CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 763 | T763T | T1581T | syn | acG | acT | 7532 | 6869 | 0.911976 | 5006-5008 |
ORF1ab/nsp3 | 763 | T763T | T1581T | syn | acG | acA | 7532 | 582 | 0.0772703 | 5006-5008 |
ORF1ab/nsp3 | 763 | T763T | T1581T | syn | acG | acC | 7532 | 81 | 0.0107541 | 5006-5008 |
ORF1ab/nsp3 | 763 | T763M | T1581M | nonsyn | aCg | aTg | 1587 | 1587 | 1 | 5006-5008 |
ORF1ab/nsp3 | 763 | T763A | T1581A | nonsyn | Acg | Gcg | 139 | 139 | 1 | 5006-5008 |
ORF1ab/nsp3 | 763 | T763del | T1581del | del | ACG | --- | 76 | 76 | 1 | 5006-5008 |
ORF1ab/nsp3 | 763 | T763K | T1581K | nonsyn | aCg | aAg | 14 | 14 | 1 | 5006-5008 |
ORF1ab/nsp3 | 763 | T763del1 | T1581del1 | del | acG | ac- | 11 | 9 | 0.818182 | 5006-5008 |
ORF1ab/nsp3 | 763 | T763del1 | T1581del1 | del | aCG | aT- | 11 | 1 | 0.0909091 | 5006-5008 |
ORF1ab/nsp3 | 763 | T763del1 | T1581del1 | del | Acg | -cg | 11 | 1 | 0.0909091 | 5006-5008 |
ORF1ab/nsp3 | 763 | T763S | T1581S | nonsyn | Acg | Tcg | 9 | 9 | 1 | 5006-5008 |
ORF1ab/nsp3 | 763 | T763I | T1581I | nonsyn | aCG | aTT | 6 | 6 | 1 | 5006-5008 |
ORF1ab/nsp3 | 763 | T763P | T1581P | nonsyn | Acg | Ccg | 2 | 1 | 0.5 | 5006-5008 |
ORF1ab/nsp3 | 763 | T763P | T1581P | nonsyn | AcG | CcA | 2 | 1 | 0.5 | 5006-5008 |
ORF1ab/nsp3 | 763 | T763L | T1581L | nonsyn | ACg | TTg | 1 | 1 | 1 | 5006-5008 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 6869 | 7532 | All | 0.001314 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 582 | 7532 | All | 0.000111 |
ORF1ab/nsp3 | 763 | T763T | acG | acC | 81 | 7532 | All | 0.000015 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1587 | 1587 | All | 0.000304 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1556 | 1556 | B.1.619.1 | 0.998076 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1109 | 1109 | B.1.619 | 0.966028 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 728 | 734 | AY.44 | 0.004431 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 4 | 734 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 763 | T763T | acG | acC | 2 | 734 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 665 | 665 | B.1.1.433 | 0.947293 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 519 | 615 | B.1.1.7 | 0.000465 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 86 | 615 | B.1.1.7 | 0.000077 |
ORF1ab/nsp3 | 763 | T763T | acG | acC | 10 | 615 | B.1.1.7 | 0.000009 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 384 | 424 | AY.4 | 0.000598 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 22 | 424 | AY.4 | 0.000034 |
ORF1ab/nsp3 | 763 | T763T | acG | acC | 18 | 424 | AY.4 | 0.000028 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 332 | 337 | AY.16 | 0.126044 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 5 | 337 | AY.16 | 0.001898 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 226 | 287 | B.1.617.2 | 0.000851 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 54 | 287 | B.1.617.2 | 0.000203 |
ORF1ab/nsp3 | 763 | T763T | acG | acC | 7 | 287 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 232 | 253 | AY.43 | 0.001028 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 18 | 253 | AY.43 | 0.00008 |
ORF1ab/nsp3 | 763 | T763T | acG | acC | 3 | 253 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 142 | 232 | B.1.177 | 0.00187 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 88 | 232 | B.1.177 | 0.001159 |
ORF1ab/nsp3 | 763 | T763T | acG | acC | 2 | 232 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 202 | 202 | AY.42 | 0.008126 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 181 | 181 | B.1.1.7 | 0.000162 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 175 | 175 | B.1.1.157 | 0.159817 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 128 | 159 | B.1.2 | 0.001127 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 29 | 159 | B.1.2 | 0.000255 |
ORF1ab/nsp3 | 763 | T763T | acG | acC | 2 | 159 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 763 | T763A | Acg | Gcg | 139 | 139 | All | 0.000027 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 110 | 110 | AY.4 | 0.000171 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 89 | 89 | B.1.36.2 | 0.956989 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 76 | 76 | All | 0.000015 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 68 | 74 | B.1 | 0.000623 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 6 | 74 | B.1 | 0.000055 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 46 | 71 | AY.25 | 0.000277 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 13 | 71 | AY.25 | 0.000078 |
ORF1ab/nsp3 | 763 | T763T | acG | acC | 12 | 71 | AY.25 | 0.000072 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 70 | 70 | AY.39.1 | 0.002773 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 64 | 64 | AY.99.2 | 0.005898 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 55 | 59 | AY.103 | 0.000341 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 4 | 59 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 43 | 53 | B.1.526 | 0.001011 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 10 | 53 | B.1.526 | 0.000235 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 46 | 47 | AY.111 | 0.008425 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 47 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 44 | 45 | AY.33 | 0.002938 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 45 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 763 | T763A | Acg | Gcg | 45 | 45 | B.1.1.7 | 0.00004 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 38 | 42 | AY.3 | 0.000378 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 3 | 42 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 763 | T763T | acG | acC | 1 | 42 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 21 | 41 | P.1 | 0.000331 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 16 | 41 | P.1 | 0.000252 |
ORF1ab/nsp3 | 763 | T763T | acG | acC | 4 | 41 | P.1 | 0.000063 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 38 | 40 | AY.47 | 0.001182 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 2 | 40 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 36 | 38 | B.1.1 | 0.000653 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 2 | 38 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 36 | 37 | AY.26 | 0.001019 |
