CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 763

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3763T763TT1581TsynacGacT753268690.9119765006-5008
ORF1ab/nsp3763T763TT1581TsynacGacA75325820.07727035006-5008
ORF1ab/nsp3763T763TT1581TsynacGacC7532810.01075415006-5008
ORF1ab/nsp3763T763MT1581MnonsynaCgaTg1587158715006-5008
ORF1ab/nsp3763T763AT1581AnonsynAcgGcg13913915006-5008
ORF1ab/nsp3763T763delT1581deldelACG---767615006-5008
ORF1ab/nsp3763T763KT1581KnonsynaCgaAg141415006-5008
ORF1ab/nsp3763T763del1T1581del1delacGac-1190.8181825006-5008
ORF1ab/nsp3763T763del1T1581del1delaCGaT-1110.09090915006-5008
ORF1ab/nsp3763T763del1T1581del1delAcg-cg1110.09090915006-5008
ORF1ab/nsp3763T763ST1581SnonsynAcgTcg9915006-5008
ORF1ab/nsp3763T763IT1581InonsynaCGaTT6615006-5008
ORF1ab/nsp3763T763PT1581PnonsynAcgCcg210.55006-5008
ORF1ab/nsp3763T763PT1581PnonsynAcGCcA210.55006-5008
ORF1ab/nsp3763T763LT1581LnonsynACgTTg1115006-5008

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3763T763TacGacT68697532All0.001314
ORF1ab/nsp3763T763TacGacA5827532All0.000111
ORF1ab/nsp3763T763TacGacC817532All0.000015
ORF1ab/nsp3763T763MaCgaTg15871587All0.000304
ORF1ab/nsp3763T763TacGacT15561556B.1.619.10.998076
ORF1ab/nsp3763T763TacGacT11091109B.1.6190.966028
ORF1ab/nsp3763T763TacGacT728734AY.440.004431
ORF1ab/nsp3763T763TacGacA4734AY.440.000024
ORF1ab/nsp3763T763TacGacC2734AY.440.000012
ORF1ab/nsp3763T763MaCgaTg665665B.1.1.4330.947293
ORF1ab/nsp3763T763TacGacT519615B.1.1.70.000465
ORF1ab/nsp3763T763TacGacA86615B.1.1.70.000077
ORF1ab/nsp3763T763TacGacC10615B.1.1.70.000009
ORF1ab/nsp3763T763TacGacT384424AY.40.000598
ORF1ab/nsp3763T763TacGacA22424AY.40.000034
ORF1ab/nsp3763T763TacGacC18424AY.40.000028
ORF1ab/nsp3763T763TacGacT332337AY.160.126044
ORF1ab/nsp3763T763TacGacA5337AY.160.001898
ORF1ab/nsp3763T763TacGacT226287B.1.617.20.000851
ORF1ab/nsp3763T763TacGacA54287B.1.617.20.000203
ORF1ab/nsp3763T763TacGacC7287B.1.617.20.000026
ORF1ab/nsp3763T763TacGacT232253AY.430.001028
ORF1ab/nsp3763T763TacGacA18253AY.430.00008
ORF1ab/nsp3763T763TacGacC3253AY.430.000013
ORF1ab/nsp3763T763TacGacT142232B.1.1770.00187
ORF1ab/nsp3763T763TacGacA88232B.1.1770.001159
ORF1ab/nsp3763T763TacGacC2232B.1.1770.000026
ORF1ab/nsp3763T763MaCgaTg202202AY.420.008126
ORF1ab/nsp3763T763MaCgaTg181181B.1.1.70.000162
ORF1ab/nsp3763T763TacGacT175175B.1.1.1570.159817
ORF1ab/nsp3763T763TacGacT128159B.1.20.001127
ORF1ab/nsp3763T763TacGacA29159B.1.20.000255
ORF1ab/nsp3763T763TacGacC2159B.1.20.000018
ORF1ab/nsp3763T763AAcgGcg139139All0.000027
ORF1ab/nsp3763T763MaCgaTg110110AY.40.000171
ORF1ab/nsp3763T763TacGacT8989B.1.36.20.956989
ORF1ab/nsp3763T763delACG---7676All0.000015
ORF1ab/nsp3763T763TacGacT6874B.10.000623
ORF1ab/nsp3763T763TacGacA674B.10.000055
ORF1ab/nsp3763T763TacGacT4671AY.250.000277
ORF1ab/nsp3763T763TacGacA1371AY.250.000078
ORF1ab/nsp3763T763TacGacC1271AY.250.000072
