CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 757

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3757D757DD1575DsyngaCgaT1101110114988-4990
ORF1ab/nsp3757D757delD1575deldelGAC---707014988-4990
ORF1ab/nsp3757D757ED1575EnonsyngaCgaA29270.9310354988-4990
ORF1ab/nsp3757D757ED1575EnonsyngaCgaG2920.06896554988-4990
ORF1ab/nsp3757D757HD1575HnonsynGacCac212114988-4990
ORF1ab/nsp3757D757YD1575YnonsynGacTac13120.9230774988-4990
ORF1ab/nsp3757D757YD1575YnonsynGaCTaT1310.07692314988-4990
ORF1ab/nsp3757D757ND1575NnonsynGacAac740.5714294988-4990
ORF1ab/nsp3757D757ND1575NnonsynGaCAaT730.4285714988-4990
ORF1ab/nsp3757D757AD1575AnonsyngAcgCc4414988-4990
ORF1ab/nsp3757D757del2D1575del2delgACg--430.754988-4990
ORF1ab/nsp3757D757del2D1575del2delGAC--N410.254988-4990
ORF1ab/nsp3757D757GD1575GnonsyngAcgGc3314988-4990
ORF1ab/nsp3757D757del1D1575del1delGac-ac320.6666674988-4990
ORF1ab/nsp3757D757del1D1575del1delgaCga-310.3333334988-4990
ORF1ab/nsp3757D757SD1575SnonsynGAcAGc2214988-4990
ORF1ab/nsp3757D757LD1575LnonsynGACCTT2214988-4990
ORF1ab/nsp3757D757VD1575VnonsyngACgTA210.54988-4990
ORF1ab/nsp3757D757VD1575VnonsyngAcgTc210.54988-4990
ORF1ab/nsp3757D757TD1575TnonsynGAcACc1114988-4990

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3757D757DgaCgaT11011101All0.000211
ORF1ab/nsp3757D757DgaCgaT343343B.1.1.70.000307
ORF1ab/nsp3757D757DgaCgaT118118AY.40.000184
ORF1ab/nsp3757D757DgaCgaT7272B.1.20.000634
ORF1ab/nsp3757D757delGAC---7070All0.000013
ORF1ab/nsp3757D757DgaCgaT6767B.1.617.20.000252
ORF1ab/nsp3757D757DgaCgaT3636AY.430.000159
ORF1ab/nsp3757D757DgaCgaT3636AY.440.000219
ORF1ab/nsp3757D757DgaCgaT3333B.1.2580.002196
ORF1ab/nsp3757D757delGAC---3030B.1.1.70.000027
ORF1ab/nsp3757D757EgaCgaA2729All0.000005
ORF1ab/nsp3757D757EgaCgaG229All0
ORF1ab/nsp3757D757DgaCgaT2929B.1.1.5250.15847
ORF1ab/nsp3757D757HGacCac2121All0.000004
ORF1ab/nsp3757D757DgaCgaT2020B.1.1770.000263
ORF1ab/nsp3757D757DgaCgaT1919B.1.6210.001682
ORF1ab/nsp3757D757DgaCgaT1818AY.470.00056
ORF1ab/nsp3757D757DgaCgaT1717AY.1030.000106
ORF1ab/nsp3757D757DgaCgaT1717AY.980.001343
ORF1ab/nsp3757D757DgaCgaT1616AY.46.60.001155
ORF1ab/nsp3757D757DgaCgaT1515B.10.000137
ORF1ab/nsp3757D757YGacTac1213All0.000002
ORF1ab/nsp3757D757YGaCTaT113All0
ORF1ab/nsp3757D757EgaCgaA1313AY.46.60.000939
ORF1ab/nsp3757D757DgaCgaT1313B.1.10.000236
ORF1ab/nsp3757D757DgaCgaT1010B.1.1.330.004209
ORF1ab/nsp3757D757HGacCac1010B.1.1.70.000009
ORF1ab/nsp3757D757DgaCgaT1010B.1.4761
ORF1ab/nsp3757D757DgaCgaT99AY.30.00009
ORF1ab/nsp3757D757HGacCac99B.1.5250.001018
