CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 744 | L744S | L1562S | nonsyn | tTG | tCA | 441 | 293 | 0.664399 | 4949-4951 |
ORF1ab/nsp3 | 744 | L744S | L1562S | nonsyn | tTg | tCg | 441 | 148 | 0.335601 | 4949-4951 |
ORF1ab/nsp3 | 744 | L744L | L1562L | syn | Ttg | Ctg | 382 | 264 | 0.691099 | 4949-4951 |
ORF1ab/nsp3 | 744 | L744L | L1562L | syn | ttG | ttA | 382 | 115 | 0.301047 | 4949-4951 |
ORF1ab/nsp3 | 744 | L744L | L1562L | syn | TtG | CtT | 382 | 3 | 0.0078534 | 4949-4951 |
ORF1ab/nsp3 | 744 | L744F | L1562F | nonsyn | ttG | ttT | 116 | 77 | 0.663793 | 4949-4951 |
ORF1ab/nsp3 | 744 | L744F | L1562F | nonsyn | ttG | ttC | 116 | 39 | 0.336207 | 4949-4951 |
ORF1ab/nsp3 | 744 | L744del | L1562del | del | TTG | --- | 52 | 52 | 1 | 4949-4951 |
ORF1ab/nsp3 | 744 | L744M | L1562M | nonsyn | Ttg | Atg | 25 | 25 | 1 | 4949-4951 |
ORF1ab/nsp3 | 744 | L744V | L1562V | nonsyn | Ttg | Gtg | 20 | 19 | 0.95 | 4949-4951 |
ORF1ab/nsp3 | 744 | L744V | L1562V | nonsyn | TtG | GtT | 20 | 1 | 0.05 | 4949-4951 |
ORF1ab/nsp3 | 744 | L744K | L1562K | nonsyn | TTg | AAg | 8 | 8 | 1 | 4949-4951 |
ORF1ab/nsp3 | 744 | L744X | L1562X | nonsyn | tTg | tAg | 6 | 4 | 0.666667 | 4949-4951 |
ORF1ab/nsp3 | 744 | L744X | L1562X | nonsyn | tTG | tAA | 6 | 1 | 0.166667 | 4949-4951 |
ORF1ab/nsp3 | 744 | L744X | L1562X | nonsyn | tTG | tGA | 6 | 1 | 0.166667 | 4949-4951 |
ORF1ab/nsp3 | 744 | L744W | L1562W | nonsyn | tTg | tGg | 4 | 4 | 1 | 4949-4951 |
ORF1ab/nsp3 | 744 | L744C | L1562C | nonsyn | tTG | tGT | 3 | 3 | 1 | 4949-4951 |
ORF1ab/nsp3 | 744 | L744del2 | L1562del2 | del | TTg | --g | 3 | 2 | 0.666667 | 4949-4951 |
ORF1ab/nsp3 | 744 | L744del2 | L1562del2 | del | tTG | t-- | 3 | 1 | 0.333333 | 4949-4951 |
ORF1ab/nsp3 | 744 | L744del1 | L1562del1 | del | ttG | tt- | 1 | 1 | 1 | 4949-4951 |
ORF1ab/nsp3 | 744 | L744P | L1562P | nonsyn | TTg | CCg | 1 | 1 | 1 | 4949-4951 |
ORF1ab/nsp3 | 744 | L744Q | L1562Q | nonsyn | TTG | CAA | 1 | 1 | 1 | 4949-4951 |
ORF1ab/nsp3 | 744 | L744T | L1562T | nonsyn | TTG | ACA | 1 | 1 | 1 | 4949-4951 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 744 | L744S | tTG | tCA | 293 | 441 | All | 0.000056 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 148 | 441 | All | 0.000028 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 264 | 382 | All | 0.00005 |
ORF1ab/nsp3 | 744 | L744L | ttG | ttA | 115 | 382 | All | 0.000022 |
ORF1ab/nsp3 | 744 | L744L | TtG | CtT | 3 | 382 | All | 0.000001 |
ORF1ab/nsp3 | 744 | L744S | tTG | tCA | 277 | 298 | B.1 | 0.002537 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 21 | 298 | B.1 | 0.000192 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 77 | 116 | All | 0.000015 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttC | 39 | 116 | All | 0.000007 |
ORF1ab/nsp3 | 744 | L744L | ttG | ttA | 57 | 110 | B.1.1.7 | 0.000051 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 53 | 110 | B.1.1.7 | 0.000047 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 56 | 56 | B.15 | 0.982456 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 53 | 53 | AY.6 | 0.00218 |
ORF1ab/nsp3 | 744 | L744del | TTG | --- | 52 | 52 | All | 0.00001 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 40 | 40 | AY.44 | 0.000243 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 31 | 34 | B.1.1.7 | 0.000028 |
ORF1ab/nsp3 | 744 | L744S | tTG | tCA | 3 | 34 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 744 | L744M | Ttg | Atg | 25 | 25 | All | 0.000005 |
ORF1ab/nsp3 | 744 | L744del | TTG | --- | 24 | 24 | B.1.1.7 | 0.000021 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 23 | 23 | R.1 | 0.00207 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 18 | 22 | B.1.1.7 | 0.000016 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttC | 4 | 22 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 744 | L744V | Ttg | Gtg | 19 | 20 | All | 0.000004 |
ORF1ab/nsp3 | 744 | L744V | TtG | GtT | 1 | 20 | All | 0 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttC | 17 | 19 | B.1 | 0.000156 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 2 | 19 | B.1 | 0.000018 |
ORF1ab/nsp3 | 744 | L744L | ttG | ttA | 17 | 17 | B.1.243 | 0.001183 |
ORF1ab/nsp3 | 744 | L744L | ttG | ttA | 8 | 15 | B.1 | 0.000073 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 7 | 15 | B.1 | 0.000064 |
ORF1ab/nsp3 | 744 | L744M | Ttg | Atg | 15 | 15 | B.1.351 | 0.000446 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 12 | 12 | B.1.221 | 0.000852 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 11 | 12 | B.1.617.2 | 0.000041 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttC | 1 | 12 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 744 | L744L | ttG | ttA | 8 | 12 | P.1 | 0.000126 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 4 | 12 | P.1 | 0.000063 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 9 | 9 | AY.4.2 | 0.000195 |