ORF1ab/nsp3763T763TacGacT7070AY.39.10.002773
ORF1ab/nsp3763T763TacGacT6464AY.99.20.005898
ORF1ab/nsp3763T763TacGacT5559AY.1030.000341
ORF1ab/nsp3763T763TacGacA459AY.1030.000025
ORF1ab/nsp3763T763TacGacT4353B.1.5260.001011
ORF1ab/nsp3763T763TacGacA1053B.1.5260.000235
ORF1ab/nsp3763T763TacGacT4647AY.1110.008425
ORF1ab/nsp3763T763TacGacA147AY.1110.000183
ORF1ab/nsp3763T763TacGacT4445AY.330.002938
ORF1ab/nsp3763T763TacGacA145AY.330.000067
ORF1ab/nsp3763T763AAcgGcg4545B.1.1.70.00004
ORF1ab/nsp3763T763TacGacT3842AY.30.000378
ORF1ab/nsp3763T763TacGacA342AY.30.00003
ORF1ab/nsp3763T763TacGacC142AY.30.00001
ORF1ab/nsp3763T763TacGacT2141P.10.000331
ORF1ab/nsp3763T763TacGacA1641P.10.000252
ORF1ab/nsp3763T763TacGacC441P.10.000063
ORF1ab/nsp3763T763TacGacT3840AY.470.001182
ORF1ab/nsp3763T763TacGacA240AY.470.000062
ORF1ab/nsp3763T763TacGacT3638B.1.10.000653
ORF1ab/nsp3763T763TacGacA238B.1.10.000036
ORF1ab/nsp3763T763TacGacT3637AY.260.001019
ORF1ab/nsp3763T763TacGacC137AY.260.000028
ORF1ab/nsp3763T763AAcgGcg3535AY.1030.000217
ORF1ab/nsp3763T763MaCgaTg3434B.1.5960.002963
ORF1ab/nsp3763T763TacGacT3334B.1.5960.002876
ORF1ab/nsp3763T763TacGacA134B.1.5960.000087
ORF1ab/nsp3763T763TacGacA2929AY.950.02207
ORF1ab/nsp3763T763MaCgaTg2929B.1.617.20.000109
ORF1ab/nsp3763T763TacGacT2128B.1.4290.000494
ORF1ab/nsp3763T763TacGacA628B.1.4290.000141
ORF1ab/nsp3763T763TacGacC128B.1.4290.000024
ORF1ab/nsp3763T763TacGacA2727AY.46.60.00195
ORF1ab/nsp3763T763MaCgaTg2525B.10.000229
ORF1ab/nsp3763T763TacGacT2325B.1.3510.000684
ORF1ab/nsp3763T763TacGacC125B.1.3510.00003
ORF1ab/nsp3763T763TacGacA125B.1.3510.00003
ORF1ab/nsp3763T763TacGacT2525B.1.360.003648
ORF1ab/nsp3763T763MaCgaTg2424B.1.20.000211
ORF1ab/nsp3763T763delACG---2323B.1.1.70.000021
ORF1ab/nsp3763T763MaCgaTg2222AY.1030.000137
ORF1ab/nsp3763T763TacGacT1922AY.1200.000706
ORF1ab/nsp3763T763TacGacA322AY.1200.000112
ORF1ab/nsp3763T763TacGacT2222AY.920.00632
ORF1ab/nsp3763T763MaCgaTg1919AY.430.000084
ORF1ab/nsp3763T763TacGacT1919B.1.1.2140.001054
ORF1ab/nsp3763T763MaCgaTg1616AY.440.000097
ORF1ab/nsp3763T763MaCgaTg1616B.1.10.00029
ORF1ab/nsp3763T763TacGacT1316B.1.1600.000405
ORF1ab/nsp3763T763TacGacA316B.1.1600.000094
ORF1ab/nsp3763T763TacGacT1215AY.1020.000318
ORF1ab/nsp3763T763TacGacA315AY.1020.00008
ORF1ab/nsp3763T763KaCgaAg1414All0.000003
ORF1ab/nsp3763T763TacGacT913AY.1210.001218
ORF1ab/nsp3763T763TacGacC413AY.1210.000541
ORF1ab/nsp3763T763AAcgGcg1313AY.40.00002
ORF1ab/nsp3763T763TacGacT1112B.1.2340.001451
ORF1ab/nsp3763T763TacGacA112B.1.2340.000132
ORF1ab/nsp3763T763TacGacT1112B.1.4270.000555
ORF1ab/nsp3763T763TacGacA112B.1.4270.00005
ORF1ab/nsp3763T763TacGacT1212B.1.5950.003132
ORF1ab/nsp3763T763del1acGac-911All0.000002
ORF1ab/nsp3763T763del1Acg-cg111All0
ORF1ab/nsp3763T763del1aCGaT-111All0
ORF1ab/nsp3763T763TacGacT911AY.1190.000318
ORF1ab/nsp3763T763TacGacA211AY.1190.000071
