CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 752

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3752V752VV1570VsyngtGgtA755462180.823144973-4975
ORF1ab/nsp3752V752VV1570VsyngtGgtT755413310.1761984973-4975
ORF1ab/nsp3752V752VV1570VsyngtGgtC755450.0006619014973-4975
ORF1ab/nsp3752V752LV1570LnonsynGtgTtg2272170.9559474973-4975
ORF1ab/nsp3752V752LV1570LnonsynGtgCtg227100.04405294973-4975
ORF1ab/nsp3752V752IV1570InonsynGtGAtA1061050.9905664973-4975
ORF1ab/nsp3752V752IV1570InonsynGtGAtT10610.009433964973-4975
ORF1ab/nsp3752V752MV1570MnonsynGtgAtg575714973-4975
ORF1ab/nsp3752V752delV1570deldelGTG---393914973-4975
ORF1ab/nsp3752V752AV1570AnonsyngTggCg353514973-4975
ORF1ab/nsp3752V752GV1570GnonsyngTggGg19180.9473684973-4975
ORF1ab/nsp3752V752GV1570GnonsyngTGgGT1910.05263164973-4975
ORF1ab/nsp3752V752EV1570EnonsyngTggAg3314973-4975
ORF1ab/nsp3752V752del1V1570del1delGtGAt-3314973-4975
ORF1ab/nsp3752V752RV1570RnonsynGTgAGg2214973-4975
ORF1ab/nsp3752V752del2V1570del2delgTGg--210.54973-4975
ORF1ab/nsp3752V752del2V1570del2delGTg--g210.54973-4975
ORF1ab/nsp3752V752SV1570SnonsynGTGAGT1114973-4975

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3752V752VgtGgtA62187554All0.001189
ORF1ab/nsp3752V752VgtGgtT13317554All0.000255
ORF1ab/nsp3752V752VgtGgtC57554All0.000001
ORF1ab/nsp3752V752VgtGgtA57405741AY.46.60.41447
ORF1ab/nsp3752V752VgtGgtT15741AY.46.60.000072
ORF1ab/nsp3752V752VgtGgtT459606B.1.1.70.000411
ORF1ab/nsp3752V752VgtGgtA145606B.1.1.70.00013
ORF1ab/nsp3752V752VgtGgtC2606B.1.1.70.000002
ORF1ab/nsp3752V752VgtGgtT376376B.1.3510.011177
ORF1ab/nsp3752V752LGtgTtg217227All0.000042
ORF1ab/nsp3752V752LGtgCtg10227All0.000002
ORF1ab/nsp3752V752VgtGgtT161202AY.40.000251
ORF1ab/nsp3752V752VgtGgtA41202AY.40.000064
ORF1ab/nsp3752V752LGtgTtg107107AY.40.000167
ORF1ab/nsp3752V752IGtGAtA105106All0.00002
ORF1ab/nsp3752V752IGtGAtT1106All0
ORF1ab/nsp3752V752IGtGAtA105105AY.46.60.007582
ORF1ab/nsp3752V752VgtGgtT5296B.1.617.20.000196
ORF1ab/nsp3752V752VgtGgtA4396B.1.617.20.000162
ORF1ab/nsp3752V752VgtGgtC196B.1.617.20.000004
ORF1ab/nsp3752V752VgtGgtA3964AY.1030.000242
ORF1ab/nsp3752V752VgtGgtT2564AY.1030.000155
ORF1ab/nsp3752V752MGtgAtg5757All0.000011
ORF1ab/nsp3752V752VgtGgtT5656B.1.36.290.028971
ORF1ab/nsp3752V752VgtGgtA4547AY.440.000274
ORF1ab/nsp3752V752VgtGgtT247AY.440.000012
ORF1ab/nsp3752V752delGTG---3939All0.000007
ORF1ab/nsp3752V752AgTggCg3535All0.000007
ORF1ab/nsp3752V752VgtGgtA2032B.1.20.000176
ORF1ab/nsp3752V752VgtGgtT1232B.1.20.000106