ORF1ab/nsp3 | 744 | L744L | ttG | ttA | 4 | 9 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 4 | 9 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 744 | L744L | TtG | CtT | 1 | 9 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 744 | L744K | TTg | AAg | 8 | 8 | All | 0.000002 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 5 | 7 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttC | 2 | 7 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 744 | L744X | tTg | tAg | 4 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 744 | L744X | tTG | tAA | 1 | 6 | All | 0 |
ORF1ab/nsp3 | 744 | L744X | tTG | tGA | 1 | 6 | All | 0 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttC | 4 | 6 | AY.46 | 0.000416 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 2 | 6 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 6 | 6 | B.1.1.222 | 0.001224 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 4 | 6 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 744 | L744S | tTG | tCA | 2 | 6 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp3 | 744 | L744L | ttG | ttA | 4 | 5 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 1 | 5 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 744 | L744V | Ttg | Gtg | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp3 | 744 | L744W | tTg | tGg | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 4 | 4 | AY.70 | 0.000834 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 4 | 4 | AY.94 | 0.001771 |
ORF1ab/nsp3 | 744 | L744V | Ttg | Gtg | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp3 | 744 | L744del | TTG | --- | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 744 | L744L | ttG | ttA | 3 | 4 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 1 | 4 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 4 | 4 | B.1.210 | 0.008529 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp3 | 744 | L744S | tTG | tCA | 4 | 4 | B.1.9.5 | 0.022727 |
ORF1ab/nsp3 | 744 | L744L | TtG | CtT | 2 | 3 | 0.111111 | |
ORF1ab/nsp3 | 744 | L744L | ttG | ttA | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 744 | L744C | tTG | tGT | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 744 | L744del2 | TTg | --g | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 744 | L744del2 | tTG | t-- | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 2 | 3 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 744 | L744S | tTG | tCA | 1 | 3 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttC | 2 | 3 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 1 | 3 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp3 | 744 | L744M | Ttg | Atg | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 744 | L744X | tTg | tAg | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 744 | L744X | tTG | tAA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 744 | L744del | TTG | --- | 2 | 2 | A | 0.000774 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 744 | L744del | TTG | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttC | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 744 | L744K | TTg | AAg | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 744 | L744L | ttG | ttA | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 744 | L744V | Ttg | Gtg | 1 | 2 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 744 | L744V | TtG | GtT | 1 | 2 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 744 | L744V | Ttg | Gtg | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 744 | L744L | ttG | ttA | 2 | 2 | B.1.177.53 | 0.004785 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 744 | L744L | ttG | ttA | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 744 | L744del | TTG | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttC | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 744 | L744S | tTG | tCA | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 744 | L744del | TTG | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 744 | L744del1 | ttG | tt- | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 744 | L744T | TTG | ACA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 744 | L744Q | TTG | CAA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 744 | L744P | TTg | CCg | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 744 | L744W | tTg | tGg | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 744 | L744C | tTG | tGT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 744 | L744V | Ttg | Gtg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 744 | L744X | tTg | tAg | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 744 | L744S | tTG | tCA | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 744 | L744K | TTg | AAg | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 744 | L744M | Ttg | Atg | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 744 | L744V | Ttg | Gtg | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 744 | L744L | ttG | ttA | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 744 | L744L | ttG | ttA | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 744 | L744C | tTG | tGT | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 744 | L744del | TTG | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 744 | L744V | Ttg | Gtg | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 744 | L744V | Ttg | Gtg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 744 | L744V | Ttg | Gtg | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 744 | L744W | tTg | tGg | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 744 | L744L | ttG | ttA | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 744 | L744L | ttG | ttA | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 744 | L744L | ttG | ttA | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 744 | L744M | Ttg | Atg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 744 | L744del | TTG | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 744 | L744del1 | ttG | tt- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 744 | L744del | TTG | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 744 | L744del2 | TTg | --g | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 744 | L744del | TTG | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 744 | L744L | ttG | ttA | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 744 | L744del2 | tTG | t-- | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 744 | L744M | Ttg | Atg | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 744 | L744K | TTg | AAg | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 744 | L744K | TTg | AAg | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 744 | L744V | Ttg | Gtg | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 744 | L744M | Ttg | Atg | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 744 | L744X | tTg | tAg | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 744 | L744L | ttG | ttA | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 744 | L744X | tTg | tAg | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 744 | L744M | Ttg | Atg | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 744 | L744K | TTg | AAg | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 744 | L744W | tTg | tGg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 744 | L744M | Ttg | Atg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 744 | L744X | tTG | tGA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 744 | L744C | tTG | tGT | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttC | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 1 | 1 | B.1.1.128 | 0.007092 |
ORF1ab/nsp3 | 744 | L744del | TTG | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp3 | 744 | L744del | TTG | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp3 | 744 | L744P | TTg | CCg | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 744 | L744V | Ttg | Gtg | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 744 | L744del2 | TTg | --g | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 744 | L744Q | TTG | CAA | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp3 | 744 | L744del | TTG | --- | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 744 | L744del | TTG | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttC | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 744 | L744del | TTG | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttC | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 744 | L744del | TTG | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 744 | L744S | tTG | tCA | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 744 | L744del | TTG | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 744 | L744K | TTg | AAg | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 744 | L744S | tTG | tCA | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 744 | L744del | TTG | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 744 | L744L | ttG | ttA | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 744 | L744del | TTG | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 744 | L744K | TTg | AAg | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 744 | L744T | TTG | ACA | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 744 | L744S | tTG | tCA | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp3 | 744 | L744del | TTG | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 744 | L744M | Ttg | Atg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 744 | L744del | TTG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 744 | L744L | ttG | ttA | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttC | 1 | 1 | B.1.81 | 0.021277 |
ORF1ab/nsp3 | 744 | L744S | tTG | tCA | 1 | 1 | B.1.88.1 | 0.004808 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 1 | 1 | B.1.9.4 | 0.006135 |
ORF1ab/nsp3 | 744 | L744del | TTG | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 744 | L744W | tTg | tGg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 744 | L744S | tTg | tCg | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 744 | L744del | TTG | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 744 | L744F | ttG | ttT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 744 | L744L | Ttg | Ctg | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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