ORF1ab/nsp3763T763MaCgaTg1111AY.390.000272
ORF1ab/nsp3763T763TacGacT1111B.1.1.2160.009795
ORF1ab/nsp3763T763MaCgaTg1111B.1.1.280.003424
ORF1ab/nsp3763T763TacGacT1111B.1.1.3330.011841
ORF1ab/nsp3763T763TacGacA1011B.1.1390.007331
ORF1ab/nsp3763T763TacGacT111B.1.1390.000733
ORF1ab/nsp3763T763TacGacT1111B.1.3690.003137
ORF1ab/nsp3763T763MaCgaTg1111P.10.000173
ORF1ab/nsp3763T763TacGacT710AY.1000.000322
ORF1ab/nsp3763T763TacGacA310AY.1000.000138
ORF1ab/nsp3763T763TacGacA710AY.200.000272
ORF1ab/nsp3763T763TacGacT310AY.200.000117
ORF1ab/nsp3763T763TacGacT1010AY.98.10.000484
ORF1ab/nsp3763T763MaCgaTg1010B0.001278
ORF1ab/nsp3763T763delACG---1010B.10.000092
ORF1ab/nsp3763T763TacGacT1010B.1.177.400.051546
ORF1ab/nsp3763T763MaCgaTg1010B.1.4270.000505
ORF1ab/nsp3763T763MaCgaTg1010B.1.4290.000235
ORF1ab/nsp3763T763MaCgaTg1010B.1.6370.000731
ORF1ab/nsp3763T763SAcgTcg99All0.000002
ORF1ab/nsp3763T763MaCgaTg99AY.250.000054
ORF1ab/nsp3763T763TacGacT89AY.60.000329
ORF1ab/nsp3763T763TacGacA19AY.60.000041
ORF1ab/nsp3763T763TacGacT79B.1.6210.00062
ORF1ab/nsp3763T763TacGacA29B.1.6210.000177
ORF1ab/nsp3763T763AAcgGcg99B.1.621.10.004552
ORF1ab/nsp3763T763TacGacA39D.20.000225
ORF1ab/nsp3763T763TacGacC39D.20.000225
ORF1ab/nsp3763T763TacGacT39D.20.000225
ORF1ab/nsp3763T763TacGacT78AY.290.00011
ORF1ab/nsp3763T763TacGacA18AY.290.000016
ORF1ab/nsp3763T763TacGacT58AY.50.000103
ORF1ab/nsp3763T763TacGacA38AY.50.000062
ORF1ab/nsp3763T763TacGacA58B.1.466.20.001956
ORF1ab/nsp3763T763TacGacT38B.1.466.20.001174
ORF1ab/nsp3763T763AAcgGcg88B.1.617.20.00003
ORF1ab/nsp3763T763TacGacT78C.370.000812
ORF1ab/nsp3763T763TacGacA18C.370.000116
ORF1ab/nsp3763T763TacGacT47AY.390.000099
ORF1ab/nsp3763T763TacGacA27AY.390.000049
ORF1ab/nsp3763T763TacGacC17AY.390.000025
ORF1ab/nsp3763T763TacGacT77AY.46.40.001152
ORF1ab/nsp3763T763MaCgaTg77B.1.1.2220.001428
ORF1ab/nsp3763T763TacGacT57B.1.2430.000348
ORF1ab/nsp3763T763TacGacA27B.1.2430.000139
ORF1ab/nsp3763T763TacGacA77B.1.258.140.006863
ORF1ab/nsp3763T763TacGacT77B.1.2760.118644
ORF1ab/nsp3763T763MaCgaTg77B.1.3510.000208
ORF1ab/nsp3763T763TacGacT77B.1.36.170.003458
ORF1ab/nsp3763T763TacGacT67B.1.6370.000438
ORF1ab/nsp3763T763TacGacA17B.1.6370.000073
ORF1ab/nsp3763T763IaCGaTT66All0.000001
ORF1ab/nsp3763T763TacGacT56AY.130.000805
ORF1ab/nsp3763T763TacGacA16AY.130.000161
ORF1ab/nsp3763T763MaCgaTg66AY.30.00006
ORF1ab/nsp3763T763TacGacT46AY.530.00115
ORF1ab/nsp3763T763TacGacA26AY.530.000575
ORF1ab/nsp3763T763MaCgaTg66AY.750.000336
ORF1ab/nsp3763T763TacGacT56AY.750.00028
ORF1ab/nsp3763T763TacGacA16AY.750.000056
ORF1ab/nsp3763T763TacGacA46B.1.1.1530.004381
ORF1ab/nsp3763T763TacGacT26B.1.1.1530.002191
ORF1ab/nsp3763T763TacGacT66B.1.1.2220.001224
ORF1ab/nsp3763T763TacGacT46B.1.1.5190.000159
ORF1ab/nsp3763T763TacGacC16B.1.1.5190.00004
ORF1ab/nsp3763T763TacGacA16B.1.1.5190.00004
ORF1ab/nsp3763T763KaCgaAg66B.1.1.70.000005
ORF1ab/nsp3763T763TacGacA56B.1.1040.01845
