CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 764 | Q764H | Q1582H | nonsyn | caA | caC | 3837 | 3815 | 0.994266 | 5009-5011 |
ORF1ab/nsp3 | 764 | Q764H | Q1582H | nonsyn | caA | caT | 3837 | 22 | 0.00573365 | 5009-5011 |
ORF1ab/nsp3 | 764 | Q764R | Q1582R | nonsyn | cAa | cGa | 274 | 273 | 0.99635 | 5009-5011 |
ORF1ab/nsp3 | 764 | Q764R | Q1582R | nonsyn | cAA | cGG | 274 | 1 | 0.00364964 | 5009-5011 |
ORF1ab/nsp3 | 764 | Q764L | Q1582L | nonsyn | cAa | cTa | 162 | 162 | 1 | 5009-5011 |
ORF1ab/nsp3 | 764 | Q764Q | Q1582Q | syn | caA | caG | 160 | 160 | 1 | 5009-5011 |
ORF1ab/nsp3 | 764 | Q764K | Q1582K | nonsyn | Caa | Aaa | 104 | 104 | 1 | 5009-5011 |
ORF1ab/nsp3 | 764 | Q764del | Q1582del | del | CAA | --- | 80 | 80 | 1 | 5009-5011 |
ORF1ab/nsp3 | 764 | Q764X | Q1582X | nonsyn | Caa | Taa | 46 | 46 | 1 | 5009-5011 |
ORF1ab/nsp3 | 764 | Q764Y | Q1582Y | nonsyn | CaA | TaC | 10 | 9 | 0.9 | 5009-5011 |
ORF1ab/nsp3 | 764 | Q764Y | Q1582Y | nonsyn | CaA | TaT | 10 | 1 | 0.1 | 5009-5011 |
ORF1ab/nsp3 | 764 | Q764P | Q1582P | nonsyn | cAa | cCa | 4 | 4 | 1 | 5009-5011 |
ORF1ab/nsp3 | 764 | Q764E | Q1582E | nonsyn | Caa | Gaa | 4 | 4 | 1 | 5009-5011 |
ORF1ab/nsp3 | 764 | Q764del1 | Q1582del1 | del | CAA | TG- | 4 | 1 | 0.25 | 5009-5011 |
ORF1ab/nsp3 | 764 | Q764del1 | Q1582del1 | del | caA | ca- | 4 | 1 | 0.25 | 5009-5011 |
ORF1ab/nsp3 | 764 | Q764del1 | Q1582del1 | del | Caa | -aa | 4 | 1 | 0.25 | 5009-5011 |
ORF1ab/nsp3 | 764 | Q764del1 | Q1582del1 | del | cAa | c-a | 4 | 1 | 0.25 | 5009-5011 |
ORF1ab/nsp3 | 764 | Q764del2 | Q1582del2 | del | CAA | T-- | 2 | 1 | 0.5 | 5009-5011 |
ORF1ab/nsp3 | 764 | Q764del2 | Q1582del2 | del | cAA | c-- | 2 | 1 | 0.5 | 5009-5011 |
ORF1ab/nsp3 | 764 | Q764G | Q1582G | nonsyn | CAA | GGG | 1 | 1 | 1 | 5009-5011 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 3815 | 3837 | All | 0.00073 |
ORF1ab/nsp3 | 764 | Q764H | caA | caT | 22 | 3837 | All | 0.000004 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 3313 | 3315 | B.1.311 | 0.909665 |
ORF1ab/nsp3 | 764 | Q764H | caA | caT | 2 | 3315 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 273 | 274 | All | 0.000052 |
ORF1ab/nsp3 | 764 | Q764R | cAA | cGG | 1 | 274 | All | 0 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 209 | 210 | B.1 | 0.001914 |
ORF1ab/nsp3 | 764 | Q764H | caA | caT | 1 | 210 | B.1 | 0.000009 |
ORF1ab/nsp3 | 764 | Q764L | cAa | cTa | 162 | 162 | All | 0.000031 |
ORF1ab/nsp3 | 764 | Q764Q | caA | caG | 160 | 160 | All | 0.000031 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 125 | 125 | AY.4 | 0.000195 |
ORF1ab/nsp3 | 764 | Q764K | Caa | Aaa | 104 | 104 | All | 0.00002 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 94 | 94 | B.1.119 | 0.989474 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 80 | 80 | All | 0.000015 |
ORF1ab/nsp3 | 764 | Q764L | cAa | cTa | 68 | 68 | AY.44 | 0.000414 |
ORF1ab/nsp3 | 764 | Q764Q | caA | caG | 59 | 59 | B.1.1.7 | 0.000053 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 57 | 57 | B.1.444 | 0.904762 |
ORF1ab/nsp3 | 764 | Q764K | Caa | Aaa | 51 | 51 | AY.25 | 0.000307 |
ORF1ab/nsp3 | 764 | Q764X | Caa | Taa | 46 | 46 | All | 0.000009 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 34 | 34 | B.1.1.7 | 0.00003 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 29 | 29 | AY.44 | 0.000177 |
ORF1ab/nsp3 | 764 | Q764L | cAa | cTa | 24 | 24 | AY.103 | 0.000149 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 24 | 24 | B.1.1.7 | 0.000021 |
ORF1ab/nsp3 | 764 | Q764Q | caA | caG | 21 | 21 | B.1.617.2 | 0.000079 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 12 | 20 | AY.4 | 0.000019 |
ORF1ab/nsp3 | 764 | Q764H | caA | caT | 8 | 20 | AY.4 | 0.000012 |
ORF1ab/nsp3 | 764 | Q764K | Caa | Aaa | 19 | 19 | AY.1 | 0.007519 |
ORF1ab/nsp3 | 764 | Q764Q | caA | caG | 18 | 18 | B.1.1.214 | 0.000998 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 15 | 16 | B.1.2 | 0.000132 |
ORF1ab/nsp3 | 764 | Q764H | caA | caT | 1 | 16 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 12 | 15 | B.1.1.7 | 0.000011 |
ORF1ab/nsp3 | 764 | Q764H | caA | caT | 3 | 15 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 764 | Q764L | cAa | cTa | 14 | 14 | B.1.1 | 0.000254 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 13 | 13 | B.1.232 | 0.006985 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 12 | 12 | B.1 | 0.00011 |
ORF1ab/nsp3 | 764 | Q764Q | caA | caG | 11 | 11 | AY.85 | 0.004699 |
ORF1ab/nsp3 | 764 | Q764X | Caa | Taa | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 11 | 11 | B.1.617.2 | 0.000041 |
ORF1ab/nsp3 | 764 | Q764Y | CaA | TaC | 9 | 10 | All | 0.000002 |
ORF1ab/nsp3 | 764 | Q764Y | CaA | TaT | 1 | 10 | All | 0 |
ORF1ab/nsp3 | 764 | Q764Q | caA | caG | 10 | 10 | AY.4 | 0.000016 |
ORF1ab/nsp3 | 764 | Q764X | Caa | Taa | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp3 | 764 | Q764Y | CaA | TaC | 9 | 10 | B.1.311 | 0.002471 |
