CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 749 | T749I | T1567I | nonsyn | aCt | aTt | 15005 | 15003 | 0.999867 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749I | T1567I | nonsyn | aCT | aTC | 15005 | 2 | 0.000133289 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749A | T1567A | nonsyn | Act | Gct | 9905 | 9903 | 0.999798 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749A | T1567A | nonsyn | AcT | GcC | 9905 | 1 | 0.000100959 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749A | T1567A | nonsyn | AcT | GcA | 9905 | 1 | 0.000100959 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749T | T1567T | syn | acT | acC | 273 | 266 | 0.974359 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749T | T1567T | syn | acT | acA | 273 | 6 | 0.021978 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749T | T1567T | syn | acT | acG | 273 | 1 | 0.003663 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749N | T1567N | nonsyn | aCt | aAt | 78 | 76 | 0.974359 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749N | T1567N | nonsyn | aCT | aAC | 78 | 2 | 0.025641 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749del | T1567del | del | ACT | --- | 39 | 39 | 1 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749V | T1567V | nonsyn | ACt | GTt | 27 | 27 | 1 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749del1 | T1567del1 | del | aCt | a-t | 15 | 10 | 0.666667 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749del1 | T1567del1 | del | acT | ac- | 15 | 4 | 0.266667 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749del1 | T1567del1 | del | ACt | -Tt | 15 | 1 | 0.0666667 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749S | T1567S | nonsyn | Act | Tct | 9 | 5 | 0.555556 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749S | T1567S | nonsyn | AcT | TcC | 9 | 2 | 0.222222 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749S | T1567S | nonsyn | AcT | TcA | 9 | 1 | 0.111111 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749S | T1567S | nonsyn | aCt | aGt | 9 | 1 | 0.111111 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749D | T1567D | nonsyn | ACT | GAC | 5 | 3 | 0.6 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749D | T1567D | nonsyn | ACt | GAt | 5 | 2 | 0.4 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749Y | T1567Y | nonsyn | ACt | TAt | 4 | 3 | 0.75 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749Y | T1567Y | nonsyn | ACT | TAC | 4 | 1 | 0.25 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749F | T1567F | nonsyn | ACT | TTC | 2 | 1 | 0.5 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749F | T1567F | nonsyn | ACt | TTt | 2 | 1 | 0.5 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749X | T1567X | nonsyn | ACT | TAA | 1 | 1 | 1 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749E | T1567E | nonsyn | ACT | GAA | 1 | 1 | 1 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749K | T1567K | nonsyn | aCT | aAA | 1 | 1 | 1 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749del2 | T1567del2 | del | aCT | a-- | 1 | 1 | 1 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749P | T1567P | nonsyn | Act | Cct | 1 | 1 | 1 | 4964-4966 |
ORF1ab/nsp3 | 749 | T749L | T1567L | nonsyn | ACt | CTt | 1 | 1 | 1 | 4964-4966 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 15003 | 15005 | All | 0.00287 |
ORF1ab/nsp3 | 749 | T749I | aCT | aTC | 2 | 15005 | All | 0 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 9903 | 9905 | All | 0.001894 |
ORF1ab/nsp3 | 749 | T749A | AcT | GcA | 1 | 9905 | All | 0 |
ORF1ab/nsp3 | 749 | T749A | AcT | GcC | 1 | 9905 | All | 0 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 7726 | 7726 | B.1.1.7 | 0.006916 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 7464 | 7464 | B.1.617.1 | 0.9626 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2111 | 2111 | B.1.1.7 | 0.00189 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 2073 | 2073 | Q.4 | 0.942701 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1121 | 1121 | B.1.367 | 0.888273 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 541 | 541 | B.1.617.2 | 0.002037 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 495 | 495 | AY.3 | 0.004923 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 415 | 415 | B.1.620 | 0.392621 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 279 | 279 | B.1 | 0.002556 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 277 | 277 | AY.4 | 0.000431 |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 266 | 273 | All | 0.000051 |
ORF1ab/nsp3 | 749 | T749T | acT | acA | 6 | 273 | All | 0.000001 |
ORF1ab/nsp3 | 749 | T749T | acT | acG | 1 | 273 | All | 0 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 165 | 165 | AY.5.4 | 0.045656 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 152 | 152 | AY.43 | 0.000673 |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 130 | 130 | AY.43 | 0.000576 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 112 | 112 | B.1.1.133 | 0.949153 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 109 | 109 | AA.7 | 1 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 96 | 96 | B.1.234 | 0.012667 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 90 | 90 | AY.103 | 0.000559 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 85 | 85 | P.1 | 0.001339 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 81 | 81 | AY.25 | 0.000487 |
ORF1ab/nsp3 | 749 | T749N | aCt | aAt | 76 | 78 | All | 0.000015 |
ORF1ab/nsp3 | 749 | T749N | aCT | aAC | 2 | 78 | All | 0 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 75 | 75 | B.1.2 | 0.00066 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 71 | 71 | B.1.177 | 0.000935 |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 68 | 68 | AY.4.2 | 0.001475 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 52 | 52 | AY.44 | 0.000317 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 46 | 46 | A.23.1 | 0.032394 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 41 | 41 | B.1.1 | 0.000744 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 40 | 40 | Q.8 | 0.006596 |