ORF1ab/nsp3752V752VgtGgtA1425AY.430.000062
ORF1ab/nsp3752V752VgtGgtT1125AY.430.000049
ORF1ab/nsp3752V752VgtGgtA2323AY.300.009102
ORF1ab/nsp3752V752LGtgTtg1622B.1.1.70.000014
ORF1ab/nsp3752V752LGtgCtg622B.1.1.70.000005
ORF1ab/nsp3752V752GgTggGg1819All0.000003
ORF1ab/nsp3752V752GgTGgGT119All0
ORF1ab/nsp3752V752VgtGgtT1919B.1.380.612903
ORF1ab/nsp3752V752delGTG---1717B.1.1.70.000015
ORF1ab/nsp3752V752VgtGgtT1616P.10.000252
ORF1ab/nsp3752V752VgtGgtA1313AY.960.026971
ORF1ab/nsp3752V752VgtGgtA1111AY.1190.000388
ORF1ab/nsp3752V752AgTggCg1111B.1.20.000097
ORF1ab/nsp3752V752LGtgTtg1010AY.470.000311
ORF1ab/nsp3752V752VgtGgtT510B.10.000046
ORF1ab/nsp3752V752VgtGgtA410B.10.000037
ORF1ab/nsp3752V752VgtGgtC110B.10.000009
ORF1ab/nsp3752V752VgtGgtT1010B.1.1.2840.001074
ORF1ab/nsp3752V752LGtgTtg1010B.1.617.20.000038
ORF1ab/nsp3752V752MGtgAtg99B.1.1770.000119
ORF1ab/nsp3752V752LGtgTtg99B.1.20.000079
ORF1ab/nsp3752V752VgtGgtT99B.1.6370.000658
ORF1ab/nsp3752V752LGtgTtg88AY.4.20.000174
ORF1ab/nsp3752V752VgtGgtA88AY.460.000833
ORF1ab/nsp3752V752VgtGgtT88AY.9.20.000294
ORF1ab/nsp3752V752VgtGgtT88B.1.1.2970.017897
ORF1ab/nsp3752V752MGtgAtg88B.1.1.70.000007
ORF1ab/nsp3752V752VgtGgtA88B.1.258.170.000832
ORF1ab/nsp3752V752VgtGgtA47AY.39.10.000158
ORF1ab/nsp3752V752VgtGgtT37AY.39.10.000119
ORF1ab/nsp3752V752LGtgTtg77B.1.10.000127
ORF1ab/nsp3752V752AgTggCg77B.1.1.330.002946
ORF1ab/nsp3752V752VgtGgtT77Q.80.001154
ORF1ab/nsp3752V752VgtGgtT56AY.30.00005
ORF1ab/nsp3752V752VgtGgtA16AY.30.00001
ORF1ab/nsp3752V752VgtGgtT56AY.450.000608
ORF1ab/nsp3752V752VgtGgtA16AY.450.000122
ORF1ab/nsp3752V752VgtGgtA66AY.920.001724
ORF1ab/nsp3752V752VgtGgtT46B.1.1.5190.000159
ORF1ab/nsp3752V752VgtGgtA26B.1.1.5190.000079
ORF1ab/nsp3752V752VgtGgtT45AY.250.000024
ORF1ab/nsp3752V752VgtGgtA15AY.250.000006
ORF1ab/nsp3752V752VgtGgtA35AY.390.000074
ORF1ab/nsp3752V752VgtGgtT25AY.390.000049
ORF1ab/nsp3752V752LGtgTtg55AY.430.000022
ORF1ab/nsp3752V752VgtGgtA55AY.740.000578
ORF1ab/nsp3752V752MGtgAtg55B.1.3510.000149
ORF1ab/nsp3752V752MGtgAtg55B.1.4290.000118
ORF1ab/nsp3752V752VgtGgtT55B.1.5260.000118
ORF1ab/nsp3752V752MGtgAtg44AY.40.000006
ORF1ab/nsp3752V752MGtgAtg44AY.440.000024
ORF1ab/nsp3752V752VgtGgtT34AY.50.000062
ORF1ab/nsp3752V752VgtGgtA14AY.50.000021
ORF1ab/nsp3752V752VgtGgtT44AY.98.10.000194
ORF1ab/nsp3752V752MGtgAtg44B.10.000037
ORF1ab/nsp3752V752VgtGgtT24B.1.10.000036
ORF1ab/nsp3752V752VgtGgtA24B.1.10.000036
ORF1ab/nsp3752V752VgtGgtT44B.1.360.000584