ORF1ab/nsp3763T763TacGacT16B.1.1040.00369
ORF1ab/nsp3763T763TacGacT66B.1.177.870.004367
ORF1ab/nsp3763T763TacGacA56B.1.4560.01634
ORF1ab/nsp3763T763TacGacT16B.1.4560.003268
ORF1ab/nsp3763T763TacGacT55A.2.50.002495
ORF1ab/nsp3763T763TacGacA55AE.80.002445
ORF1ab/nsp3763T763AAcgGcg55AY.250.00003
ORF1ab/nsp3763T763TacGacT55AY.360.000741
ORF1ab/nsp3763T763TacGacT55AY.4.50.000537
ORF1ab/nsp3763T763IaCGaTT55AY.420.000201
ORF1ab/nsp3763T763TacGacT45AY.450.000487
ORF1ab/nsp3763T763TacGacA15AY.450.000122
ORF1ab/nsp3763T763TacGacT55AY.480.002326
ORF1ab/nsp3763T763MaCgaTg55AY.90.000338
ORF1ab/nsp3763T763TacGacT55B0.000639
ORF1ab/nsp3763T763MaCgaTg55B.1.1110.005875
ORF1ab/nsp3763T763MaCgaTg55B.1.2430.000348
ORF1ab/nsp3763T763TacGacA35B.1.36.80.003
ORF1ab/nsp3763T763TacGacT25B.1.36.80.002
ORF1ab/nsp3763T763TacGacT55B.1.3970.024272
ORF1ab/nsp3763T763TacGacT55B.1.4220.004062
ORF1ab/nsp3763T763MaCgaTg55B.1.5260.000118
ORF1ab/nsp3763T763TacGacT55B.1.6200.00473
ORF1ab/nsp3763T763TacGacT55K.20.2
ORF1ab/nsp3763T763TacGacT55R.10.00045
ORF1ab/nsp3763T763TacGacC240.111111
ORF1ab/nsp3763T763TacGacA240.111111
ORF1ab/nsp3763T763MaCgaTg44AY.1000.000184
ORF1ab/nsp3763T763MaCgaTg44AY.1200.000149
ORF1ab/nsp3763T763TacGacT44AY.190.004561
ORF1ab/nsp3763T763TacGacT34AY.240.001293
ORF1ab/nsp3763T763TacGacC14AY.240.000431
ORF1ab/nsp3763T763MaCgaTg44AY.260.000113
ORF1ab/nsp3763T763TacGacA24AY.4.20.000043
ORF1ab/nsp3763T763TacGacT24AY.4.20.000043
ORF1ab/nsp3763T763TacGacT34AY.540.000286
ORF1ab/nsp3763T763TacGacA14AY.540.000095
ORF1ab/nsp3763T763TacGacA24AY.620.000871
ORF1ab/nsp3763T763TacGacT24AY.620.000871
ORF1ab/nsp3763T763TacGacT34AY.90.000203
ORF1ab/nsp3763T763TacGacA14AY.90.000068
ORF1ab/nsp3763T763delACG---44B.1.10.000073
ORF1ab/nsp3763T763MaCgaTg44B.1.1.3280.067797
ORF1ab/nsp3763T763MaCgaTg44B.1.1770.000053
ORF1ab/nsp3763T763delACG---44B.1.1770.000053
ORF1ab/nsp3763T763TacGacT44B.1.177.330.006579
ORF1ab/nsp3763T763TacGacT34B.1.36.290.001552
ORF1ab/nsp3763T763TacGacA14B.1.36.290.000517
ORF1ab/nsp3763T763MaCgaTg44B.1.4800.00995
ORF1ab/nsp3763T763TacGacT44B.1.617.10.000516
ORF1ab/nsp3763T763TacGacA44B.60.00364
ORF1ab/nsp3763T763TacGacA44P.1.150.000929
ORF1ab/nsp3763T763AAcgGcg44Q.10.000505
ORF1ab/nsp3763T763TacGacT33A0.001161
ORF1ab/nsp3763T763TacGacT33AY.1090.002219
ORF1ab/nsp3763T763TacGacT23AY.1130.000285
ORF1ab/nsp3763T763TacGacA13AY.1130.000142
ORF1ab/nsp3763T763TacGacT33AY.1170.000254
ORF1ab/nsp3763T763MaCgaTg33AY.1180.000188
ORF1ab/nsp3763T763TacGacT23AY.20.000712
ORF1ab/nsp3763T763TacGacA13AY.20.000356
ORF1ab/nsp3763T763MaCgaTg33AY.270.000194
ORF1ab/nsp3763T763TacGacT33AY.340.000291
ORF1ab/nsp3763T763AAcgGcg33AY.430.000013
ORF1ab/nsp3763T763TacGacT33AY.650.001599
ORF1ab/nsp3763T763TacGacT33AY.690.00056
ORF1ab/nsp3763T763TacGacT33AY.70.000588
ORF1ab/nsp3763T763MaCgaTg33AY.75.10.000541
ORF1ab/nsp3763T763TacGacT33AY.770.003382
