CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 74 & Codon = Tca

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp374P74SP892SnonsynCcaTca4569456912939-2941

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp374P74SCcaTca45694569All0.000874
ORF1ab/nsp374P74SCcaTca861861AY.1050.553698
ORF1ab/nsp374P74SCcaTca812812AY.40.001264
ORF1ab/nsp374P74SCcaTca469469B.1.1.70.00042
ORF1ab/nsp374P74SCcaTca209209B.1.1990.863636
ORF1ab/nsp374P74SCcaTca200200AY.1030.001242
ORF1ab/nsp374P74SCcaTca188188AY.430.000833
ORF1ab/nsp374P74SCcaTca162162B.1.617.20.00061
ORF1ab/nsp374P74SCcaTca159159B.1.20.0014
ORF1ab/nsp374P74SCcaTca120120AY.250.000722
ORF1ab/nsp374P74SCcaTca111111B.10.001017
ORF1ab/nsp374P74SCcaTca8484P.10.001323
ORF1ab/nsp374P74SCcaTca6565B.1.1600.002027
ORF1ab/nsp374P74SCcaTca5858B.1.5750.017597
ORF1ab/nsp374P74SCcaTca5050AY.290.000789
ORF1ab/nsp374P74SCcaTca4444AY.440.000268
ORF1ab/nsp374P74SCcaTca4343B.1.177.40.009076
ORF1ab/nsp374P74SCcaTca3636B.1.4290.000847
ORF1ab/nsp374P74SCcaTca3535B.1.5260.000823
ORF1ab/nsp374P74SCcaTca3333B.1.10.000599
ORF1ab/nsp374P74SCcaTca3333B.1.1770.000435
ORF1ab/nsp374P74SCcaTca3232AY.30.000318
ORF1ab/nsp374P74SCcaTca2828B.1.2400.006036
ORF1ab/nsp374P74SCcaTca2727B.1.3510.000803
ORF1ab/nsp374P74SCcaTca2323B.1.2580.001531
ORF1ab/nsp374P74SCcaTca2222B.1.1.2770.016692
ORF1ab/nsp374P74SCcaTca2121B.1.3091
ORF1ab/nsp374P74SCcaTca1919B.1.36.380.031199
ORF1ab/nsp374P74SCcaTca1818AY.260.00051
ORF1ab/nsp374P74SCcaTca1818B.1.1.1890.027231
ORF1ab/nsp374P74SCcaTca1717B.1.1.5190.000675
ORF1ab/nsp374P74SCcaTca1616AY.640.009524
ORF1ab/nsp374P74SCcaTca1515AY.3.10.001279
ORF1ab/nsp374P74SCcaTca1515AY.740.001735
ORF1ab/nsp374P74SCcaTca1515B.1.177.730.008494
ORF1ab/nsp374P74SCcaTca1414AY.150.031111
ORF1ab/nsp374P74SCcaTca1414AY.4.20.000304
ORF1ab/nsp374P74SCcaTca1414B.1.1.390.007136
ORF1ab/nsp374P74SCcaTca1212AY.420.000483
ORF1ab/nsp374P74SCcaTca1212AY.50.000248
ORF1ab/nsp374P74SCcaTca1111AY.200.000428
ORF1ab/nsp374P74SCcaTca1111B.1.5250.001245
ORF1ab/nsp374P74SCcaTca1010AY.9.20.000367
ORF1ab/nsp374P74SCcaTca1010P.1.150.002323
ORF1ab/nsp374P74SCcaTca99AY.1170.000761
ORF1ab/nsp374P74SCcaTca99B.1.3200.011208
ORF1ab/nsp374P74SCcaTca88AY.9.10.00067
ORF1ab/nsp374P74SCcaTca88P.1.160.002993
ORF1ab/nsp374P74SCcaTca77B.1.1.4640.010309
ORF1ab/nsp374P74SCcaTca77B.1.36.290.003621