ORF1ab/nsp3752V752VgtGgtT44B.1.5250.000453
ORF1ab/nsp3752V752MGtgAtg44P.10.000063
ORF1ab/nsp3752V752VgtGgtA44P.1.150.000929
ORF1ab/nsp3752V752VgtGgtT44P.1.170.000647
ORF1ab/nsp3752V752del1GtGAt-33All0.000001
ORF1ab/nsp3752V752EgTggAg33All0.000001
ORF1ab/nsp3752V752VgtGgtA33AY.1000.000138
ORF1ab/nsp3752V752VgtGgtA23AY.1020.000053
ORF1ab/nsp3752V752VgtGgtT13AY.1020.000027
ORF1ab/nsp3752V752LGtgTtg33AY.1030.000019
ORF1ab/nsp3752V752VgtGgtT23AY.230.000139
ORF1ab/nsp3752V752VgtGgtA13AY.230.00007
ORF1ab/nsp3752V752VgtGgtT23AY.330.000134
ORF1ab/nsp3752V752VgtGgtA13AY.330.000067
ORF1ab/nsp3752V752LGtgTtg33AY.390.000074
ORF1ab/nsp3752V752VgtGgtA33AY.4.20.000065
ORF1ab/nsp3752V752VgtGgtA33AY.900.002053
ORF1ab/nsp3752V752GgTggGg33B.10.000027
ORF1ab/nsp3752V752AgTggCg33B.1.1.250.001706
ORF1ab/nsp3752V752AgTggCg33B.1.1.70.000003
ORF1ab/nsp3752V752del1GtGAt-33B.1.1.70.000003
ORF1ab/nsp3752V752LGtgTtg33B.1.1770.00004
ORF1ab/nsp3752V752VgtGgtT23B.1.617.10.000258
ORF1ab/nsp3752V752VgtGgtA13B.1.617.10.000129
ORF1ab/nsp3752V752LGtgCtg220.111111
ORF1ab/nsp3752V752GgTGgGT120.055556
ORF1ab/nsp3752V752GgTggGg120.055556
ORF1ab/nsp3752V752RGTgAGg22All0
ORF1ab/nsp3752V752del2GTg--g12All0
ORF1ab/nsp3752V752del2gTGg--12All0
ORF1ab/nsp3752V752VgtGgtT22AY.1130.000285
ORF1ab/nsp3752V752VgtGgtT12AY.1170.000085
ORF1ab/nsp3752V752VgtGgtA12AY.1170.000085
ORF1ab/nsp3752V752VgtGgtT22AY.1200.000074
ORF1ab/nsp3752V752MGtgAtg22AY.250.000012
ORF1ab/nsp3752V752VgtGgtT22AY.410.000588
ORF1ab/nsp3752V752LGtgTtg22AY.420.00008
ORF1ab/nsp3752V752LGtgTtg22AY.46.60.000144
ORF1ab/nsp3752V752VgtGgtT22AY.470.000062
ORF1ab/nsp3752V752VgtGgtA22AY.850.000854
ORF1ab/nsp3752V752LGtgTtg22B.10.000018
ORF1ab/nsp3752V752VgtGgtT22B.1.1.4580.083333
ORF1ab/nsp3752V752GgTggGg22B.1.1.5190.000079
ORF1ab/nsp3752V752GgTggGg22B.1.1.70.000002
ORF1ab/nsp3752V752LGtgTtg22B.1.1040.00738
ORF1ab/nsp3752V752delGTG---22B.1.1770.000026
ORF1ab/nsp3752V752VgtGgtA22B.1.2430.000139
ORF1ab/nsp3752V752VgtGgtT22B.1.2470.029851
ORF1ab/nsp3752V752VgtGgtT22B.1.351.10.076923
ORF1ab/nsp3752V752delGTG---22B.1.360.000292
ORF1ab/nsp3752V752GgTggGg22B.1.4290.000047
ORF1ab/nsp3752V752VgtGgtT12B.1.4290.000024
ORF1ab/nsp3752V752VgtGgtA12B.1.4290.000024
ORF1ab/nsp3752V752VgtGgtT22B.1.5680.002222
ORF1ab/nsp3752V752LGtgTtg22P.10.000032
ORF1ab/nsp3752V752EgTggAg110.055556
ORF1ab/nsp3752V752IGtGAtT110.055556
ORF1ab/nsp3752V752SGTGAGT110.055556
ORF1ab/nsp3752V752RGTgAGg110.055556
ORF1ab/nsp3752V752MGtgAtg110.055556