ORF1ab/nsp3757D757DgaCgaT99B.1.5260.000212
ORF1ab/nsp3757D757DgaCgaT88AY.1010.003923
ORF1ab/nsp3757D757DgaCgaT88AY.250.000048
ORF1ab/nsp3757D757NGacAac47All0.000001
ORF1ab/nsp3757D757NGaCAaT37All0.000001
ORF1ab/nsp3757D757DgaCgaT77AY.200.000272
ORF1ab/nsp3757D757DgaCgaT77B.1.1.2200.013011
ORF1ab/nsp3757D757DgaCgaT77B.1.3460.009174
ORF1ab/nsp3757D757DgaCgaT66AY.1190.000212
ORF1ab/nsp3757D757DgaCgaT66B.1.1.3480.004777
ORF1ab/nsp3757D757AgAcgCc44All0.000001
ORF1ab/nsp3757D757del2gACg--34All0.000001
ORF1ab/nsp3757D757del2GAC--N14All0
ORF1ab/nsp3757D757EgaCgaA44AY.430.000018
ORF1ab/nsp3757D757DgaCgaT44AY.98.10.000194
ORF1ab/nsp3757D757delGAC---44B.1.1770.000053
ORF1ab/nsp3757D757DgaCgaT44B.1.4270.000202
ORF1ab/nsp3757D757DgaCgaT44B.1.4290.000094
ORF1ab/nsp3757D757DgaCgaT44B.1.5960.000349
ORF1ab/nsp3757D757DgaCgaT44P.10.000063
ORF1ab/nsp3757D757DgaCgaT33A.10.000846
ORF1ab/nsp3757D757GgAcgGc33All0.000001
ORF1ab/nsp3757D757del1Gac-ac23All0
ORF1ab/nsp3757D757del1gaCga-13All0
ORF1ab/nsp3757D757DgaCgaT33AY.1020.00008
ORF1ab/nsp3757D757DgaCgaT33AY.1080.003308
ORF1ab/nsp3757D757DgaCgaT33AY.1180.000188
ORF1ab/nsp3757D757DgaCgaT33AY.290.000047
ORF1ab/nsp3757D757delGAC---33AY.40.000005
ORF1ab/nsp3757D757DgaCgaT33AY.420.000121
ORF1ab/nsp3757D757EgaCgaA33AY.440.000018
ORF1ab/nsp3757D757DgaCgaT33AY.450.000365
ORF1ab/nsp3757D757DgaCgaT33AY.46.50.000595
ORF1ab/nsp3757D757DgaCgaT33AY.50.000062
ORF1ab/nsp3757D757DgaCgaT33AY.99.20.000276
ORF1ab/nsp3757D757NGaCAaT23B.1.1.70.000002
ORF1ab/nsp3757D757NGacAac13B.1.1.70.000001
ORF1ab/nsp3757D757DgaCgaT33B.1.177.600.000655
ORF1ab/nsp3757D757DgaCgaT33B.1.5010.022059
ORF1ab/nsp3757D757DgaCgaT33B.1.617.10.000387
ORF1ab/nsp3757D757DgaCgaT33D.20.000225
ORF1ab/nsp3757D757DgaCgaT33P.30.004785
ORF1ab/nsp3757D757LGACCTT220.111111
ORF1ab/nsp3757D757delGAC---220.111111
ORF1ab/nsp3757D757VgAcgTc120.055556
ORF1ab/nsp3757D757YGaCTaT120.055556
ORF1ab/nsp3757D757NGaCAaT120.055556
ORF1ab/nsp3757D757NGacAac120.055556
ORF1ab/nsp3757D757VgACgTA120.055556
ORF1ab/nsp3757D757YGacTac120.055556
ORF1ab/nsp3757D757SGAcAGc22All0
ORF1ab/nsp3757D757LGACCTT22All0
ORF1ab/nsp3757D757VgACgTA12All0
ORF1ab/nsp3757D757VgAcgTc12All0
ORF1ab/nsp3757D757EgaCgaA22AY.1000.000092
ORF1ab/nsp3757D757DgaCgaT22AY.1200.000074
ORF1ab/nsp3757D757DgaCgaT22AY.1210.000271
ORF1ab/nsp3757D757DgaCgaT22AY.140.000176
ORF1ab/nsp3757D757DgaCgaT22AY.260.000057
ORF1ab/nsp3757D757DgaCgaT22AY.300.000791
ORF1ab/nsp3757D757DgaCgaT22AY.330.000134
ORF1ab/nsp3757D757DgaCgaT22AY.380.000999
ORF1ab/nsp3757D757DgaCgaT22AY.4.20.000043
ORF1ab/nsp3757D757delGAC---22AY.430.000009