ORF1ab/nsp3 | 763 | T763T | acG | acC | 1 | 37 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 763 | T763A | Acg | Gcg | 35 | 35 | AY.103 | 0.000217 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 34 | 34 | B.1.596 | 0.002963 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 33 | 34 | B.1.596 | 0.002876 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 34 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 29 | 29 | AY.95 | 0.02207 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 29 | 29 | B.1.617.2 | 0.000109 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 21 | 28 | B.1.429 | 0.000494 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 6 | 28 | B.1.429 | 0.000141 |
ORF1ab/nsp3 | 763 | T763T | acG | acC | 1 | 28 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 27 | 27 | AY.46.6 | 0.00195 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 25 | 25 | B.1 | 0.000229 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 23 | 25 | B.1.351 | 0.000684 |
ORF1ab/nsp3 | 763 | T763T | acG | acC | 1 | 25 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 25 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 25 | 25 | B.1.36 | 0.003648 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 24 | 24 | B.1.2 | 0.000211 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 23 | 23 | B.1.1.7 | 0.000021 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 22 | 22 | AY.103 | 0.000137 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 19 | 22 | AY.120 | 0.000706 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 3 | 22 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 22 | 22 | AY.92 | 0.00632 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 19 | 19 | AY.43 | 0.000084 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 19 | 19 | B.1.1.214 | 0.001054 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 16 | 16 | AY.44 | 0.000097 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 16 | 16 | B.1.1 | 0.00029 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 13 | 16 | B.1.160 | 0.000405 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 3 | 16 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 12 | 15 | AY.102 | 0.000318 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 3 | 15 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 763 | T763K | aCg | aAg | 14 | 14 | All | 0.000003 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 9 | 13 | AY.121 | 0.001218 |
ORF1ab/nsp3 | 763 | T763T | acG | acC | 4 | 13 | AY.121 | 0.000541 |
ORF1ab/nsp3 | 763 | T763A | Acg | Gcg | 13 | 13 | AY.4 | 0.00002 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 11 | 12 | B.1.234 | 0.001451 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 12 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 11 | 12 | B.1.427 | 0.000555 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 12 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 12 | 12 | B.1.595 | 0.003132 |
ORF1ab/nsp3 | 763 | T763del1 | acG | ac- | 9 | 11 | All | 0.000002 |
ORF1ab/nsp3 | 763 | T763del1 | Acg | -cg | 1 | 11 | All | 0 |
ORF1ab/nsp3 | 763 | T763del1 | aCG | aT- | 1 | 11 | All | 0 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 9 | 11 | AY.119 | 0.000318 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 2 | 11 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 11 | 11 | B.1.1.216 | 0.009795 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 11 | 11 | B.1.1.28 | 0.003424 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 11 | 11 | B.1.1.333 | 0.011841 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 10 | 11 | B.1.139 | 0.007331 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 11 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 11 | 11 | B.1.369 | 0.003137 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 11 | 11 | P.1 | 0.000173 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 7 | 10 | AY.100 | 0.000322 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 3 | 10 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 7 | 10 | AY.20 | 0.000272 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 3 | 10 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 10 | 10 | AY.98.1 | 0.000484 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 10 | 10 | B | 0.001278 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 10 | 10 | B.1.177.40 | 0.051546 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 10 | 10 | B.1.427 | 0.000505 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 10 | 10 | B.1.429 | 0.000235 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 10 | 10 | B.1.637 | 0.000731 |
ORF1ab/nsp3 | 763 | T763S | Acg | Tcg | 9 | 9 | All | 0.000002 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 8 | 9 | AY.6 | 0.000329 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 9 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 7 | 9 | B.1.621 | 0.00062 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 2 | 9 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 763 | T763A | Acg | Gcg | 9 | 9 | B.1.621.1 | 0.004552 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 3 | 9 | D.2 | 0.000225 |
ORF1ab/nsp3 | 763 | T763T | acG | acC | 3 | 9 | D.2 | 0.000225 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 3 | 9 | D.2 | 0.000225 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 7 | 8 | AY.29 | 0.00011 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 8 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 5 | 8 | AY.5 | 0.000103 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 3 | 8 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 5 | 8 | B.1.466.2 | 0.001956 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 3 | 8 | B.1.466.2 | 0.001174 |