ORF1ab/nsp3752V752VgtGgtT110.055556
ORF1ab/nsp3752V752delGTG---11A0.000387
ORF1ab/nsp3752V752delGTG---11A.2.20.001689
ORF1ab/nsp3752V752SGTGAGT11All0
ORF1ab/nsp3752V752LGtgTtg11AY.1000.000046
ORF1ab/nsp3752V752LGtgTtg11AY.1020.000027
ORF1ab/nsp3752V752EgTggAg11AY.1030.000006
ORF1ab/nsp3752V752MGtgAtg11AY.1030.000006
ORF1ab/nsp3752V752VgtGgtT11AY.1060.000335
ORF1ab/nsp3752V752AgTggCg11AY.1170.000085
ORF1ab/nsp3752V752LGtgTtg11AY.1200.000037
ORF1ab/nsp3752V752MGtgAtg11AY.1200.000037
ORF1ab/nsp3752V752VgtGgtT11AY.20.000356
ORF1ab/nsp3752V752LGtgTtg11AY.200.000039
ORF1ab/nsp3752V752VgtGgtA11AY.220.002092
ORF1ab/nsp3752V752LGtgTtg11AY.240.000431
ORF1ab/nsp3752V752MGtgAtg11AY.30.00001
ORF1ab/nsp3752V752LGtgTtg11AY.330.000067
ORF1ab/nsp3752V752LGtgTtg11AY.39.10.00004
ORF1ab/nsp3752V752delGTG---11AY.40.000002
ORF1ab/nsp3752V752AgTggCg11AY.40.000002
ORF1ab/nsp3752V752VgtGgtA11AY.420.00004
ORF1ab/nsp3752V752LGtgTtg11AY.440.000006
ORF1ab/nsp3752V752VgtGgtA11AY.46.10.001027
ORF1ab/nsp3752V752LGtgTtg11AY.480.000465
ORF1ab/nsp3752V752VgtGgtT11AY.570.000656
ORF1ab/nsp3752V752VgtGgtT11AY.60.000041
ORF1ab/nsp3752V752MGtgAtg11AY.60.000041
ORF1ab/nsp3752V752AgTggCg11AY.610.000105
ORF1ab/nsp3752V752VgtGgtT11AY.610.000105
ORF1ab/nsp3752V752EgTggAg11AY.620.000436
ORF1ab/nsp3752V752VgtGgtA11AY.620.000436
ORF1ab/nsp3752V752LGtgTtg11AY.620.000436
ORF1ab/nsp3752V752VgtGgtA11AY.7.10.000113
ORF1ab/nsp3752V752LGtgTtg11AY.740.000116
ORF1ab/nsp3752V752VgtGgtT11AY.770.001127
ORF1ab/nsp3752V752VgtGgtT11AY.780.001541
ORF1ab/nsp3752V752VgtGgtA11AY.880.000884
ORF1ab/nsp3752V752MGtgAtg11AY.920.000287
ORF1ab/nsp3752V752VgtGgtA11AY.930.000273
ORF1ab/nsp3752V752LGtgTtg11AY.980.000079
ORF1ab/nsp3752V752VgtGgtA11AY.99.20.000092
ORF1ab/nsp3752V752AgTggCg11AY.99.20.000092
ORF1ab/nsp3752V752LGtgTtg11B0.000128
ORF1ab/nsp3752V752VgtGgtA11B0.000128
ORF1ab/nsp3752V752del2gTGg--11B.10.000009
ORF1ab/nsp3752V752RGTgAGg11B.10.000009
ORF1ab/nsp3752V752AgTggCg11B.10.000009
ORF1ab/nsp3752V752MGtgAtg11B.1.10.000018
ORF1ab/nsp3752V752AgTggCg11B.1.10.000018
ORF1ab/nsp3752V752VgtGgtT11B.1.1.1010.01
ORF1ab/nsp3752V752delGTG---11B.1.1.1390.022727
ORF1ab/nsp3752V752delGTG---11B.1.1.1420.017544
ORF1ab/nsp3752V752GgTggGg11B.1.1.2200.001859
ORF1ab/nsp3752V752MGtgAtg11B.1.1.2510.007937
ORF1ab/nsp3752V752VgtGgtA11B.1.1.2940.001266
ORF1ab/nsp3752V752VgtGgtT11B.1.1.3040.002809
ORF1ab/nsp3752V752VgtGgtT11B.1.1.3060.000438
ORF1ab/nsp3752V752VgtGgtT11B.1.1.4130.006897
ORF1ab/nsp3752V752LGtgTtg11B.1.1.440.00241