ORF1ab/nsp374P74SCcaTca77B.1.6370.000512
ORF1ab/nsp374P74SCcaTca66AY.470.000187
ORF1ab/nsp374P74SCcaTca66AY.980.000474
ORF1ab/nsp374P74SCcaTca66B.1.1.250.003411
ORF1ab/nsp374P74SCcaTca66B.1.177.120.00091
ORF1ab/nsp374P74SCcaTca66B.1.177.580.007989
ORF1ab/nsp374P74SCcaTca66B.1.2210.000426
ORF1ab/nsp374P74SCcaTca66B.1.466.20.002347
ORF1ab/nsp374P74SCcaTca55AY.39.10.000198
ORF1ab/nsp374P74SCcaTca55AY.540.000477
ORF1ab/nsp374P74SCcaTca55AY.90.000338
ORF1ab/nsp374P74SCcaTca55B.1.1.1920.011547
ORF1ab/nsp374P74SCcaTca55B.1.360.00073
ORF1ab/nsp374P74SCcaTca55B.1.5960.000436
ORF1ab/nsp374P74SCcaTca55N.40.021277
ORF1ab/nsp374P74SCcaTca44AY.1000.000184
ORF1ab/nsp374P74SCcaTca44AY.1160.001147
ORF1ab/nsp374P74SCcaTca44B.1.1.3010.004717
ORF1ab/nsp374P74SCcaTca44B.1.1.370.000771
ORF1ab/nsp374P74SCcaTca44B.1.36.340.085106
ORF1ab/nsp374P74SCcaTca44B.1.4010.032787
ORF1ab/nsp374P74SCcaTca44B.1.438.10.000429
ORF1ab/nsp374P74SCcaTca44B.1.4890.173913
ORF1ab/nsp374P74SCcaTca44B.1.5580.018265
ORF1ab/nsp374P74SCcaTca44C.360.003643
ORF1ab/nsp374P74SCcaTca44P.1.140.000191
ORF1ab/nsp374P74SCcaTca44P.1.60.007782
ORF1ab/nsp374P74SCcaTca33AY.1180.000188
ORF1ab/nsp374P74SCcaTca33AY.1190.000106
ORF1ab/nsp374P74SCcaTca33AY.230.000209
ORF1ab/nsp374P74SCcaTca33AY.270.000194
ORF1ab/nsp374P74SCcaTca33AY.400.002893
ORF1ab/nsp374P74SCcaTca33AY.450.000365
ORF1ab/nsp374P74SCcaTca33AY.46.40.000494
ORF1ab/nsp374P74SCcaTca33AY.46.60.000217
ORF1ab/nsp374P74SCcaTca33AY.480.001395
ORF1ab/nsp374P74SCcaTca33AY.690.00056
ORF1ab/nsp374P74SCcaTca33AY.75.10.000541
ORF1ab/nsp374P74SCcaTca33AY.880.002653
ORF1ab/nsp374P74SCcaTca33AY.99.10.004658
ORF1ab/nsp374P74SCcaTca33B.1.1.2530.007519
ORF1ab/nsp374P74SCcaTca33B.1.1390.002199
ORF1ab/nsp374P74SCcaTca33B.1.2430.000209
ORF1ab/nsp374P74SCcaTca33B.1.258.170.000312
ORF1ab/nsp374P74SCcaTca33B.1.3620.004622
ORF1ab/nsp374P74SCcaTca33B.1.3690.000856
ORF1ab/nsp374P74SCcaTca33B.1.4090.002344
ORF1ab/nsp374P74SCcaTca33C.160.003181
ORF1ab/nsp374P74SCcaTca33D.20.000225
ORF1ab/nsp374P74SCcaTca33Q.10.000379
ORF1ab/nsp374P74SCcaTca22A.20.001324
ORF1ab/nsp374P74SCcaTca22A.23.10.001408
ORF1ab/nsp374P74SCcaTca22AY.1040.003968
ORF1ab/nsp374P74SCcaTca22AY.1200.000074
ORF1ab/nsp374P74SCcaTca22AY.130.000322
ORF1ab/nsp374P74SCcaTca22AY.29.10.000441
ORF1ab/nsp374P74SCcaTca22AY.340.000194
ORF1ab/nsp374P74SCcaTca22AY.46.10.002053
