CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 75 | L75L | L893L | syn | ctG | ctA | 20724 | 17126 | 0.826385 | 2942-2944 |
ORF1ab/nsp3 | 75 | L75L | L893L | syn | Ctg | Ttg | 20724 | 3345 | 0.161407 | 2942-2944 |
ORF1ab/nsp3 | 75 | L75L | L893L | syn | ctG | ctT | 20724 | 246 | 0.0118703 | 2942-2944 |
ORF1ab/nsp3 | 75 | L75L | L893L | syn | ctG | ctC | 20724 | 5 | 0.000241266 | 2942-2944 |
ORF1ab/nsp3 | 75 | L75L | L893L | syn | CtG | TtA | 20724 | 2 | 0.0000965065 | 2942-2944 |
ORF1ab/nsp3 | 75 | L75Q | L893Q | nonsyn | cTg | cAg | 402 | 399 | 0.992537 | 2942-2944 |
ORF1ab/nsp3 | 75 | L75Q | L893Q | nonsyn | cTG | cAA | 402 | 3 | 0.00746269 | 2942-2944 |
ORF1ab/nsp3 | 75 | L75M | L893M | nonsyn | Ctg | Atg | 278 | 278 | 1 | 2942-2944 |
ORF1ab/nsp3 | 75 | L75P | L893P | nonsyn | cTg | cCg | 59 | 55 | 0.932203 | 2942-2944 |
ORF1ab/nsp3 | 75 | L75P | L893P | nonsyn | cTG | cCA | 59 | 3 | 0.0508475 | 2942-2944 |
ORF1ab/nsp3 | 75 | L75P | L893P | nonsyn | cTG | cCT | 59 | 1 | 0.0169492 | 2942-2944 |
ORF1ab/nsp3 | 75 | L75del | L893del | del | CTG | --- | 52 | 52 | 1 | 2942-2944 |
ORF1ab/nsp3 | 75 | L75V | L893V | nonsyn | Ctg | Gtg | 13 | 13 | 1 | 2942-2944 |
ORF1ab/nsp3 | 75 | L75R | L893R | nonsyn | cTg | cGg | 12 | 10 | 0.833333 | 2942-2944 |
ORF1ab/nsp3 | 75 | L75R | L893R | nonsyn | cTG | cGA | 12 | 2 | 0.166667 | 2942-2944 |
ORF1ab/nsp3 | 75 | L75H | L893H | nonsyn | cTG | cAC | 3 | 2 | 0.666667 | 2942-2944 |
ORF1ab/nsp3 | 75 | L75del1 | L893del1 | del | ctG | ct- | 3 | 2 | 0.666667 | 2942-2944 |
ORF1ab/nsp3 | 75 | L75del1 | L893del1 | del | Ctg | -tg | 3 | 1 | 0.333333 | 2942-2944 |
ORF1ab/nsp3 | 75 | L75H | L893H | nonsyn | cTG | cAT | 3 | 1 | 0.333333 | 2942-2944 |
ORF1ab/nsp3 | 75 | L75S | L893S | nonsyn | CTg | TCg | 2 | 1 | 0.5 | 2942-2944 |
ORF1ab/nsp3 | 75 | L75S | L893S | nonsyn | CTG | TCA | 2 | 1 | 0.5 | 2942-2944 |
ORF1ab/nsp3 | 75 | L75E | L893E | nonsyn | CTg | GAg | 1 | 1 | 1 | 2942-2944 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 17126 | 20724 | All | 0.003276 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 3345 | 20724 | All | 0.00064 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 246 | 20724 | All | 0.000047 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctC | 5 | 20724 | All | 0.000001 |
ORF1ab/nsp3 | 75 | L75L | CtG | TtA | 2 | 20724 | All | 0 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 8834 | 8834 | AY.7.1 | 0.995605 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 5069 | 5074 | AY.7 | 0.993532 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 5 | 5074 | AY.7 | 0.00098 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1769 | 1769 | AY.7.2 | 0.989374 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1314 | 1318 | AY.20 | 0.051069 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 3 | 1318 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctC | 1 | 1318 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 475 | 904 | B.1.1.7 | 0.000425 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 397 | 904 | B.1.1.7 | 0.000355 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 32 | 904 | B.1.1.7 | 0.000029 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 748 | 748 | B.1.623 | 0.401288 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 399 | 402 | All | 0.000076 |
ORF1ab/nsp3 | 75 | L75Q | cTG | cAA | 3 | 402 | All | 0.000001 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 278 | 278 | All | 0.000053 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 245 | 245 | B.1.1.7 | 0.000219 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 217 | 226 | AY.103 | 0.001347 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 8 | 226 | AY.103 | 0.00005 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 1 | 226 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 195 | 195 | A.6 | 1 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 99 | 154 | B.1.617.2 | 0.000373 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 50 | 154 | B.1.617.2 | 0.000188 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 5 | 154 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 137 | 146 | AY.42 | 0.005512 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 9 | 146 | AY.42 | 0.000362 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 84 | 115 | AY.4 | 0.000131 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 21 | 115 | AY.4 | 0.000033 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 10 | 115 | AY.4 | 0.000016 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 73 | 95 | P.1 | 0.00115 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 14 | 95 | P.1 | 0.000221 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 8 | 95 | P.1 | 0.000126 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 71 | 81 | AY.36 | 0.010523 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 10 | 81 | AY.36 | 0.001482 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 74 | 74 | AY.24 | 0.031897 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 70 | 72 | B.1.526 | 0.001645 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 2 | 72 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 28 | 64 | AY.43 | 0.000124 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 26 | 64 | AY.43 | 0.000115 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 10 | 64 | AY.43 | 0.000044 |
ORF1ab/nsp3 | 75 | L75P | cTg | cCg | 55 | 59 | All | 0.000011 |
ORF1ab/nsp3 | 75 | L75P | cTG | cCA | 3 | 59 | All | 0.000001 |