ORF1ab/nsp3 | 749 | T749del | ACT | --- | 39 | 39 | All | 0.000007 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 35 | 35 | AY.99.2 | 0.003226 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 33 | 33 | AY.26 | 0.000934 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 32 | 32 | AY.101 | 0.015694 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 29 | 29 | B.1.1 | 0.000526 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 29 | 29 | B.1.1.1 | 0.009474 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 29 | 29 | B.1.1.373 | 0.690476 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 28 | 28 | B.1.177.15 | 0.017666 |
ORF1ab/nsp3 | 749 | T749V | ACt | GTt | 27 | 27 | All | 0.000005 |
ORF1ab/nsp3 | 749 | T749V | ACt | GTt | 27 | 27 | B.1.1.7 | 0.000024 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 26 | 26 | AY.5 | 0.000537 |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 23 | 24 | B.1.1.7 | 0.000021 |
ORF1ab/nsp3 | 749 | T749T | acT | acA | 1 | 24 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 749 | T749N | aCt | aAt | 23 | 23 | B.1.139 | 0.016862 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 21 | 21 | AY.75 | 0.001176 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 20 | 20 | AY.4.2 | 0.000434 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 20 | 20 | AY.42 | 0.000805 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 20 | 20 | AY.98.1 | 0.000969 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 19 | 19 | AY.29 | 0.0003 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 19 | 19 | B | 0.002428 |
ORF1ab/nsp3 | 749 | T749del | ACT | --- | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 17 | 17 | AY.33 | 0.001135 |
ORF1ab/nsp3 | 749 | T749del1 | aCt | a-t | 10 | 15 | All | 0.000002 |
ORF1ab/nsp3 | 749 | T749del1 | acT | ac- | 4 | 15 | All | 0.000001 |
ORF1ab/nsp3 | 749 | T749del1 | ACt | -Tt | 1 | 15 | All | 0 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 15 | 15 | B.1.1.333 | 0.016146 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 15 | 15 | B.1.177.69 | 0.022255 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 15 | 15 | B.1.243 | 0.001044 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 14 | 14 | AY.46.3 | 0.013072 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 14 | 14 | B.1.258 | 0.000932 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 14 | 14 | B.1.429 | 0.000329 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 14 | 14 | B.1.526 | 0.000329 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 13 | 13 | AY.118 | 0.000814 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 13 | 13 | AY.3.1 | 0.001108 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 13 | 13 | AY.39 | 0.000321 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 13 | 13 | AY.9.2 | 0.000477 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 13 | 13 | B.1.177.34 | 0.684211 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 13 | 13 | B.1.427 | 0.000656 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 12 | 12 | AY.24 | 0.005172 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 12 | 12 | B.1.369 | 0.003423 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 12 | 12 | B.1.525 | 0.001358 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 11 | 11 | AY.39.1 | 0.000436 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 11 | 11 | AY.4.5 | 0.001182 |
ORF1ab/nsp3 | 749 | T749N | aCt | aAt | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 11 | 11 | P.1.14 | 0.000526 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 10 | 10 | AY.74 | 0.001156 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 10 | 10 | B.1.1.319 | 0.175439 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 10 | 10 | B.1.195 | 0.050251 |
ORF1ab/nsp3 | 749 | T749S | Act | Tct | 5 | 9 | All | 0.000001 |
ORF1ab/nsp3 | 749 | T749S | AcT | TcC | 2 | 9 | All | 0 |
ORF1ab/nsp3 | 749 | T749S | aCt | aGt | 1 | 9 | All | 0 |
ORF1ab/nsp3 | 749 | T749S | AcT | TcA | 1 | 9 | All | 0 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 9 | 9 | B.1.1.434 | 0.003137 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 9 | 9 | P.1.2 | 0.010405 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 8 | 8 | AY.120 | 0.000297 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 8 | 8 | AY.20 | 0.000311 |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 7 | 8 | AY.4 | 0.000011 |
ORF1ab/nsp3 | 749 | T749T | acT | acG | 1 | 8 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 8 | 8 | B.1.1.28 | 0.00249 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 8 | 8 | B.1.160 | 0.00025 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 8 | 8 | B.1.177.73 | 0.00453 |
ORF1ab/nsp3 | 749 | T749N | aCt | aAt | 8 | 8 | B.1.36 | 0.001167 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 8 | 8 | B.1.568 | 0.008889 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 7 | 7 | AY.117 | 0.000592 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 7 | 7 | AY.14 | 0.000616 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 7 | 7 | AY.23 | 0.000488 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 7 | 7 | AY.45 | 0.000852 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 7 | 7 | AY.9.1 | 0.000586 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 7 | 7 | B.1.1.253 | 0.017544 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 7 | 7 | B.1.1.33 | 0.002946 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 7 | 7 | B.1.1.519 | 0.000278 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 7 | 7 | B.1.564 | 0.002981 |