ORF1ab/nsp3763T763MaCgaTg33AY.9.10.000251
ORF1ab/nsp3763T763TacGacT33AY.980.000237
ORF1ab/nsp3763T763TacGacT23B.1.1.100.00223
ORF1ab/nsp3763T763TacGacA13B.1.1.100.001115
ORF1ab/nsp3763T763del1acGac-33B.1.1.2160.002671
ORF1ab/nsp3763T763TacGacT33B.1.1.3060.001315
ORF1ab/nsp3763T763TacGacT33B.1.1.3170.001235
ORF1ab/nsp3763T763TacGacT33B.1.1.330.001263
ORF1ab/nsp3763T763TacGacT33B.1.160.270.045455
ORF1ab/nsp3763T763TacGacA33B.1.177.210.000229
ORF1ab/nsp3763T763TacGacA33B.1.177.600.000655
ORF1ab/nsp3763T763TacGacT33B.1.264.10.142857
ORF1ab/nsp3763T763TacGacA33B.1.3430.0625
ORF1ab/nsp3763T763TacGacT33B.1.5250.000339
ORF1ab/nsp3763T763TacGacA33B.1.5770.002062
ORF1ab/nsp3763T763TacGacT33P.1.20.003468
ORF1ab/nsp3763T763TacGacT33Q.80.000495
ORF1ab/nsp3763T763delACG---220.111111
ORF1ab/nsp3763T763PAcgCcg12All0
ORF1ab/nsp3763T763PAcGCcA12All0
ORF1ab/nsp3763T763TacGacT22AY.10.000791
ORF1ab/nsp3763T763TacGacT12AY.1060.000335
ORF1ab/nsp3763T763TacGacA12AY.1060.000335
ORF1ab/nsp3763T763TacGacT22AY.1140.000462
ORF1ab/nsp3763T763TacGacT22AY.230.000139
ORF1ab/nsp3763T763delACG---22AY.250.000012
ORF1ab/nsp3763T763TacGacT22AY.270.000129
ORF1ab/nsp3763T763TacGacA12AY.350.000233
ORF1ab/nsp3763T763TacGacT12AY.350.000233
ORF1ab/nsp3763T763KaCgaAg22AY.360.000296
ORF1ab/nsp3763T763TacGacT12AY.370.000316
ORF1ab/nsp3763T763TacGacA12AY.370.000316
ORF1ab/nsp3763T763TacGacA22AY.380.000999
ORF1ab/nsp3763T763delACG---22AY.40.000003
ORF1ab/nsp3763T763KaCgaAg22AY.40.000003
ORF1ab/nsp3763T763MaCgaTg22AY.4.20.000043
ORF1ab/nsp3763T763TacGacT22AY.420.00008
ORF1ab/nsp3763T763SAcgTcg22AY.440.000012
ORF1ab/nsp3763T763MaCgaTg22AY.450.000243
ORF1ab/nsp3763T763AAcgGcg22AY.50.000041
ORF1ab/nsp3763T763TacGacA12AY.590.00053
ORF1ab/nsp3763T763TacGacT12AY.590.00053
ORF1ab/nsp3763T763TacGacT22AY.9.20.000073
ORF1ab/nsp3763T763del1acGac-22B.10.000018
ORF1ab/nsp3763T763MaCgaTg22B.1.1.1410.004024
ORF1ab/nsp3763T763TacGacT22B.1.1.2620.030303
ORF1ab/nsp3763T763TacGacT22B.1.1.3180.000604
ORF1ab/nsp3763T763TacGacA12B.1.1.3560.008547
ORF1ab/nsp3763T763TacGacT12B.1.1.3560.008547
ORF1ab/nsp3763T763MaCgaTg22B.1.1.390.001019
ORF1ab/nsp3763T763TacGacT22B.1.1.500.001358
ORF1ab/nsp3763T763MaCgaTg22B.1.1260.002551
ORF1ab/nsp3763T763MaCgaTg22B.1.177.120.000303
ORF1ab/nsp3763T763MaCgaTg22B.1.177.240.002591
ORF1ab/nsp3763T763MaCgaTg22B.1.177.80.001505
ORF1ab/nsp3763T763TacGacT12B.1.2580.000067
ORF1ab/nsp3763T763TacGacA12B.1.2580.000067
ORF1ab/nsp3763T763TacGacA22B.1.3060.011429
ORF1ab/nsp3763T763delACG---22B.1.360.000292
ORF1ab/nsp3763T763MaCgaTg22B.1.3960.001411
ORF1ab/nsp3763T763TacGacT12B.1.4000.000429
ORF1ab/nsp3763T763TacGacC12B.1.4000.000429
ORF1ab/nsp3763T763MaCgaTg22B.1.4160.002538
ORF1ab/nsp3763T763TacGacA22B.1.4660.046512
ORF1ab/nsp3763T763TacGacT22B.1.5750.000607
ORF1ab/nsp3763T763MaCgaTg22B.1.5870.003795
ORF1ab/nsp3763T763SAcgTcg22B.1.617.20.000008
