CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 75 & Codon = Atg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp375L75ML893MnonsynCtgAtg27827812942-2944

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp375L75MCtgAtg278278All0.000053
ORF1ab/nsp375L75MCtgAtg5252B.1.1.70.000047
ORF1ab/nsp375L75MCtgAtg4141B.1.1.630.015818
ORF1ab/nsp375L75MCtgAtg3636B.1.617.20.000136
ORF1ab/nsp375L75MCtgAtg2323AY.90.001555
ORF1ab/nsp375L75MCtgAtg2020AY.1000.00092
ORF1ab/nsp375L75MCtgAtg1818AY.40.000028
ORF1ab/nsp375L75MCtgAtg77AY.750.000392
ORF1ab/nsp375L75MCtgAtg66B.1.5610.002382
ORF1ab/nsp375L75MCtgAtg66P.10.000095
ORF1ab/nsp375L75MCtgAtg55B.1.10.000091
ORF1ab/nsp375L75MCtgAtg55B.1.20.000044
ORF1ab/nsp375L75MCtgAtg33AY.430.000013
ORF1ab/nsp375L75MCtgAtg33B.1.1.2910.002227
ORF1ab/nsp375L75MCtgAtg33B.1.1470.002268
ORF1ab/nsp375L75MCtgAtg33B.1.177.300.007538
ORF1ab/nsp375L75MCtgAtg22AY.1170.000169
ORF1ab/nsp375L75MCtgAtg22AY.1180.000125
ORF1ab/nsp375L75MCtgAtg22AY.200.000078
ORF1ab/nsp375L75MCtgAtg22AY.30.00002
ORF1ab/nsp375L75MCtgAtg22AY.3.10.000171
ORF1ab/nsp375L75MCtgAtg22AY.34.10.00102
ORF1ab/nsp375L75MCtgAtg22B.10.000018
ORF1ab/nsp375L75MCtgAtg22B.1.1.1890.003026
ORF1ab/nsp375L75MCtgAtg22B.1.1.5190.000079
ORF1ab/nsp375L75MCtgAtg22B.1.1770.000026
ORF1ab/nsp375L75MCtgAtg22B.1.177.510.009132
ORF1ab/nsp375L75MCtgAtg11A0.000387
ORF1ab/nsp375L75MCtgAtg11AU.30.00211
ORF1ab/nsp375L75MCtgAtg11AY.1020.000027
ORF1ab/nsp375L75MCtgAtg11AY.1030.000006
ORF1ab/nsp375L75MCtgAtg11AY.1070.000466
ORF1ab/nsp375L75MCtgAtg11AY.250.000006
ORF1ab/nsp375L75MCtgAtg11AY.330.000067
ORF1ab/nsp375L75MCtgAtg11AY.4.2.10.000149
ORF1ab/nsp375L75MCtgAtg11AY.440.000006
ORF1ab/nsp375L75MCtgAtg11AY.510.000909
ORF1ab/nsp375L75MCtgAtg11AY.610.000105
ORF1ab/nsp375L75MCtgAtg11B.1.1.2140.000055
ORF1ab/nsp375L75MCtgAtg11B.1.177.730.000566
ORF1ab/nsp375L75MCtgAtg11B.1.258.170.000104
ORF1ab/nsp375L75MCtgAtg11B.1.3110.000275
ORF1ab/nsp375L75MCtgAtg11B.1.3770.004566
ORF1ab/nsp375L75MCtgAtg11B.1.4260.001009
ORF1ab/nsp375L75MCtgAtg11B.1.4290.000024
ORF1ab/nsp375L75MCtgAtg11B.1.5250.000113
ORF1ab/nsp375L75MCtgAtg11B.1.5260.000024
ORF1ab/nsp375L75MCtgAtg11B.1.5750.000303
ORF1ab/nsp375L75MCtgAtg11B.1.5820.000491
ORF1ab/nsp375L75MCtgAtg11B.1.6230.000536
ORF1ab/nsp375L75MCtgAtg11P.1.70.000319
ORF1ab/nsp375L75MCtgAtg11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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