ORF1ab/nsp374P74SCcaTca22AY.550.001835
ORF1ab/nsp374P74SCcaTca22AY.680.000547
ORF1ab/nsp374P74SCcaTca22AY.98.10.000097
ORF1ab/nsp374P74SCcaTca22AY.99.20.000184
ORF1ab/nsp374P74SCcaTca22B.1.1.1210.004854
ORF1ab/nsp374P74SCcaTca22B.1.1.1760.000879
ORF1ab/nsp374P74SCcaTca22B.1.1.2090.017857
ORF1ab/nsp374P74SCcaTca22B.1.1.2200.003717
ORF1ab/nsp374P74SCcaTca22B.1.1.2390.064516
ORF1ab/nsp374P74SCcaTca22B.1.1.2630.003115
ORF1ab/nsp374P74SCcaTca22B.1.1.280.000622
ORF1ab/nsp374P74SCcaTca22B.1.1.330.000842
ORF1ab/nsp374P74SCcaTca22B.1.1.3720.001377
ORF1ab/nsp374P74SCcaTca22B.1.177.210.000153
ORF1ab/nsp374P74SCcaTca22B.1.2320.001075
ORF1ab/nsp374P74SCcaTca22B.1.2340.000264
ORF1ab/nsp374P74SCcaTca22B.1.4270.000101
ORF1ab/nsp374P74SCcaTca22B.1.5090.001732
ORF1ab/nsp374P74SCcaTca22B.1.5490.014388
ORF1ab/nsp374P74SCcaTca22B.1.6090.000959
ORF1ab/nsp374P74SCcaTca22B.1.88.10.009615
ORF1ab/nsp374P74SCcaTca22B.390.004662
ORF1ab/nsp374P74SCcaTca22C.370.000232
ORF1ab/nsp374P74SCcaTca22R.10.00018
ORF1ab/nsp374P74SCcaTca11A0.000387
ORF1ab/nsp374P74SCcaTca11A.2.20.001689
ORF1ab/nsp374P74SCcaTca11AY.1020.000027
ORF1ab/nsp374P74SCcaTca11AY.1130.000142
ORF1ab/nsp374P74SCcaTca11AY.160.00038
ORF1ab/nsp374P74SCcaTca11AY.190.00114
ORF1ab/nsp374P74SCcaTca11AY.20.000356
ORF1ab/nsp374P74SCcaTca11AY.240.000431
ORF1ab/nsp374P74SCcaTca11AY.300.000396
ORF1ab/nsp374P74SCcaTca11AY.320.000532
ORF1ab/nsp374P74SCcaTca11AY.350.000233
ORF1ab/nsp374P74SCcaTca11AY.390.000025
ORF1ab/nsp374P74SCcaTca11AY.4.2.10.000149
ORF1ab/nsp374P74SCcaTca11AY.4.40.000409
ORF1ab/nsp374P74SCcaTca11AY.460.000104
ORF1ab/nsp374P74SCcaTca11AY.5.30.000337
ORF1ab/nsp374P74SCcaTca11AY.520.000814
ORF1ab/nsp374P74SCcaTca11AY.530.000288
ORF1ab/nsp374P74SCcaTca11AY.60.000041
ORF1ab/nsp374P74SCcaTca11AY.650.000533
ORF1ab/nsp374P74SCcaTca11AY.7.10.000113
ORF1ab/nsp374P74SCcaTca11AY.710.000475
ORF1ab/nsp374P74SCcaTca11AY.80.000606
ORF1ab/nsp374P74SCcaTca11AY.810.001992
ORF1ab/nsp374P74SCcaTca11AY.900.000684
ORF1ab/nsp374P74SCcaTca11AY.920.000287
ORF1ab/nsp374P74SCcaTca11AY.930.000273
ORF1ab/nsp374P74SCcaTca11B0.000128
ORF1ab/nsp374P74SCcaTca11B.1.1.1610.003534
ORF1ab/nsp374P74SCcaTca11B.1.1.1700.001247
ORF1ab/nsp374P74SCcaTca11B.1.1.1980.001468
ORF1ab/nsp374P74SCcaTca11B.1.1.2140.000055
ORF1ab/nsp374P74SCcaTca11B.1.1.2430.004082
ORF1ab/nsp374P74SCcaTca11B.1.1.2650.003155