ORF1ab/nsp3763T763TacGacT22B.1.621.10.001012
ORF1ab/nsp3763T763MaCgaTg22B.1.621.10.001012
ORF1ab/nsp3763T763TacGacA22C.300.003454
ORF1ab/nsp3763T763TacGacT22P.1.10.000635
ORF1ab/nsp3763T763TacGacT22P.1.160.000748
ORF1ab/nsp3763T763TacGacT22P.20.000373
ORF1ab/nsp3763T763TacGacT22Q.10.000253
ORF1ab/nsp3763T763delACG---11A0.000387
ORF1ab/nsp3763T763delACG---11A.2.20.001689
ORF1ab/nsp3763T763MaCgaTg11A.30.002096
ORF1ab/nsp3763T763LACgTTg11All0
ORF1ab/nsp3763T763TacGacT11AW.10.003049
ORF1ab/nsp3763T763TacGacA11AY.100.00053
ORF1ab/nsp3763T763MaCgaTg11AY.1020.000027
ORF1ab/nsp3763T763PAcgCcg11AY.1030.000006
ORF1ab/nsp3763T763TacGacC11AY.1050.000643
ORF1ab/nsp3763T763TacGacT11AY.1080.001103
ORF1ab/nsp3763T763TacGacA11AY.1100.000113
ORF1ab/nsp3763T763delACG---11AY.1110.000183
ORF1ab/nsp3763T763MaCgaTg11AY.1130.000142
ORF1ab/nsp3763T763MaCgaTg11AY.1160.000287
ORF1ab/nsp3763T763MaCgaTg11AY.120.000316
ORF1ab/nsp3763T763TacGacT11AY.120.000316
ORF1ab/nsp3763T763del1Acg-cg11AY.1200.000037
ORF1ab/nsp3763T763TacGacT11AY.140.000088
ORF1ab/nsp3763T763TacGacT11AY.180.010101
ORF1ab/nsp3763T763MaCgaTg11AY.200.000039
ORF1ab/nsp3763T763MaCgaTg11AY.230.00007
ORF1ab/nsp3763T763MaCgaTg11AY.240.000431
ORF1ab/nsp3763T763KaCgaAg11AY.250.000006
ORF1ab/nsp3763T763SAcgTcg11AY.250.000006
ORF1ab/nsp3763T763MaCgaTg11AY.290.000016
ORF1ab/nsp3763T763AAcgGcg11AY.30.00001
ORF1ab/nsp3763T763SAcgTcg11AY.30.00001
ORF1ab/nsp3763T763SAcgTcg11AY.3.10.000085
ORF1ab/nsp3763T763MaCgaTg11AY.3.10.000085
ORF1ab/nsp3763T763TacGacT11AY.3.10.000085
ORF1ab/nsp3763T763MaCgaTg11AY.330.000067
ORF1ab/nsp3763T763MaCgaTg11AY.340.000097
ORF1ab/nsp3763T763MaCgaTg11AY.350.000233
ORF1ab/nsp3763T763MaCgaTg11AY.360.000148
ORF1ab/nsp3763T763MaCgaTg11AY.370.000316
ORF1ab/nsp3763T763SAcgTcg11AY.390.000025
ORF1ab/nsp3763T763AAcgGcg11AY.390.000025
ORF1ab/nsp3763T763MaCgaTg11AY.39.10.00004
ORF1ab/nsp3763T763AAcgGcg11AY.4.20.000022
ORF1ab/nsp3763T763AAcgGcg11AY.4.2.10.000149
ORF1ab/nsp3763T763TacGacT11AY.4.40.000409
ORF1ab/nsp3763T763delACG---11AY.4.50.000107
ORF1ab/nsp3763T763TacGacT11AY.410.000294
ORF1ab/nsp3763T763delACG---11AY.430.000004
ORF1ab/nsp3763T763del1acGac-11AY.430.000004
ORF1ab/nsp3763T763IaCGaTT11AY.440.000006
ORF1ab/nsp3763T763PAcGCcA11AY.440.000006
ORF1ab/nsp3763T763AAcgGcg11AY.440.000006
ORF1ab/nsp3763T763TacGacT11AY.46.50.000198
ORF1ab/nsp3763T763MaCgaTg11AY.50.000021
ORF1ab/nsp3763T763TacGacT11AY.5.30.000337
ORF1ab/nsp3763T763TacGacT11AY.500.000799
ORF1ab/nsp3763T763MaCgaTg11AY.520.000814
ORF1ab/nsp3763T763MaCgaTg11AY.540.000095
ORF1ab/nsp3763T763TacGacA11AY.550.000917
ORF1ab/nsp3763T763MaCgaTg11AY.60.000041
ORF1ab/nsp3763T763TacGacA11AY.610.000105
ORF1ab/nsp3763T763TacGacT11AY.670.000464
ORF1ab/nsp3763T763MaCgaTg11AY.70.000196
ORF1ab/nsp3763T763TacGacT11AY.700.000209
ORF1ab/nsp3763T763MaCgaTg11AY.730.000665
ORF1ab/nsp3763T763TacGacT11AY.740.000116
ORF1ab/nsp3763T763TacGacT11AY.75.10.00018
