CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 763 & Codon = acT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3763T763TT1581TsynacGacT753268690.9119765006-5008

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3763T763TacGacT68697532All0.001314
ORF1ab/nsp3763T763TacGacT15561556B.1.619.10.998076
ORF1ab/nsp3763T763TacGacT11091109B.1.6190.966028
ORF1ab/nsp3763T763TacGacT728734AY.440.004431
ORF1ab/nsp3763T763TacGacT519615B.1.1.70.000465
ORF1ab/nsp3763T763TacGacT384424AY.40.000598
ORF1ab/nsp3763T763TacGacT332337AY.160.126044
ORF1ab/nsp3763T763TacGacT226287B.1.617.20.000851
ORF1ab/nsp3763T763TacGacT232253AY.430.001028
ORF1ab/nsp3763T763TacGacT142232B.1.1770.00187
ORF1ab/nsp3763T763TacGacT175175B.1.1.1570.159817
ORF1ab/nsp3763T763TacGacT128159B.1.20.001127
ORF1ab/nsp3763T763TacGacT8989B.1.36.20.956989
ORF1ab/nsp3763T763TacGacT6874B.10.000623
ORF1ab/nsp3763T763TacGacT4671AY.250.000277
ORF1ab/nsp3763T763TacGacT7070AY.39.10.002773
ORF1ab/nsp3763T763TacGacT6464AY.99.20.005898
ORF1ab/nsp3763T763TacGacT5559AY.1030.000341
ORF1ab/nsp3763T763TacGacT4353B.1.5260.001011
ORF1ab/nsp3763T763TacGacT4647AY.1110.008425
ORF1ab/nsp3763T763TacGacT4445AY.330.002938
ORF1ab/nsp3763T763TacGacT3842AY.30.000378
ORF1ab/nsp3763T763TacGacT2141P.10.000331
ORF1ab/nsp3763T763TacGacT3840AY.470.001182
ORF1ab/nsp3763T763TacGacT3638B.1.10.000653
ORF1ab/nsp3763T763TacGacT3637AY.260.001019
ORF1ab/nsp3763T763TacGacT3334B.1.5960.002876
ORF1ab/nsp3763T763TacGacT2128B.1.4290.000494
ORF1ab/nsp3763T763TacGacT2325B.1.3510.000684
ORF1ab/nsp3763T763TacGacT2525B.1.360.003648
ORF1ab/nsp3763T763TacGacT1922AY.1200.000706
ORF1ab/nsp3763T763TacGacT2222AY.920.00632
ORF1ab/nsp3763T763TacGacT1919B.1.1.2140.001054
ORF1ab/nsp3763T763TacGacT1316B.1.1600.000405
ORF1ab/nsp3763T763TacGacT1215AY.1020.000318
ORF1ab/nsp3763T763TacGacT913AY.1210.001218
ORF1ab/nsp3763T763TacGacT1112B.1.2340.001451
ORF1ab/nsp3763T763TacGacT1112B.1.4270.000555
ORF1ab/nsp3763T763TacGacT1212B.1.5950.003132
ORF1ab/nsp3763T763TacGacT911AY.1190.000318
ORF1ab/nsp3763T763TacGacT1111B.1.1.2160.009795
ORF1ab/nsp3763T763TacGacT1111B.1.1.3330.011841
ORF1ab/nsp3763T763TacGacT111B.1.1390.000733
ORF1ab/nsp3763T763TacGacT1111B.1.3690.003137
ORF1ab/nsp3763T763TacGacT710AY.1000.000322
ORF1ab/nsp3763T763TacGacT310AY.200.000117
ORF1ab/nsp3763T763TacGacT1010AY.98.10.000484
ORF1ab/nsp3763T763TacGacT1010B.1.177.400.051546
ORF1ab/nsp3763T763TacGacT89AY.60.000329
ORF1ab/nsp3763T763TacGacT79B.1.6210.00062
ORF1ab/nsp3763T763TacGacT39D.20.000225
ORF1ab/nsp3763T763TacGacT78AY.290.00011
ORF1ab/nsp3763T763TacGacT58AY.50.000103
ORF1ab/nsp3763T763TacGacT38B.1.466.20.001174
ORF1ab/nsp3763T763TacGacT78C.370.000812
ORF1ab/nsp3763T763TacGacT47AY.390.000099
ORF1ab/nsp3763T763TacGacT77AY.46.40.001152