ORF1ab/nsp3 | 75 | L75P | cTG | cCT | 1 | 59 | All | 0 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 52 | 52 | All | 0.00001 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 52 | 52 | B.1.1.7 | 0.000047 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 32 | 43 | B.1 | 0.000293 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 8 | 43 | B.1 | 0.000073 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 3 | 43 | B.1 | 0.000027 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 41 | 41 | B.1.1.63 | 0.015818 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 38 | 39 | AY.6 | 0.001563 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 39 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 17 | 36 | B.1.2 | 0.00015 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 17 | 36 | B.1.2 | 0.00015 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 1 | 36 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctC | 1 | 36 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 36 | 36 | B.1.617.2 | 0.000136 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 24 | 34 | AY.44 | 0.000146 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 9 | 34 | AY.44 | 0.000055 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 1 | 34 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 29 | 33 | B.1.221 | 0.00206 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 4 | 33 | B.1.221 | 0.000284 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 27 | 29 | B.1.351 | 0.000803 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 2 | 29 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 14 | 28 | AY.3 | 0.000139 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 11 | 28 | AY.3 | 0.000109 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 3 | 28 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 23 | 23 | AY.9 | 0.001555 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 20 | 20 | AY.100 | 0.00092 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 12 | 20 | B.1.177 | 0.000158 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 6 | 20 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctC | 2 | 20 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 19 | 19 | AY.120 | 0.000706 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 18 | 18 | AY.4 | 0.000028 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 18 | 18 | B.1.320 | 0.022416 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 17 | 17 | AY.11 | 0.022758 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 13 | 17 | AY.121 | 0.001759 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 3 | 17 | AY.121 | 0.000406 |
ORF1ab/nsp3 | 75 | L75L | CtG | TtA | 1 | 17 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 75 | L75P | cTg | cCg | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 16 | 16 | B.1.324 | 0.025682 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 8 | 16 | B.1.429 | 0.000188 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 5 | 16 | B.1.429 | 0.000118 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 3 | 16 | B.1.429 | 0.000071 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 13 | 15 | AY.5 | 0.000268 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 2 | 15 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 9 | 14 | AY.25 | 0.000054 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 5 | 14 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 14 | 14 | AY.4 | 0.000022 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 14 | 14 | B.1.2 | 0.000123 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 14 | 14 | B.1.637 | 0.001023 |
ORF1ab/nsp3 | 75 | L75V | Ctg | Gtg | 13 | 13 | All | 0.000002 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 13 | 13 | AY.113 | 0.001851 |
ORF1ab/nsp3 | 75 | L75R | cTg | cGg | 10 | 12 | All | 0.000002 |
ORF1ab/nsp3 | 75 | L75R | cTG | cGA | 2 | 12 | All | 0 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 12 | 12 | AY.88 | 0.01061 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 12 | 12 | B.1.621 | 0.001062 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 10 | 10 | AY.106 | 0.003349 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 6 | 10 | AY.111 | 0.001099 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 4 | 10 | AY.111 | 0.000733 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 5 | 10 | B.1.160 | 0.000156 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 4 | 10 | B.1.160 | 0.000125 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 1 | 10 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 10 | 10 | B.1.3 | 0.026178 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 5 | 9 | AY.45 | 0.000608 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 4 | 9 | AY.45 | 0.000487 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 8 | 9 | AY.84 | 0.0035 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 9 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 9 | 9 | B.1.311 | 0.002471 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 7 | 8 | AY.29 | 0.00011 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 8 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 7 | 8 | AY.44 | 0.000043 |
ORF1ab/nsp3 | 75 | L75Q | cTG | cAA | 1 | 8 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 8 | 8 | AY.5.2 | 0.019704 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 4 | 8 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 2 | 8 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 2 | 8 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 6 | 8 | B.1.234 | 0.000792 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 2 | 8 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 75 | L75V | Ctg | Gtg | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 6 | 7 | AY.102 | 0.000159 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 7 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 5 | 7 | AY.39 | 0.000124 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 2 | 7 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 7 | 7 | AY.75 | 0.000392 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 6 | 7 | AY.75 | 0.000336 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 7 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 4 | 7 | AY.98 | 0.000316 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 2 | 7 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 1 | 7 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 7 | 7 | B.1.110.3 | 0.005029 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 7 | 7 | B.1.436 | 0.007202 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 7 | 7 | C.36.3 | 0.003971 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 5 | 7 | Q.8 | 0.000825 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 2 | 7 | Q.8 | 0.00033 |