ORF1ab/nsp3763T763delACG---11AY.75.10.00018
ORF1ab/nsp3763T763TacGacA11AY.780.001541
ORF1ab/nsp3763T763TacGacA11AY.790.001211
ORF1ab/nsp3763T763TacGacT11AY.840.000437
ORF1ab/nsp3763T763delACG---11AY.90.000068
ORF1ab/nsp3763T763TacGacA11AY.9.10.000084
ORF1ab/nsp3763T763MaCgaTg11AY.9.20.000037
ORF1ab/nsp3763T763MaCgaTg11AY.980.000079
ORF1ab/nsp3763T763TacGacT11AY.990.001049
ORF1ab/nsp3763T763delACG---11AY.99.10.001553
ORF1ab/nsp3763T763TacGacT11AZ.20.000821
ORF1ab/nsp3763T763AAcgGcg11B0.000128
ORF1ab/nsp3763T763del1acGac-11B0.000128
ORF1ab/nsp3763T763AAcgGcg11B.10.000009
ORF1ab/nsp3763T763KaCgaAg11B.1.10.000018
ORF1ab/nsp3763T763TacGacC11B.1.1.10.000327
ORF1ab/nsp3763T763delACG---11B.1.1.1390.022727
ORF1ab/nsp3763T763delACG---11B.1.1.1420.017544
ORF1ab/nsp3763T763TacGacA11B.1.1.1920.002309
ORF1ab/nsp3763T763MaCgaTg11B.1.1.1980.001468
ORF1ab/nsp3763T763TacGacC11B.1.1.2050.003717
ORF1ab/nsp3763T763delACG---11B.1.1.2180.007692
ORF1ab/nsp3763T763TacGacA11B.1.1.250.000569
ORF1ab/nsp3763T763MaCgaTg11B.1.1.2630.001558
ORF1ab/nsp3763T763TacGacT11B.1.1.2680.014925
ORF1ab/nsp3763T763TacGacT11B.1.1.2770.000759
ORF1ab/nsp3763T763KaCgaAg11B.1.1.2840.000107
ORF1ab/nsp3763T763TacGacA11B.1.1.3030.002762
ORF1ab/nsp3763T763TacGacA11B.1.1.3050.003861
ORF1ab/nsp3763T763TacGacT11B.1.1.3110.000358
ORF1ab/nsp3763T763TacGacT11B.1.1.3120.001912
ORF1ab/nsp3763T763delACG---11B.1.1.3150.008475
ORF1ab/nsp3763T763TacGacT11B.1.1.3240.052632
ORF1ab/nsp3763T763TacGacT11B.1.1.3690.000446
ORF1ab/nsp3763T763delACG---11B.1.1.370.000193
ORF1ab/nsp3763T763TacGacT11B.1.1.3720.000689
ORF1ab/nsp3763T763MaCgaTg11B.1.1.3750.011905
ORF1ab/nsp3763T763TacGacT11B.1.1.390.00051
ORF1ab/nsp3763T763TacGacT11B.1.1.40.002976
ORF1ab/nsp3763T763TacGacT11B.1.1.4340.000349
ORF1ab/nsp3763T763MaCgaTg11B.1.1.630.000386
ORF1ab/nsp3763T763TacGacT11B.1.1.630.000386
ORF1ab/nsp3763T763del1aCGaT-11B.1.1.70.000001
ORF1ab/nsp3763T763MaCgaTg11B.1.1.700.000341
ORF1ab/nsp3763T763delACG---11B.1.1.700.000341
ORF1ab/nsp3763T763TacGacT11B.1.1.700.000341
ORF1ab/nsp3763T763MaCgaTg11B.1.120.008
ORF1ab/nsp3763T763delACG---11B.1.1400.018868
ORF1ab/nsp3763T763MaCgaTg11B.1.160.320.004292
ORF1ab/nsp3763T763TacGacT11B.1.1640.014925
ORF1ab/nsp3763T763AAcgGcg11B.1.1770.000013
ORF1ab/nsp3763T763AAcgGcg11B.1.177.210.000076
ORF1ab/nsp3763T763TacGacT11B.1.177.450.000381
ORF1ab/nsp3763T763delACG---11B.1.177.540.000606
ORF1ab/nsp3763T763delACG---11B.1.177.620.001192
ORF1ab/nsp3763T763delACG---11B.1.177.630.002703
ORF1ab/nsp3763T763delACG---11B.1.177.680.015152
ORF1ab/nsp3763T763TacGacT11B.1.177.730.000566
ORF1ab/nsp3763T763TacGacT11B.1.177.830.001481
ORF1ab/nsp3763T763MaCgaTg11B.1.177.860.000183
ORF1ab/nsp3763T763TacGacT11B.1.177.880.012346
ORF1ab/nsp3763T763AAcgGcg11B.1.20.000009
ORF1ab/nsp3763T763MaCgaTg11B.1.214.20.0006
ORF1ab/nsp3763T763TacGacA11B.1.214.30.007143
ORF1ab/nsp3763T763MaCgaTg11B.1.221.30.000833