ORF1ab/nsp3763T763TacGacT57B.1.2430.000348
ORF1ab/nsp3763T763TacGacT77B.1.2760.118644
ORF1ab/nsp3763T763TacGacT77B.1.36.170.003458
ORF1ab/nsp3763T763TacGacT67B.1.6370.000438
ORF1ab/nsp3763T763TacGacT56AY.130.000805
ORF1ab/nsp3763T763TacGacT46AY.530.00115
ORF1ab/nsp3763T763TacGacT56AY.750.00028
ORF1ab/nsp3763T763TacGacT26B.1.1.1530.002191
ORF1ab/nsp3763T763TacGacT66B.1.1.2220.001224
ORF1ab/nsp3763T763TacGacT46B.1.1.5190.000159
ORF1ab/nsp3763T763TacGacT16B.1.1040.00369
ORF1ab/nsp3763T763TacGacT66B.1.177.870.004367
ORF1ab/nsp3763T763TacGacT16B.1.4560.003268
ORF1ab/nsp3763T763TacGacT55A.2.50.002495
ORF1ab/nsp3763T763TacGacT55AY.360.000741
ORF1ab/nsp3763T763TacGacT55AY.4.50.000537
ORF1ab/nsp3763T763TacGacT45AY.450.000487
ORF1ab/nsp3763T763TacGacT55AY.480.002326
ORF1ab/nsp3763T763TacGacT55B0.000639
ORF1ab/nsp3763T763TacGacT25B.1.36.80.002
ORF1ab/nsp3763T763TacGacT55B.1.3970.024272
ORF1ab/nsp3763T763TacGacT55B.1.4220.004062
ORF1ab/nsp3763T763TacGacT55B.1.6200.00473
ORF1ab/nsp3763T763TacGacT55K.20.2
ORF1ab/nsp3763T763TacGacT55R.10.00045
ORF1ab/nsp3763T763TacGacT44AY.190.004561
ORF1ab/nsp3763T763TacGacT34AY.240.001293
ORF1ab/nsp3763T763TacGacT24AY.4.20.000043
ORF1ab/nsp3763T763TacGacT34AY.540.000286
ORF1ab/nsp3763T763TacGacT24AY.620.000871
ORF1ab/nsp3763T763TacGacT34AY.90.000203
ORF1ab/nsp3763T763TacGacT44B.1.177.330.006579
ORF1ab/nsp3763T763TacGacT34B.1.36.290.001552
ORF1ab/nsp3763T763TacGacT44B.1.617.10.000516
ORF1ab/nsp3763T763TacGacT33A0.001161
ORF1ab/nsp3763T763TacGacT33AY.1090.002219
ORF1ab/nsp3763T763TacGacT23AY.1130.000285
ORF1ab/nsp3763T763TacGacT33AY.1170.000254
ORF1ab/nsp3763T763TacGacT23AY.20.000712
ORF1ab/nsp3763T763TacGacT33AY.340.000291
ORF1ab/nsp3763T763TacGacT33AY.650.001599
ORF1ab/nsp3763T763TacGacT33AY.690.00056
ORF1ab/nsp3763T763TacGacT33AY.70.000588
ORF1ab/nsp3763T763TacGacT33AY.770.003382
ORF1ab/nsp3763T763TacGacT33AY.980.000237
ORF1ab/nsp3763T763TacGacT23B.1.1.100.00223
ORF1ab/nsp3763T763TacGacT33B.1.1.3060.001315
ORF1ab/nsp3763T763TacGacT33B.1.1.3170.001235
ORF1ab/nsp3763T763TacGacT33B.1.1.330.001263
ORF1ab/nsp3763T763TacGacT33B.1.160.270.045455
ORF1ab/nsp3763T763TacGacT33B.1.264.10.142857
ORF1ab/nsp3763T763TacGacT33B.1.5250.000339
ORF1ab/nsp3763T763TacGacT33P.1.20.003468
ORF1ab/nsp3763T763TacGacT33Q.80.000495
ORF1ab/nsp3763T763TacGacT22AY.10.000791
ORF1ab/nsp3763T763TacGacT12AY.1060.000335
ORF1ab/nsp3763T763TacGacT22AY.1140.000462
ORF1ab/nsp3763T763TacGacT22AY.230.000139
ORF1ab/nsp3763T763TacGacT22AY.270.000129
ORF1ab/nsp3763T763TacGacT12AY.350.000233
ORF1ab/nsp3763T763TacGacT12AY.370.000316
ORF1ab/nsp3763T763TacGacT22AY.420.00008
ORF1ab/nsp3763T763TacGacT12AY.590.00053
ORF1ab/nsp3763T763TacGacT22AY.9.20.000073
ORF1ab/nsp3763T763TacGacT22B.1.1.2620.030303
ORF1ab/nsp3763T763TacGacT22B.1.1.3180.000604