ORF1ab/nsp3 | 763 | T763A | Acg | Gcg | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 7 | 8 | C.37 | 0.000812 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 8 | C.37 | 0.000116 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 4 | 7 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 2 | 7 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 763 | T763T | acG | acC | 1 | 7 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 7 | 7 | AY.46.4 | 0.001152 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 7 | 7 | B.1.1.222 | 0.001428 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 5 | 7 | B.1.243 | 0.000348 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 2 | 7 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 7 | 7 | B.1.258.14 | 0.006863 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 7 | 7 | B.1.276 | 0.118644 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 7 | 7 | B.1.351 | 0.000208 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 7 | 7 | B.1.36.17 | 0.003458 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 6 | 7 | B.1.637 | 0.000438 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 7 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 763 | T763I | aCG | aTT | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 5 | 6 | AY.13 | 0.000805 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 6 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 4 | 6 | AY.53 | 0.00115 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 2 | 6 | AY.53 | 0.000575 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 6 | 6 | AY.75 | 0.000336 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 5 | 6 | AY.75 | 0.00028 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 6 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 4 | 6 | B.1.1.153 | 0.004381 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 2 | 6 | B.1.1.153 | 0.002191 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 6 | 6 | B.1.1.222 | 0.001224 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 4 | 6 | B.1.1.519 | 0.000159 |
ORF1ab/nsp3 | 763 | T763T | acG | acC | 1 | 6 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 6 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 763 | T763K | aCg | aAg | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 5 | 6 | B.1.104 | 0.01845 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 6 | B.1.104 | 0.00369 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 6 | 6 | B.1.177.87 | 0.004367 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 5 | 6 | B.1.456 | 0.01634 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 6 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 5 | 5 | A.2.5 | 0.002495 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 5 | 5 | AE.8 | 0.002445 |
ORF1ab/nsp3 | 763 | T763A | Acg | Gcg | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 5 | 5 | AY.36 | 0.000741 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp3 | 763 | T763I | aCG | aTT | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 4 | 5 | AY.45 | 0.000487 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 5 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 5 | 5 | AY.48 | 0.002326 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 5 | 5 | B | 0.000639 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 5 | 5 | B.1.111 | 0.005875 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 3 | 5 | B.1.36.8 | 0.003 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 2 | 5 | B.1.36.8 | 0.002 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 5 | 5 | B.1.397 | 0.024272 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 5 | 5 | B.1.422 | 0.004062 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 5 | 5 | B.1.620 | 0.00473 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 5 | 5 | K.2 | 0.2 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 5 | 5 | R.1 | 0.00045 |
ORF1ab/nsp3 | 763 | T763T | acG | acC | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 4 | 4 | AY.19 | 0.004561 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 3 | 4 | AY.24 | 0.001293 |
ORF1ab/nsp3 | 763 | T763T | acG | acC | 1 | 4 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 2 | 4 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 2 | 4 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 3 | 4 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 4 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 2 | 4 | AY.62 | 0.000871 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 2 | 4 | AY.62 | 0.000871 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 3 | 4 | AY.9 | 0.000203 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 4 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 4 | 4 | B.1.1.328 | 0.067797 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 4 | 4 | B.1.177.33 | 0.006579 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 3 | 4 | B.1.36.29 | 0.001552 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 4 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 4 | 4 | B.1.480 | 0.00995 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 4 | 4 | B.6 | 0.00364 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp3 | 763 | T763A | Acg | Gcg | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 3 | 3 | A | 0.001161 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 3 | 3 | AY.109 | 0.002219 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 2 | 3 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 3 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 2 | 3 | AY.2 | 0.000712 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 3 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp3 | 763 | T763A | Acg | Gcg | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 3 | 3 | AY.65 | 0.001599 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 3 | 3 | AY.69 | 0.00056 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 3 | 3 | AY.77 | 0.003382 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 2 | 3 | B.1.1.10 | 0.00223 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 3 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 763 | T763del1 | acG | ac- | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 3 | 3 | B.1.160.27 | 0.045455 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 3 | 3 | B.1.177.21 | 0.000229 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 3 | 3 | B.1.177.60 | 0.000655 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 3 | 3 | B.1.264.1 | 0.142857 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 3 | 3 | B.1.343 | 0.0625 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 3 | 3 | B.1.577 | 0.002062 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 3 | 3 | P.1.2 | 0.003468 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 763 | T763P | Acg | Ccg | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 763 | T763P | AcG | CcA | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 2 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 