ORF1ab/nsp3 | 75 | L75P | cTg | cCg | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 4 | 6 | AY.46.6 | 0.000289 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 2 | 6 | AY.46.6 | 0.000144 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 6 | 6 | B.1.1.216 | 0.005343 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 6 | 6 | B.1.561 | 0.002382 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 6 | 6 | P.1.16 | 0.002245 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 6 | 6 | P.1.7 | 0.001916 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 3 | 5 | 0.166667 | |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 2 | 5 | 0.111111 | |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 3 | 5 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 2 | 5 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 3 | 5 | AY.117 | 0.000254 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 2 | 5 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 4 | 5 | AY.23 | 0.000279 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 5 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 3 | 5 | AY.33 | 0.0002 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 5 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 1 | 5 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 5 | 5 | AY.4.3 | 0.004209 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 4 | 5 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 1 | 5 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 3 | 5 | B.1.1.214 | 0.000166 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 5 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 1 | 5 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 5 | 5 | B.1.177.75 | 0.005203 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp3 | 75 | L75Q | cTG | cAA | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 4 | 4 | AY.22 | 0.008368 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 3 | 4 | AY.26 | 0.000085 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 4 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 3 | 4 | AY.46 | 0.000312 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 4 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 4 | 4 | AY.5.3 | 0.00135 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 4 | 4 | AY.58 | 0.00363 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 2 | 4 | AY.64 | 0.00119 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 2 | 4 | AY.64 | 0.00119 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp3 | 75 | L75P | cTg | cCg | 4 | 4 | B.1.438.1 | 0.000429 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 4 | 4 | B.1.564.1 | 0.006309 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 4 | 4 | B.1.575 | 0.001214 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 2 | 4 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 4 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 1 | 4 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 3 | 4 | C.36 | 0.002732 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 4 | C.36 | 0.000911 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 3 | 4 | C.37 | 0.000348 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 4 | C.37 | 0.000116 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 3 | 4 | D.2 | 0.000225 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 1 | 4 | D.2 | 0.000075 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 4 | 4 | P.1.1 | 0.001271 |
ORF1ab/nsp3 | 75 | L75del1 | ctG | ct- | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 75 | L75H | cTG | cAC | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 75 | L75H | cTG | cAT | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 75 | L75del1 | Ctg | -tg | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 2 | 3 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 3 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 2 | 3 | AY.16.1 | 0.00094 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 3 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 75 | L75P | cTg | cCg | 2 | 3 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 75 | L75P | cTG | cCA | 1 | 3 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 2 | 3 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 3 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 3 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 3 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 75 | L75L | CtG | TtA | 1 | 3 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 3 | 3 | B.1.1.280 | 0.009259 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 3 | 3 | B.1.1.291 | 0.002227 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 3 | 3 | B.1.1.434 | 0.001046 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 3 | 3 | B.1.147 | 0.002268 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 3 | 3 | B.1.177.30 | 0.007538 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 3 | 3 | B.1.177.44 | 0.001557 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 2 | 3 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 1 | 3 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 3 | 3 | B.1.367 | 0.002377 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 3 | 3 | B.1.499 | 0.003151 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp3 | 75 | L75P | cTg | cCg | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 75 | L75V | Ctg | Gtg | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 3 | 3 | B.30 | 0.044118 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp3 | 75 | L75H | cTG | cAC | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 75 | L75P | cTG | cCT | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 75 | L75P | cTg | cCg | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 2 | 2 | A | 0.000774 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 2 | 2 | A.25 | 0.036364 |