ORF1ab/nsp3763T763TacGacT12B.1.1.3560.008547
ORF1ab/nsp3763T763TacGacT22B.1.1.500.001358
ORF1ab/nsp3763T763TacGacT12B.1.2580.000067
ORF1ab/nsp3763T763TacGacT12B.1.4000.000429
ORF1ab/nsp3763T763TacGacT22B.1.5750.000607
ORF1ab/nsp3763T763TacGacT22B.1.621.10.001012
ORF1ab/nsp3763T763TacGacT22P.1.10.000635
ORF1ab/nsp3763T763TacGacT22P.1.160.000748
ORF1ab/nsp3763T763TacGacT22P.20.000373
ORF1ab/nsp3763T763TacGacT22Q.10.000253
ORF1ab/nsp3763T763TacGacT11AW.10.003049
ORF1ab/nsp3763T763TacGacT11AY.1080.001103
ORF1ab/nsp3763T763TacGacT11AY.120.000316
ORF1ab/nsp3763T763TacGacT11AY.140.000088
ORF1ab/nsp3763T763TacGacT11AY.180.010101
ORF1ab/nsp3763T763TacGacT11AY.3.10.000085
ORF1ab/nsp3763T763TacGacT11AY.4.40.000409
ORF1ab/nsp3763T763TacGacT11AY.410.000294
ORF1ab/nsp3763T763TacGacT11AY.46.50.000198
ORF1ab/nsp3763T763TacGacT11AY.5.30.000337
ORF1ab/nsp3763T763TacGacT11AY.500.000799
ORF1ab/nsp3763T763TacGacT11AY.670.000464
ORF1ab/nsp3763T763TacGacT11AY.700.000209
ORF1ab/nsp3763T763TacGacT11AY.740.000116
ORF1ab/nsp3763T763TacGacT11AY.75.10.00018
ORF1ab/nsp3763T763TacGacT11AY.840.000437
ORF1ab/nsp3763T763TacGacT11AY.990.001049
ORF1ab/nsp3763T763TacGacT11AZ.20.000821
ORF1ab/nsp3763T763TacGacT11B.1.1.2680.014925
ORF1ab/nsp3763T763TacGacT11B.1.1.2770.000759
ORF1ab/nsp3763T763TacGacT11B.1.1.3110.000358
ORF1ab/nsp3763T763TacGacT11B.1.1.3120.001912
ORF1ab/nsp3763T763TacGacT11B.1.1.3240.052632
ORF1ab/nsp3763T763TacGacT11B.1.1.3690.000446
ORF1ab/nsp3763T763TacGacT11B.1.1.3720.000689
ORF1ab/nsp3763T763TacGacT11B.1.1.390.00051
ORF1ab/nsp3763T763TacGacT11B.1.1.40.002976
ORF1ab/nsp3763T763TacGacT11B.1.1.4340.000349
ORF1ab/nsp3763T763TacGacT11B.1.1.630.000386
ORF1ab/nsp3763T763TacGacT11B.1.1.700.000341
ORF1ab/nsp3763T763TacGacT11B.1.1640.014925
ORF1ab/nsp3763T763TacGacT11B.1.177.450.000381
ORF1ab/nsp3763T763TacGacT11B.1.177.730.000566
ORF1ab/nsp3763T763TacGacT11B.1.177.830.001481
ORF1ab/nsp3763T763TacGacT11B.1.177.880.012346
ORF1ab/nsp3763T763TacGacT11B.1.258.110.000396
ORF1ab/nsp3763T763TacGacT11B.1.2730.012987
ORF1ab/nsp3763T763TacGacT11B.1.3200.001245
ORF1ab/nsp3763T763TacGacT11B.1.3600.012658
ORF1ab/nsp3763T763TacGacT11B.1.3750.00082
ORF1ab/nsp3763T763TacGacT11B.1.4110.003704
ORF1ab/nsp3763T763TacGacT11B.1.4680.005714
ORF1ab/nsp3763T763TacGacT11B.1.4700.001404
ORF1ab/nsp3763T763TacGacT11B.1.595.40.007299
ORF1ab/nsp3763T763TacGacT11B.1.617.30.002985
ORF1ab/nsp3763T763TacGacT11B.1.6330.041667
ORF1ab/nsp3763T763TacGacT11B.230.002924
ORF1ab/nsp3763T763TacGacT11C.10.002392
ORF1ab/nsp3763T763TacGacT11C.360.000911
ORF1ab/nsp3763T763TacGacT11N.90.005952
ORF1ab/nsp3763T763TacGacT11P.1.140.000048
ORF1ab/nsp3763T763TacGacT11P.1.70.000319
ORF1ab/nsp3763T763TacGacT11P.30.001595

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.