2 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 2 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 2 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 763 | T763K | aCg | aAg | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 2 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 2 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 763 | T763K | aCg | aAg | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 763 | T763S | Acg | Tcg | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 763 | T763A | Acg | Gcg | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 2 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 2 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 763 | T763del1 | acG | ac- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 2 | 2 | B.1.1.262 | 0.030303 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 2 | B.1.1.356 | 0.008547 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 2 | B.1.1.356 | 0.008547 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 2 | 2 | B.1.126 | 0.002551 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 2 | 2 | B.1.177.24 | 0.002591 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 2 | 2 | B.1.177.8 | 0.001505 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 2 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 2 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 2 | 2 | B.1.306 | 0.011429 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 2 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 763 | T763T | acG | acC | 1 | 2 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 2 | 2 | B.1.466 | 0.046512 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 2 | 2 | B.1.587 | 0.003795 |
ORF1ab/nsp3 | 763 | T763S | Acg | Tcg | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 2 | 2 | C.30 | 0.003454 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp3 | 763 | T763L | ACg | TTg | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 763 | T763P | Acg | Ccg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 763 | T763T | acG | acC | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 763 | T763del1 | Acg | -cg | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | AY.18 | 0.010101 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 763 | T763K | aCg | aAg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 763 | T763S | Acg | Tcg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 763 | T763A | Acg | Gcg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 763 | T763S | Acg | Tcg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 763 | T763S | Acg | Tcg | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 763 | T763S | Acg | Tcg | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 763 | T763A | Acg | Gcg | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 763 | T763A | Acg | Gcg | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 763 | T763A | Acg | Gcg | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 763 | T763del1 | acG | ac- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 763 | T763I | aCG | aTT | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 763 | T763P | AcG | CcA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 763 | T763A | Acg | Gcg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 763 | T763A | Acg | Gcg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 763 | T763del1 | acG | ac- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 763 | T763A | Acg | Gcg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 763 | T763K | aCg | aAg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 763 | T763T | acG | acC | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp3 | 763 | T763T | acG | acC | 1 | 1 | B.1.1.205 | 0.003717 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 1 | 1 | B.1.1.218 | 0.007692 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.1.268 | 0.014925 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 763 | T763K | aCg | aAg | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.1.324 | 0.052632 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.1.375 | 0.011905 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.1.4 | 0.002976 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 763 | T763del1 | aCG | aT- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.12 | 0.008 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.160.32 | 0.004292 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.164 | 0.014925 |
ORF1ab/nsp3 | 763 | T763A | Acg | Gcg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 763 | T763A | Acg | Gcg | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.177.88 | 0.012346 |
ORF1ab/nsp3 | 763 | T763A | Acg | Gcg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 1 | B.1.214.3 | 0.007143 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.258.7 | 0.001912 |
ORF1ab/nsp3 | 763 | T763A | Acg | Gcg | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.273 | 0.012987 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp3 | 763 | T763del1 | acG | ac- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 763 | T763del1 | acG | ac- | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.360 | 0.012658 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 763 | T763T | acG | acC | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.595.4 | 0.007299 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 763 | T763K | aCg | aAg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp3 | 763 | T763A | Acg | Gcg | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 763 | T763S | Acg | Tcg | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 763 | T763L | ACg | TTg | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.1.633 | 0.041667 |
ORF1ab/nsp3 | 763 | T763A | Acg | Gcg | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 763 | T763del | ACG | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 1 | C.4 | 0.01 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp3 | 763 | T763A | Acg | Gcg | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 763 | T763A | Acg | Gcg | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 763 | T763T | acG | acT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 763 | T763T | acG | acA | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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