1ab/nsp3764Q764HcaAcaC11B.1.6020.006536
ORF1ab/nsp3764Q764XCaaTaa11B.1.6060.006024
ORF1ab/nsp3764Q764HcaAcaC11B.1.6090.000479
ORF1ab/nsp3764Q764RcAacGa11B.1.6090.000479
ORF1ab/nsp3764Q764HcaAcaC11B.1.6120.002653
ORF1ab/nsp3764Q764delCAA---11B.1.617.10.000129
ORF1ab/nsp3764Q764QcaAcaG11B.1.617.10.000129
ORF1ab/nsp3764Q764HcaAcaC11B.1.617.20.000004
ORF1ab/nsp3764Q764ECaaGaa11B.1.617.20.000004
ORF1ab/nsp3764Q764XCaaTaa11B.1.617.20.000004
ORF1ab/nsp3764Q764del2CAAT--11B.1.617.20.000004
ORF1ab/nsp3764Q764del1caAca-11B.1.6210.000089
ORF1ab/nsp3764Q764RcAacGa11B.1.6370.000073
ORF1ab/nsp3764Q764delCAA---11B.150.017544
ORF1ab/nsp3764Q764delCAA---11C.370.000116
ORF1ab/nsp3764Q764LcAacTa11D.20.000075
ORF1ab/nsp3764Q764PcAacCa11P.10.000016
ORF1ab/nsp3764Q764QcaAcaG11Q.10.000126
ORF1ab/nsp3764Q764HcaAcaC11Q.80.000165
ORF1ab/nsp3764Q764HcaAcaC11W.40.001351