ORF1ab/nsp3757D757DgaCgaT22AY.46.30.001867
ORF1ab/nsp3757D757EgaCgaG22AY.50.000041
ORF1ab/nsp3757D757YGacTac22B.10.000018
ORF1ab/nsp3757D757delGAC---22B.10.000018
ORF1ab/nsp3757D757DgaCgaT22B.1.1.1610.007067
ORF1ab/nsp3757D757DgaCgaT22B.1.1.1700.002494
ORF1ab/nsp3757D757DgaCgaT22B.1.1.2220.000408
ORF1ab/nsp3757D757del1gaCga-12B.1.1.70.000001
ORF1ab/nsp3757D757del1Gac-ac12B.1.1.70.000001
ORF1ab/nsp3757D757DgaCgaT22B.1.1600.000062
ORF1ab/nsp3757D757delGAC---22B.1.177.630.005405
ORF1ab/nsp3757D757DgaCgaT22B.1.2220.003384
ORF1ab/nsp3757D757DgaCgaT22B.1.258.110.000793
ORF1ab/nsp3757D757DgaCgaT22B.1.3510.000059
ORF1ab/nsp3757D757delGAC---22B.1.360.000292
ORF1ab/nsp3757D757DgaCgaT22B.1.36.180.00084
ORF1ab/nsp3757D757DgaCgaT22B.1.5950.000522
ORF1ab/nsp3757D757DgaCgaT22B.1.6200.001892
ORF1ab/nsp3757D757EgaCgaA110.055556
ORF1ab/nsp3757D757DgaCgaT110.055556
ORF1ab/nsp3757D757delGAC---11A0.000387
ORF1ab/nsp3757D757delGAC---11A.2.20.001689
ORF1ab/nsp3757D757DgaCgaT11AD.20.000219
ORF1ab/nsp3757D757TGAcACc11All0
ORF1ab/nsp3757D757DgaCgaT11AY.100.00053
ORF1ab/nsp3757D757NGacAac11AY.1030.000006
ORF1ab/nsp3757D757DgaCgaT11AY.1070.000466
ORF1ab/nsp3757D757delGAC---11AY.1110.000183
ORF1ab/nsp3757D757DgaCgaT11AY.120.000316
ORF1ab/nsp3757D757NGacAac11AY.1200.000037
ORF1ab/nsp3757D757TGAcACc11AY.120.10.000321
ORF1ab/nsp3757D757DgaCgaT11AY.16.10.00047
ORF1ab/nsp3757D757DgaCgaT11AY.230.00007
ORF1ab/nsp3757D757YGacTac11AY.250.000006
ORF1ab/nsp3757D757delGAC---11AY.360.000148
ORF1ab/nsp3757D757DgaCgaT11AY.390.000025
ORF1ab/nsp3757D757delGAC---11AY.4.50.000107
ORF1ab/nsp3757D757SGAcAGc11AY.440.000006
ORF1ab/nsp3757D757EgaCgaA11AY.450.000122
ORF1ab/nsp3757D757DgaCgaT11AY.5.20.002463
ORF1ab/nsp3757D757DgaCgaT11AY.5.30.000337
ORF1ab/nsp3757D757EgaCgaA11AY.5.40.000277
ORF1ab/nsp3757D757DgaCgaT11AY.590.00053
ORF1ab/nsp3757D757DgaCgaT11AY.60.000041
ORF1ab/nsp3757D757DgaCgaT11AY.610.000105
ORF1ab/nsp3757D757DgaCgaT11AY.640.000595
ORF1ab/nsp3757D757DgaCgaT11AY.680.000274
ORF1ab/nsp3757D757DgaCgaT11AY.7.10.000113
ORF1ab/nsp3757D757delGAC---11AY.720.001361
ORF1ab/nsp3757D757DgaCgaT11AY.75.10.00018
ORF1ab/nsp3757D757DgaCgaT11AY.90.000068
ORF1ab/nsp3757D757DgaCgaT11AY.9.20.000037
ORF1ab/nsp3757D757DgaCgaT11AY.960.002075
ORF1ab/nsp3757D757delGAC---11AY.99.10.001553
ORF1ab/nsp3757D757SGAcAGc11B0.000128
ORF1ab/nsp3757D757EgaCgaA11B.10.000009
ORF1ab/nsp3757D757del2gACg--11B.10.000009
ORF1ab/nsp3757D757GgAcgGc11B.1.10.000018
ORF1ab/nsp3757D757delGAC---11B.1.10.000018
ORF1ab/nsp3757D757DgaCgaT11B.1.1.1220.045455