ORF1ab/nsp3 | 75 | L75S | CTg | TCg | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 75 | L75S | CTG | TCA | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 75 | L75P | cTg | cCg | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 2 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 1 | 2 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 75 | L75R | cTG | cGA | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 75 | L75R | cTg | cGg | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 75 | L75P | cTg | cCg | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 2 | 2 | AY.49 | 0.00639 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 2 | 2 | AY.51 | 0.001818 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 2 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 2 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 2 | 2 | AY.56 | 0.00321 |
ORF1ab/nsp3 | 75 | L75P | cTG | cCA | 1 | 2 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 75 | L75S | CTG | TCA | 1 | 2 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 75 | L75P | cTg | cCg | 1 | 2 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 75 | L75S | CTg | TCg | 1 | 2 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 2 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 2 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 1 | 2 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 2 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 2 | 2 | AY.99.1 | 0.003106 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 2 | 2 | B.1.1.189 | 0.003026 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 2 | 2 | B.1.1.351 | 0.005587 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 2 | B.1.1.378 | 0.007299 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 2 | B.1.1.378 | 0.007299 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 2 | 2 | B.1.177.51 | 0.009132 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 2 | 2 | B.1.258.21 | 0.015504 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp3 | 75 | L75P | cTg | cCg | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 75 | L75R | cTG | cGA | 1 | 2 | B.1.459 | 0.004082 |
ORF1ab/nsp3 | 75 | L75R | cTg | cGg | 1 | 2 | B.1.459 | 0.004082 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 2 | 2 | B.1.574 | 0.004301 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 75 | L75P | cTg | cCg | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 75 | L75E | CTg | GAg | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 75 | L75P | cTg | cCg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 75 | L75V | Ctg | Gtg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 75 | L75V | Ctg | Gtg | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 75 | L75R | cTg | cGg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 75 | L75P | cTg | cCg | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 75 | L75P | cTg | cCg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 75 | L75P | cTg | cCg | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 75 | L75P | cTg | cCg | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 75 | L75P | cTg | cCg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 75 | L75del1 | ctG | ct- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 75 | L75V | Ctg | Gtg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 75 | L75P | cTG | cCA | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 75 | L75P | cTg | cCg | 1 | 1 | AY.91.1 | 0.004065 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 75 | L75P | cTg | cCg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 75 | L75R | cTg | cGg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 75 | L75P | cTg | cCg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 75 | L75R | cTg | cGg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 75 | L75del1 | ctG | ct- | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | B.1.1.181 | 0.004545 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | B.1.1.288 | 0.001916 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | B.1.1.407 | 0.041667 |
ORF1ab/nsp3 | 75 | L75E | CTg | GAg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 75 | L75H | cTG | cAT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 75 | L75R | cTg | cGg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 75 | L75del1 | Ctg | -tg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | B.1.177.2 | 0.004545 |
ORF1ab/nsp3 | 75 | L75P | cTg | cCg | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 75 | L75P | cTg | cCg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 75 | L75P | cTg | cCg | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | B.1.258.6 | 0.019608 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 75 | L75R | cTg | cGg | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | B.1.44 | 0.008333 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 75 | L75P | cTg | cCg | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | B.1.596.1 | 0.009346 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | B.1.616 | 0.02439 |
ORF1ab/nsp3 | 75 | L75R | cTg | cGg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 75 | L75P | cTg | cCg | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp3 | 75 | L75del | CTG | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 75 | L75R | cTg | cGg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 75 | L75R | cTg | cGg | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 75 | L75L | Ctg | Ttg | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 75 | L75L | ctG | ctA | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp3 | 75 | L75M | Ctg | Atg | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 75 | L75Q | cTg | cAg | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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