ORF1ab/nsp3763T763MaCgaTg11B.1.2340.000132
ORF1ab/nsp3763T763MaCgaTg11B.1.2400.000216
ORF1ab/nsp3763T763MaCgaTg11B.1.2410.000812
ORF1ab/nsp3763T763MaCgaTg11B.1.2580.000067
ORF1ab/nsp3763T763TacGacT11B.1.258.110.000396
ORF1ab/nsp3763T763MaCgaTg11B.1.258.110.000396
ORF1ab/nsp3763T763MaCgaTg11B.1.258.140.00098
ORF1ab/nsp3763T763MaCgaTg11B.1.258.70.001912
ORF1ab/nsp3763T763AAcgGcg11B.1.2650.001271
ORF1ab/nsp3763T763TacGacT11B.1.2730.012987
ORF1ab/nsp3763T763TacGacA11B.1.2790.000514
ORF1ab/nsp3763T763delACG---11B.1.3190.003049
ORF1ab/nsp3763T763TacGacT11B.1.3200.001245
ORF1ab/nsp3763T763del1acGac-11B.1.360.000146
ORF1ab/nsp3763T763del1acGac-11B.1.36.80.001
ORF1ab/nsp3763T763TacGacT11B.1.3600.012658
ORF1ab/nsp3763T763TacGacT11B.1.3750.00082
ORF1ab/nsp3763T763MaCgaTg11B.1.3910.001127
ORF1ab/nsp3763T763TacGacA11B.1.3960.000706
ORF1ab/nsp3763T763delACG---11B.1.4090.000781
ORF1ab/nsp3763T763TacGacT11B.1.4110.003704
ORF1ab/nsp3763T763delACG---11B.1.4150.014286
ORF1ab/nsp3763T763TacGacC11B.1.4530.003236
ORF1ab/nsp3763T763TacGacA11B.1.4590.004082
ORF1ab/nsp3763T763TacGacT11B.1.4680.005714
ORF1ab/nsp3763T763TacGacT11B.1.4700.001404
ORF1ab/nsp3763T763MaCgaTg11B.1.4970.000315
ORF1ab/nsp3763T763MaCgaTg11B.1.5090.000866
ORF1ab/nsp3763T763MaCgaTg11B.1.5610.000397
ORF1ab/nsp3763T763MaCgaTg11B.1.5820.000491
ORF1ab/nsp3763T763MaCgaTg11B.1.5950.000261
ORF1ab/nsp3763T763TacGacT11B.1.595.40.007299
ORF1ab/nsp3763T763delACG---11B.1.5960.000087
ORF1ab/nsp3763T763MaCgaTg11B.1.6090.000479
ORF1ab/nsp3763T763delACG---11B.1.617.10.000129
ORF1ab/nsp3763T763KaCgaAg11B.1.617.20.000004
ORF1ab/nsp3763T763delACG---11B.1.617.20.000004
ORF1ab/nsp3763T763TacGacT11B.1.617.30.002985
ORF1ab/nsp3763T763AAcgGcg11B.1.6210.000089
ORF1ab/nsp3763T763SAcgTcg11B.1.6300.005236
ORF1ab/nsp3763T763LACgTTg11B.1.6300.005236
ORF1ab/nsp3763T763MaCgaTg11B.1.6300.005236
ORF1ab/nsp3763T763TacGacT11B.1.6330.041667
ORF1ab/nsp3763T763AAcgGcg11B.1.6370.000073
ORF1ab/nsp3763T763delACG---11B.150.017544
ORF1ab/nsp3763T763TacGacT11B.230.002924
ORF1ab/nsp3763T763TacGacA11B.310.003731
ORF1ab/nsp3763T763MaCgaTg11B.550.00295
ORF1ab/nsp3763T763TacGacT11C.10.002392
ORF1ab/nsp3763T763MaCgaTg11C.160.00106
ORF1ab/nsp3763T763TacGacT11C.360.000911
ORF1ab/nsp3763T763delACG---11C.370.000116
ORF1ab/nsp3763T763MaCgaTg11C.370.000116
ORF1ab/nsp3763T763TacGacA11C.40.01
ORF1ab/nsp3763T763TacGacT11N.90.005952
ORF1ab/nsp3763T763AAcgGcg11P.10.000016
ORF1ab/nsp3763T763AAcgGcg11P.1.10.000318
ORF1ab/nsp3763T763TacGacA11P.1.120.000484
ORF1ab/nsp3763T763TacGacT11P.1.140.000048
ORF1ab/nsp3763T763MaCgaTg11P.1.150.000232
ORF1ab/nsp3763T763TacGacT11P.1.70.000319
ORF1ab/nsp3763T763MaCgaTg11P.30.001595
ORF1ab/nsp3763T763TacGacT11P.30.001595
ORF1ab/nsp3763T763TacGacA11P.70.004367
ORF1ab/nsp3763T763MaCgaTg11Q.80.000165
ORF1ab/nsp3763T763MaCgaTg11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.