ORF1ab/nsp3757D757delGAC---11B.1.1.1390.022727
ORF1ab/nsp3757D757delGAC---11B.1.1.1420.017544
ORF1ab/nsp3757D757DgaCgaT11B.1.1.1530.001095
ORF1ab/nsp3757D757delGAC---11B.1.1.2180.007692
ORF1ab/nsp3757D757DgaCgaT11B.1.1.250.000569
ORF1ab/nsp3757D757DgaCgaT11B.1.1.2650.003155
ORF1ab/nsp3757D757DgaCgaT11B.1.1.2940.001266
ORF1ab/nsp3757D757delGAC---11B.1.1.370.000193
ORF1ab/nsp3757D757DgaCgaT11B.1.1.390.00051
ORF1ab/nsp3757D757GgAcgGc11B.1.1.4160.000905
ORF1ab/nsp3757D757AgAcgCc11B.1.1.5190.00004
ORF1ab/nsp3757D757YGacTac11B.1.1.70.000001
ORF1ab/nsp3757D757AgAcgCc11B.1.1.70.000001
ORF1ab/nsp3757D757del2gACg--11B.1.1.70.000001
ORF1ab/nsp3757D757YGacTac11B.1.1770.000013
ORF1ab/nsp3757D757del1Gac-ac11B.1.1770.000013
ORF1ab/nsp3757D757delGAC---11B.1.177.110.001698
ORF1ab/nsp3757D757DgaCgaT11B.1.177.320.00135
ORF1ab/nsp3757D757DgaCgaT11B.1.177.460.000918
ORF1ab/nsp3757D757delGAC---11B.1.177.540.000606
ORF1ab/nsp3757D757delGAC---11B.1.177.560.000668
ORF1ab/nsp3757D757DgaCgaT11B.1.177.810.000189
ORF1ab/nsp3757D757GgAcgGc11B.1.20.000009
ORF1ab/nsp3757D757HGacCac11B.1.20.000009
ORF1ab/nsp3757D757DgaCgaT11B.1.258.30.001675
ORF1ab/nsp3757D757DgaCgaT11B.1.2790.000514
ORF1ab/nsp3757D757DgaCgaT11B.1.3150.006061
ORF1ab/nsp3757D757delGAC---11B.1.3190.003049
ORF1ab/nsp3757D757DgaCgaT11B.1.351.30.000876
ORF1ab/nsp3757D757DgaCgaT11B.1.360.000146
ORF1ab/nsp3757D757YGacTac11B.1.3690.000285
ORF1ab/nsp3757D757delGAC---11B.1.4090.000781
ORF1ab/nsp3757D757DgaCgaT11B.1.4110.003704
ORF1ab/nsp3757D757delGAC---11B.1.4150.014286
ORF1ab/nsp3757D757YGacTac11B.1.4380.006536
ORF1ab/nsp3757D757YGacTac11B.1.4530.003236
ORF1ab/nsp3757D757DgaCgaT11B.1.4970.000315
ORF1ab/nsp3757D757AgAcgCc11B.1.5260.000024
ORF1ab/nsp3757D757YGacTac11B.1.5440.006024
ORF1ab/nsp3757D757DgaCgaT11B.1.5750.000303
ORF1ab/nsp3757D757EgaCgaA11B.1.617.10.000129
ORF1ab/nsp3757D757delGAC---11B.1.617.10.000129
ORF1ab/nsp3757D757delGAC---11B.1.617.20.000004
ORF1ab/nsp3757D757del2GAC--N11B.1.6210.000089
ORF1ab/nsp3757D757HGacCac11B.1.6360.006711
ORF1ab/nsp3757D757YGacTac11B.1.6370.000073
ORF1ab/nsp3757D757DgaCgaT11B.1.930.000934
ORF1ab/nsp3757D757delGAC---11B.150.017544
ORF1ab/nsp3757D757delGAC---11B.340.013699
ORF1ab/nsp3757D757YGacTac11B.4.50.011905
ORF1ab/nsp3757D757DgaCgaT11B.400.000364
ORF1ab/nsp3757D757DgaCgaT11C.370.000116
ORF1ab/nsp3757D757del2gACg--11C.370.000116
ORF1ab/nsp3757D757delGAC---11P.10.000016
ORF1ab/nsp3757D757DgaCgaT11P.1.140.000048
ORF1ab/nsp3757D757DgaCgaT11Q.10.000126
ORF1ab/nsp3757D757AgAcgCc11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.