CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 763 & Codon = acA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3763T763TT1581TsynacGacA75325820.07727035006-5008

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3763T763TacGacA5827532All0.000111
ORF1ab/nsp3763T763TacGacA4734AY.440.000024
ORF1ab/nsp3763T763TacGacA86615B.1.1.70.000077
ORF1ab/nsp3763T763TacGacA22424AY.40.000034
ORF1ab/nsp3763T763TacGacA5337AY.160.001898
ORF1ab/nsp3763T763TacGacA54287B.1.617.20.000203
ORF1ab/nsp3763T763TacGacA18253AY.430.00008
ORF1ab/nsp3763T763TacGacA88232B.1.1770.001159
ORF1ab/nsp3763T763TacGacA29159B.1.20.000255
ORF1ab/nsp3763T763TacGacA674B.10.000055
ORF1ab/nsp3763T763TacGacA1371AY.250.000078
ORF1ab/nsp3763T763TacGacA459AY.1030.000025
ORF1ab/nsp3763T763TacGacA1053B.1.5260.000235
ORF1ab/nsp3763T763TacGacA147AY.1110.000183
ORF1ab/nsp3763T763TacGacA145AY.330.000067
ORF1ab/nsp3763T763TacGacA342AY.30.00003
ORF1ab/nsp3763T763TacGacA1641P.10.000252
ORF1ab/nsp3763T763TacGacA240AY.470.000062
ORF1ab/nsp3763T763TacGacA238B.1.10.000036
ORF1ab/nsp3763T763TacGacA134B.1.5960.000087
ORF1ab/nsp3763T763TacGacA2929AY.950.02207
ORF1ab/nsp3763T763TacGacA628B.1.4290.000141
ORF1ab/nsp3763T763TacGacA2727AY.46.60.00195
ORF1ab/nsp3763T763TacGacA125B.1.3510.00003
ORF1ab/nsp3763T763TacGacA322AY.1200.000112
ORF1ab/nsp3763T763TacGacA316B.1.1600.000094
ORF1ab/nsp3763T763TacGacA315AY.1020.00008
ORF1ab/nsp3763T763TacGacA112B.1.2340.000132
ORF1ab/nsp3763T763TacGacA112B.1.4270.00005
ORF1ab/nsp3763T763TacGacA211AY.1190.000071
ORF1ab/nsp3763T763TacGacA1011B.1.1390.007331
ORF1ab/nsp3763T763TacGacA310AY.1000.000138
ORF1ab/nsp3763T763TacGacA710AY.200.000272
ORF1ab/nsp3763T763TacGacA19AY.60.000041
ORF1ab/nsp3763T763TacGacA29B.1.6210.000177
ORF1ab/nsp3763T763TacGacA39D.20.000225
ORF1ab/nsp3763T763TacGacA18AY.290.000016
ORF1ab/nsp3763T763TacGacA38AY.50.000062
ORF1ab/nsp3763T763TacGacA58B.1.466.20.001956
ORF1ab/nsp3763T763TacGacA18C.370.000116
ORF1ab/nsp3763T763TacGacA27AY.390.000049
ORF1ab/nsp3763T763TacGacA27B.1.2430.000139
ORF1ab/nsp3763T763TacGacA77B.1.258.140.006863
ORF1ab/nsp3763T763TacGacA17B.1.6370.000073
ORF1ab/nsp3763T763TacGacA16AY.130.000161
ORF1ab/nsp3763T763TacGacA26AY.530.000575
ORF1ab/nsp3763T763TacGacA16AY.750.000056
ORF1ab/nsp3763T763TacGacA46B.1.1.1530.004381
ORF1ab/nsp3763T763TacGacA16B.1.1.5190.00004
ORF1ab/nsp3763T763TacGacA56B.1.1040.01845
ORF1ab/nsp3763T763TacGacA56B.1.4560.01634
ORF1ab/nsp3763T763TacGacA55AE.80.002445
ORF1ab/nsp3763T763TacGacA15AY.450.000122
ORF1ab/nsp3763T763TacGacA35B.1.36.80.003
ORF1ab/nsp3763T763TacGacA240.111111
ORF1ab/nsp3763T763TacGacA24AY.4.20.000043
ORF1ab/nsp3763T763TacGacA14AY.540.000095
ORF1ab/nsp3763T763TacGacA24AY.620.000871
ORF1ab/nsp3763T763TacGacA14AY.90.000068
ORF1ab/nsp3763T763TacGacA14B.1.36.290.000517
ORF1ab/nsp3763T763TacGacA44B.60.00364
ORF1ab/nsp3763T763TacGacA44P.1.150.000929
ORF1ab/nsp3763T763TacGacA13AY.1130.000142
ORF1ab/nsp3763T763TacGacA13AY.20.000356
ORF1ab/nsp3763T763TacGacA13B.1.1.100.001115
ORF1ab/nsp3763T763TacGacA33B.1.177.210.000229
ORF1ab/nsp3763T763TacGacA33B.1.177.600.000655
ORF1ab/nsp3763T763TacGacA33B.1.3430.0625
ORF1ab/nsp3763T763TacGacA33B.1.5770.002062
ORF1ab/nsp3763T763TacGacA12AY.1060.000335
ORF1ab/nsp3763T763TacGacA12AY.350.000233
ORF1ab/nsp3763T763TacGacA12AY.370.000316
ORF1ab/nsp3763T763TacGacA22AY.380.000999
ORF1ab/nsp3763T763TacGacA12AY.590.00053
ORF1ab/nsp3763T763TacGacA12B.1.1.3560.008547
ORF1ab/nsp3763T763TacGacA12B.1.2580.000067
ORF1ab/nsp3763T763TacGacA22B.1.3060.011429
ORF1ab/nsp3763T763TacGacA22B.1.4660.046512
ORF1ab/nsp3763T763TacGacA22C.300.003454
ORF1ab/nsp3763T763TacGacA11AY.100.00053
ORF1ab/nsp3763T763TacGacA11AY.1100.000113
ORF1ab/nsp3763T763TacGacA11AY.550.000917
ORF1ab/nsp3763T763TacGacA11AY.610.000105
ORF1ab/nsp3763T763TacGacA11AY.780.001541
ORF1ab/nsp3763T763TacGacA11AY.790.001211
ORF1ab/nsp3763T763TacGacA11AY.9.10.000084
ORF1ab/nsp3763T763TacGacA11B.1.1.1920.002309
ORF1ab/nsp3763T763TacGacA11B.1.1.250.000569
ORF1ab/nsp3763T763TacGacA11B.1.1.3030.002762
ORF1ab/nsp3763T763TacGacA11B.1.1.3050.003861
ORF1ab/nsp3763T763TacGacA11B.1.214.30.007143
ORF1ab/nsp3763T763TacGacA11B.1.2790.000514
ORF1ab/nsp3763T763TacGacA11B.1.3960.000706
ORF1ab/nsp3763T763TacGacA11B.1.4590.004082
ORF1ab/nsp3763T763TacGacA11B.310.003731
ORF1ab/nsp3763T763TacGacA11C.40.01
ORF1ab/nsp3763T763TacGacA11P.1.120.000484
ORF1ab/nsp3763T763TacGacA11P.70.004367

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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