ORF1ab/nsp374P74SCcaTca11B.1.1.270.00565
ORF1ab/nsp374P74SCcaTca11B.1.1.2750.011236
ORF1ab/nsp374P74SCcaTca11B.1.1.2910.000742
ORF1ab/nsp374P74SCcaTca11B.1.1.3070.002532
ORF1ab/nsp374P74SCcaTca11B.1.1.3180.000302
ORF1ab/nsp374P74SCcaTca11B.1.1.3480.000796
ORF1ab/nsp374P74SCcaTca11B.1.1.3690.000446
ORF1ab/nsp374P74SCcaTca11B.1.1.4120.007634
ORF1ab/nsp374P74SCcaTca11B.1.1.4480.002033
ORF1ab/nsp374P74SCcaTca11B.1.1.500.000679
ORF1ab/nsp374P74SCcaTca11B.1.1.700.000341
ORF1ab/nsp374P74SCcaTca11B.1.1.80.003584
ORF1ab/nsp374P74SCcaTca11B.1.110.30.000718
ORF1ab/nsp374P74SCcaTca11B.1.160.260.002421
ORF1ab/nsp374P74SCcaTca11B.1.160.310.008065
ORF1ab/nsp374P74SCcaTca11B.1.177.170.000821
ORF1ab/nsp374P74SCcaTca11B.1.177.180.00116
ORF1ab/nsp374P74SCcaTca11B.1.177.200.001517
ORF1ab/nsp374P74SCcaTca11B.1.177.230.003236
ORF1ab/nsp374P74SCcaTca11B.1.177.390.015385
ORF1ab/nsp374P74SCcaTca11B.1.177.530.002392
ORF1ab/nsp374P74SCcaTca11B.1.177.620.001192
ORF1ab/nsp374P74SCcaTca11B.1.177.70.000165
ORF1ab/nsp374P74SCcaTca11B.1.2180.005155
ORF1ab/nsp374P74SCcaTca11B.1.2220.001692
ORF1ab/nsp374P74SCcaTca11B.1.2470.014925
ORF1ab/nsp374P74SCcaTca11B.1.2890.00266
ORF1ab/nsp374P74SCcaTca11B.1.2980.002114
ORF1ab/nsp374P74SCcaTca11B.1.3110.000275
ORF1ab/nsp374P74SCcaTca11B.1.3280.03125
ORF1ab/nsp374P74SCcaTca11B.1.351.30.000876
ORF1ab/nsp374P74SCcaTca11B.1.36.190.009259
ORF1ab/nsp374P74SCcaTca11B.1.36.330.007576
ORF1ab/nsp374P74SCcaTca11B.1.3610.001289
ORF1ab/nsp374P74SCcaTca11B.1.3990.001934
ORF1ab/nsp374P74SCcaTca11B.1.4040.001302
ORF1ab/nsp374P74SCcaTca11B.1.4590.004082
ORF1ab/nsp374P74SCcaTca11B.1.4800.002488
ORF1ab/nsp374P74SCcaTca11B.1.5640.000426
ORF1ab/nsp374P74SCcaTca11B.1.5760.000907
ORF1ab/nsp374P74SCcaTca11B.1.5770.000687
ORF1ab/nsp374P74SCcaTca11B.1.5820.000491
ORF1ab/nsp374P74SCcaTca11B.1.617.10.000129
ORF1ab/nsp374P74SCcaTca11B.1.617.30.002985
ORF1ab/nsp374P74SCcaTca11B.1.6210.000089
ORF1ab/nsp374P74SCcaTca11B.1.6280.000352
ORF1ab/nsp374P74SCcaTca11B.40.002208
ORF1ab/nsp374P74SCcaTca11B.400.000364
ORF1ab/nsp374P74SCcaTca11B.550.00295
ORF1ab/nsp374P74SCcaTca11C.36.30.000567
ORF1ab/nsp374P74SCcaTca11C.80.004464
ORF1ab/nsp374P74SCcaTca11N.30.005814
ORF1ab/nsp374P74SCcaTca11N.50.001767
ORF1ab/nsp374P74SCcaTca11P.20.000187
ORF1ab/nsp374P74SCcaTca11Q.30.000145
ORF1ab/nsp374P74SCcaTca11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.