ORF1ab/nsp3 | 764 | Q764Y | CaA | TaT | 1 | 10 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 764 | Q764K | Caa | Aaa | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp3 | 764 | Q764L | cAa | cTa | 9 | 9 | AY.57 | 0.005906 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 9 | 9 | B.1.517 | 0.003843 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 8 | 8 | B.1.177.81 | 0.001515 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 8 | 8 | B.1.596 | 0.000697 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 6 | 7 | B.1 | 0.000055 |
ORF1ab/nsp3 | 764 | Q764R | cAA | cGG | 1 | 7 | B.1 | 0.000009 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 6 | 6 | AY.118 | 0.000376 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 5 | 6 | AY.3 | 0.00005 |
ORF1ab/nsp3 | 764 | Q764H | caA | caT | 1 | 6 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 764 | Q764Q | caA | caG | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 6 | 6 | B.1.177.73 | 0.003398 |
ORF1ab/nsp3 | 764 | Q764L | cAa | cTa | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp3 | 764 | Q764L | cAa | cTa | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 764 | Q764H | caA | caT | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp3 | 764 | Q764Q | caA | caG | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp3 | 764 | Q764L | cAa | cTa | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp3 | 764 | Q764P | cAa | cCa | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 764 | Q764E | Caa | Gaa | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 764 | Q764del1 | CAA | TG- | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 764 | Q764del1 | caA | ca- | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 764 | Q764del1 | Caa | -aa | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 764 | Q764del1 | cAa | c-a | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 764 | Q764K | Caa | Aaa | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 764 | Q764K | Caa | Aaa | 4 | 4 | B.1.1.433 | 0.005698 |
ORF1ab/nsp3 | 764 | Q764K | Caa | Aaa | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 764 | Q764L | cAa | cTa | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 4 | 4 | B.1.177.79 | 0.009368 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 4 | 4 | B.1.349 | 0.002859 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 3 | 3 | AY.10 | 0.00159 |
ORF1ab/nsp3 | 764 | Q764L | cAa | cTa | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 764 | Q764L | cAa | cTa | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp3 | 764 | Q764X | Caa | Taa | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 764 | Q764L | cAa | cTa | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 764 | Q764Q | caA | caG | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 764 | Q764Q | caA | caG | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 3 | 3 | B.1.1.311 | 0.001074 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 764 | Q764E | Caa | Gaa | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 3 | 3 | B.1.400 | 0.001287 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 3 | 3 | B.1.428 | 0.003061 |
ORF1ab/nsp3 | 764 | Q764X | Caa | Taa | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 764 | Q764Q | caA | caG | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp3 | 764 | Q764del2 | CAA | T-- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 764 | Q764del2 | cAA | c-- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 764 | Q764K | Caa | Aaa | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 764 | Q764Q | caA | caG | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 764 | Q764K | Caa | Aaa | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 764 | Q764X | Caa | Taa | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 764 | Q764K | Caa | Aaa | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 764 | Q764X | Caa | Taa | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 764 | Q764K | Caa | Aaa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 764 | Q764L | cAa | cTa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 2 | 2 | B.1.1.48 | 0.005747 |