ORF1ab/nsp3 | 749 | T749del1 | aCt | a-t | 7 | 7 | B.1.617.1 | 0.000903 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 7 | 7 | D.2 | 0.000525 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 6 | 6 | A.7 | 0.333333 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 6 | 6 | AY.104 | 0.011905 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 6 | 6 | AZ.2 | 0.004926 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 6 | 6 | B.1.1.284 | 0.000644 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 6 | 6 | B.1.126 | 0.007653 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 6 | 6 | B.1.214 | 0.021978 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 6 | 6 | B.1.438.1 | 0.000644 |
ORF1ab/nsp3 | 749 | T749N | aCt | aAt | 6 | 6 | B.1.525 | 0.000679 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 6 | 6 | B.1.621 | 0.000531 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 6 | 6 | Q.2 | 0.003681 |
ORF1ab/nsp3 | 749 | T749T | acT | acA | 3 | 5 | 0.166667 | |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 2 | 5 | 0.111111 | |
ORF1ab/nsp3 | 749 | T749D | ACT | GAC | 3 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 749 | T749D | ACt | GAt | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 5 | 5 | AY.12 | 0.00158 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 5 | 5 | AY.34 | 0.000485 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 5 | 5 | AY.46.6 | 0.000361 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 5 | 5 | AY.54 | 0.000477 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 5 | 5 | B.1.1.528 | 0.024038 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 5 | 5 | B.1.1.63 | 0.001929 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 5 | 5 | B.1.628 | 0.001762 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 5 | 5 | N.5 | 0.008834 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 5 | 5 | P.1.1 | 0.001588 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 5 | 5 | Q.1 | 0.000632 |
ORF1ab/nsp3 | 749 | T749S | Act | Tct | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 749 | T749S | AcT | TcC | 1 | 4 | 0.055556 | |
ORF1ab/nsp3 | 749 | T749S | AcT | TcA | 1 | 4 | 0.055556 | |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 4 | 4 | A.21 | 0.01108 |
ORF1ab/nsp3 | 749 | T749Y | ACt | TAt | 3 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 749 | T749Y | ACT | TAC | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 4 | 4 | AY.108 | 0.00441 |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 4 | 4 | B.1.1.216 | 0.003562 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 4 | 4 | B.1.1.25 | 0.002274 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 4 | 4 | B.1.1.39 | 0.002039 |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 4 | 4 | B.1.160.16 | 0.003717 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 4 | 4 | B.1.177.60 | 0.000874 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 4 | 4 | B.1.258.17 | 0.000416 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 4 | 4 | B.1.425 | 0.011976 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp3 | 749 | T749Y | ACt | TAt | 2 | 3 | 0.111111 | |
ORF1ab/nsp3 | 749 | T749N | aCt | aAt | 2 | 3 | 0.111111 | |
ORF1ab/nsp3 | 749 | T749D | ACT | GAC | 2 | 3 | 0.111111 | |
ORF1ab/nsp3 | 749 | T749Y | ACT | TAC | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 749 | T749N | aCT | aAC | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 749 | T749D | ACt | GAt | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 3 | 3 | AY.4.4 | 0.001227 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 3 | 3 | B.1.1.135 | 0.014085 |
ORF1ab/nsp3 | 749 | T749N | aCt | aAt | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 3 | 3 | B.1.177.62 | 0.003576 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp3 | 749 | T749N | aCt | aAt | 2 | 3 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 749 | T749N | aCT | aAC | 1 | 3 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 3 | 3 | B.1.561 | 0.001191 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 3 | 3 | B.1.576 | 0.00272 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 3 | 3 | B.1.621.1 | 0.001517 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 3 | 3 | C.30 | 0.005181 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp3 | 749 | T749F | ACt | TTt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 749 | T749A | AcT | GcA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 749 | T749I | aCT | aTC | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 749 | T749F | ACT | TTC | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 749 | T749F | ACT | TTC | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 749 | T749F | ACt | TTt | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 749 | T749N | aCt | aAt | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 749 | T749del1 | acT | ac- | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 749 | T749del1 | aCt | a-t | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 749 | T749N | aCt | aAt | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | AY.63 | 0.000774 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 749 | T749N | aCt | aAt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 749 | T749del1 | aCt | a-t | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 749 | T749del1 | acT | ac- | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 749 | T749T | acT | acA | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | B.1.1.351 | 0.005587 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp3 | 749 | T749del | ACT | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | B.1.177.36 | 0.032258 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | B.1.177.8 | 0.001505 |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 749 | T749D | ACt | GAt | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 749 | T749D | ACT | GAC | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 749 | T749A | AcT | GcC | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | B.1.237 | 0.00995 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp3 | 749 | T749del | ACT | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | B.1.588 | 0.00182 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | C.35 | 0.001548 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | C.36.3 | 0.001134 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 749 | T749E | ACT | GAA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 749 | T749X | ACT | TAA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 749 | T749K | aCT | aAA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 749 | T749del | ACT | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 749 | T749del | ACT | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp3 | 749 | T749K | aCT | aAA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 749 | T749P | Act | Cct | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 749 | T749L | ACt | CTt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 749 | T749del2 | aCT | a-- | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 749 | T749X | ACT | TAA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 749 | T749E | ACT | GAA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 749 | T749del1 | acT | ac- | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 749 | T749N | aCt | aAt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 749 | T749N | aCt | aAt | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 749 | T749del1 | ACt | -Tt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 749 | T749del | ACT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 749 | T749P | Act | Cct | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 749 | T749del2 | aCT | a-- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 749 | T749S | aCt | aGt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 749 | T749N | aCt | aAt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp3 | 749 | T749N | aCt | aAt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 749 | T749N | aCt | aAt | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 749 | T749I | aCT | aTC | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 749 | T749S | Act | Tct | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 749 | T749S | Act | Tct | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 749 | T749N | aCt | aAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp3 | 749 | T749del | ACT | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp3 | 749 | T749del | ACT | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.1.204 | 0.00304 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.1.3 | 0.008696 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.1.338 | 0.017241 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 1 | 1 | B.1.1.362 | 0.005618 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.1.391 | 0.008547 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.1.442 | 0.018519 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp3 | 749 | T749S | AcT | TcC | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp3 | 749 | T749del | ACT | --- | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 749 | T749del | ACT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.160.32 | 0.004292 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.162 | 0.005025 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp3 | 749 | T749N | aCt | aAt | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp3 | 749 | T749del | ACT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 749 | T749del | ACT | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 749 | T749N | aCt | aAt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 749 | T749Y | ACt | TAt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 749 | T749del1 | acT | ac- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 749 | T749del1 | aCt | a-t | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.221.2 | 0.004016 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp3 | 749 | T749N | aCt | aAt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp3 | 749 | T749del | ACT | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.348 | 0.018182 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp3 | 749 | T749N | aCt | aAt | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.39 | 0.003906 |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 749 | T749del | ACT | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 749 | T749del | ACT | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.478 | 0.011765 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.537 | 0.02 |
ORF1ab/nsp3 | 749 | T749N | aCt | aAt | 1 | 1 | B.1.541 | 0.004425 |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 1 | 1 | B.1.541 | 0.004425 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp3 | 749 | T749del | ACT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 749 | T749del | ACT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 749 | T749L | ACt | CTt | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 749 | T749N | aCt | aAt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 749 | T749N | aCt | aAt | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 749 | T749del | ACT | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp3 | 749 | T749T | acT | acA | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | B.6.8 | 0.008264 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | C.36.1 | 0.004149 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 749 | T749S | Act | Tct | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 749 | T749T | acT | acC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 749 | T749N | aCt | aAt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 749 | T749del | ACT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp3 | 749 | T749N | aCt | aAt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 749 | T749A | Act | Gct | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 749 | T749I | aCt | aTt | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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