ORF1ab/nsp3752V752LGtgTtg11B.1.1470.000756
ORF1ab/nsp3752V752delGTG---11B.1.1570.002985
ORF1ab/nsp3752V752VgtGgtT11B.1.1600.000031
ORF1ab/nsp3752V752delGTG---11B.1.1600.000031
ORF1ab/nsp3752V752LGtgCtg11B.1.1600.000031
ORF1ab/nsp3752V752VgtGgtT11B.1.1770.000013
ORF1ab/nsp3752V752VgtGgtA11B.1.177.210.000076
ORF1ab/nsp3752V752delGTG---11B.1.177.540.000606
ORF1ab/nsp3752V752delGTG---11B.1.177.630.002703
ORF1ab/nsp3752V752AgTggCg11B.1.177.870.000728
ORF1ab/nsp3752V752MGtgAtg11B.1.20.000009
ORF1ab/nsp3752V752delGTG---11B.1.20.000009
ORF1ab/nsp3752V752GgTggGg11B.1.20.000009
ORF1ab/nsp3752V752VgtGgtA11B.1.2210.000071
ORF1ab/nsp3752V752GgTggGg11B.1.2320.000537
ORF1ab/nsp3752V752LGtgTtg11B.1.2360.002053
ORF1ab/nsp3752V752GgTggGg11B.1.2430.00007
ORF1ab/nsp3752V752LGtgTtg11B.1.3050.002151
ORF1ab/nsp3752V752LGtgTtg11B.1.3110.000275
ORF1ab/nsp3752V752del2GTg--g11B.1.3110.000275
ORF1ab/nsp3752V752delGTG---11B.1.3190.003049
ORF1ab/nsp3752V752VgtGgtC11B.1.3320.003497
ORF1ab/nsp3752V752VgtGgtT11B.1.3330.010526
ORF1ab/nsp3752V752AgTggCg11B.1.3490.000715
ORF1ab/nsp3752V752VgtGgtT11B.1.36.350.002604
ORF1ab/nsp3752V752delGTG---11B.1.4090.000781
ORF1ab/nsp3752V752delGTG---11B.1.4150.014286
ORF1ab/nsp3752V752MGtgAtg11B.1.4160.001269
ORF1ab/nsp3752V752VgtGgtT11B.1.4270.00005
ORF1ab/nsp3752V752GgTggGg11B.1.4270.00005
ORF1ab/nsp3752V752LGtgTtg11B.1.4290.000024
ORF1ab/nsp3752V752GgTggGg11B.1.5100.026316
ORF1ab/nsp3752V752GgTggGg11B.1.5610.000397
ORF1ab/nsp3752V752LGtgTtg11B.1.5740.002151
ORF1ab/nsp3752V752VgtGgtT11B.1.5760.000907
ORF1ab/nsp3752V752VgtGgtA11B.1.5960.000087
ORF1ab/nsp3752V752LGtgTtg11B.1.5960.000087
ORF1ab/nsp3752V752LGtgTtg11B.1.617.10.000129
ORF1ab/nsp3752V752delGTG---11B.1.617.10.000129
ORF1ab/nsp3752V752delGTG---11B.1.617.20.000004
ORF1ab/nsp3752V752MGtgAtg11B.1.617.20.000004
ORF1ab/nsp3752V752AgTggCg11B.1.617.20.000004
ORF1ab/nsp3752V752delGTG---11B.1.6210.000089
ORF1ab/nsp3752V752LGtgCtg11B.1.6250.002353
ORF1ab/nsp3752V752LGtgTtg11B.1.6280.000352
ORF1ab/nsp3752V752delGTG---11B.150.017544
ORF1ab/nsp3752V752LGtgTtg11B.400.000364
ORF1ab/nsp3752V752VgtGgtT11B.550.00295
ORF1ab/nsp3752V752LGtgTtg11B.60.00091
ORF1ab/nsp3752V752GgTggGg11C.390.018868
ORF1ab/nsp3752V752LGtgTtg11D.20.000075
ORF1ab/nsp3752V752delGTG---11P.10.000016
ORF1ab/nsp3752V752AgTggCg11P.10.000016
ORF1ab/nsp3752V752MGtgAtg11P.1.10.000318
ORF1ab/nsp3752V752VgtGgtA11P.1.140.000048
ORF1ab/nsp3752V752AgTggCg11P.1.140.000048
ORF1ab/nsp3752V752VgtGgtT11Q.30.000145