ORF1ab/nsp3 | 764 | Q764Q | caA | caG | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 764 | Q764Q | caA | caG | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 764 | Q764L | cAa | cTa | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 2 | 2 | B.1.324 | 0.00321 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 764 | Q764Q | caA | caG | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 764 | Q764L | cAa | cTa | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 764 | Q764K | Caa | Aaa | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 764 | Q764Q | caA | caG | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 764 | Q764L | cAa | cTa | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp3 | 764 | Q764Q | caA | caG | 2 | 2 | P.3 | 0.00319 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 764 | Q764Q | caA | caG | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 764 | Q764G | CAA | GGG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 764 | Q764L | cAa | cTa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 764 | Q764X | Caa | Taa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 764 | Q764Q | caA | caG | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 764 | Q764Q | caA | caG | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 764 | Q764L | cAa | cTa | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 764 | Q764L | cAa | cTa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 764 | Q764del2 | cAA | c-- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 764 | Q764H | caA | caT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 764 | Q764L | cAa | cTa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 764 | Q764X | Caa | Taa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 764 | Q764K | Caa | Aaa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 764 | Q764P | cAa | cCa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 764 | Q764L | cAa | cTa | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 764 | Q764X | Caa | Taa | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 764 | Q764L | cAa | cTa | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 764 | Q764Q | caA | caG | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 764 | Q764L | cAa | cTa | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 764 | Q764del1 | Caa | -aa | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 764 | Q764K | Caa | Aaa | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 764 | Q764L | cAa | cTa | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 764 | Q764G | CAA | GGG | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 764 | Q764Q | caA | caG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 764 | Q764K | Caa | Aaa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 1 | 1 | B.1.1.14 | 0.017241 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 764 | Q764X | Caa | Taa | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 1 | 1 | B.1.1.218 | 0.007692 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 1 | 1 | B.1.1.450 | 0.034483 |
ORF1ab/nsp3 | 764 | Q764Q | caA | caG | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 764 | Q764X | Caa | Taa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 764 | Q764del1 | CAA | TG- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 764 | Q764P | cAa | cCa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 764 | Q764X | Caa | Taa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 764 | Q764X | Caa | Taa | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 764 | Q764X | Caa | Taa | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 764 | Q764del1 | cAa | c-a | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 1 | 1 | B.1.293 | 0.0125 |
ORF1ab/nsp3 | 764 | Q764Q | caA | caG | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 764 | Q764L | cAa | cTa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 764 | Q764Q | caA | caG | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 764 | Q764X | Caa | Taa | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 764 | Q764X | Caa | Taa | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 764 | Q764P | cAa | cCa | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 764 | Q764X | Caa | Taa | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp3 | 764 | Q764X | Caa | Taa | 1 | 1 | B.1.573 | 0.006098 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 764 | Q764X | Caa | Taa | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 1 | 1 | B.1.602 | 0.006536 |
ORF1ab/nsp3 | 764 | Q764X | Caa | Taa | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 764 | Q764Q | caA | caG | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 764 | Q764E | Caa | Gaa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 764 | Q764X | Caa | Taa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 764 | Q764del2 | CAA | T-- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 764 | Q764del1 | caA | ca- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 764 | Q764R | cAa | cGa | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 764 | Q764del | CAA | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 764 | Q764L | cAa | cTa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 764 | Q764P | cAa | cCa | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 764 | Q764Q | caA | caG | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 764 | Q764H | caA | caC | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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