CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 737 | N737D | N1555D | nonsyn | Aat | Gat | 3877 | 3875 | 0.999484 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737D | N1555D | nonsyn | AaT | GaC | 3877 | 2 | 0.000515863 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737N | N1555N | syn | aaT | aaC | 1360 | 1360 | 1 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737S | N1555S | nonsyn | aAt | aGt | 173 | 171 | 0.988439 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737S | N1555S | nonsyn | aAT | aGC | 173 | 2 | 0.0115607 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737T | N1555T | nonsyn | aAt | aCt | 140 | 137 | 0.978571 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737T | N1555T | nonsyn | aAT | aCC | 140 | 3 | 0.0214286 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737del | N1555del | del | AAT | --- | 61 | 61 | 1 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737Y | N1555Y | nonsyn | Aat | Tat | 24 | 22 | 0.916667 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737Y | N1555Y | nonsyn | AaT | TaC | 24 | 2 | 0.0833333 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737K | N1555K | nonsyn | aaT | aaG | 23 | 21 | 0.913043 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737K | N1555K | nonsyn | aaT | aaA | 23 | 2 | 0.0869565 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737V | N1555V | nonsyn | AAT | GTC | 7 | 3 | 0.428571 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737V | N1555V | nonsyn | AAT | GTA | 7 | 2 | 0.285714 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737V | N1555V | nonsyn | AAt | GTt | 7 | 2 | 0.285714 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737H | N1555H | nonsyn | Aat | Cat | 5 | 4 | 0.8 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737H | N1555H | nonsyn | AaT | CaC | 5 | 1 | 0.2 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737F | N1555F | nonsyn | AAt | TTt | 4 | 2 | 0.5 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737F | N1555F | nonsyn | AAT | TTC | 4 | 2 | 0.5 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737E | N1555E | nonsyn | AaT | GaA | 3 | 3 | 1 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737X | N1555X | nonsyn | AaT | TaA | 3 | 3 | 1 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737R | N1555R | nonsyn | AAt | CGt | 3 | 2 | 0.666667 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737R | N1555R | nonsyn | aAT | aGA | 3 | 1 | 0.333333 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737L | N1555L | nonsyn | AAT | TTA | 2 | 2 | 1 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737G | N1555G | nonsyn | AAT | GGA | 2 | 1 | 0.5 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737P | N1555P | nonsyn | AAt | CCt | 2 | 1 | 0.5 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737P | N1555P | nonsyn | AAT | CCC | 2 | 1 | 0.5 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737G | N1555G | nonsyn | AAt | GGt | 2 | 1 | 0.5 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737C | N1555C | nonsyn | AAt | TGt | 1 | 1 | 1 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737del1 | N1555del1 | del | Aat | -at | 1 | 1 | 1 | 4928-4930 |
ORF1ab/nsp3 | 737 | N737I | N1555I | nonsyn | aAt | aTt | 1 | 1 | 1 | 4928-4930 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 3875 | 3877 | All | 0.000741 |
ORF1ab/nsp3 | 737 | N737D | AaT | GaC | 2 | 3877 | All | 0 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 3537 | 3537 | AY.6 | 0.145472 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 1360 | 1360 | All | 0.00026 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 1075 | 1075 | AY.4 | 0.001673 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 171 | 173 | All | 0.000033 |
ORF1ab/nsp3 | 737 | N737S | aAT | aGC | 2 | 173 | All | 0 |
ORF1ab/nsp3 | 737 | N737T | aAt | aCt | 137 | 140 | All | 0.000026 |
ORF1ab/nsp3 | 737 | N737T | aAT | aCC | 3 | 140 | All | 0.000001 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 127 | 127 | B.1.617.2 | 0.000478 |
ORF1ab/nsp3 | 737 | N737T | aAt | aCt | 82 | 82 | AY.4.3 | 0.069024 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 68 | 68 | AY.3 | 0.000676 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 63 | 63 | B.1.177 | 0.00083 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 61 | 61 | All | 0.000012 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 45 | 45 | B.1.177.59 | 0.725806 |
ORF1ab/nsp3 | 737 | N737T | aAt | aCt | 43 | 43 | B.1.177.7 | 0.007089 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 41 | 41 | B.1.1.7 | 0.000037 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 31 | 31 | B.1.1.7 | 0.000028 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 26 | 26 | AY.5 | 0.000537 |
ORF1ab/nsp3 | 737 | N737Y | Aat | Tat | 22 | 24 | All | 0.000004 |
ORF1ab/nsp3 | 737 | N737Y | AaT | TaC | 2 | 24 | All | 0 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 24 | 24 | B.1.1.7 | 0.000021 |
ORF1ab/nsp3 | 737 | N737K | aaT | aaG | 21 | 23 | All | 0.000004 |
ORF1ab/nsp3 | 737 | N737K | aaT | aaA | 2 | 23 | All | 0 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 21 | 21 | B.1.1.528 | 0.100962 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 19 | 19 | AY.43 | 0.000084 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 18 | 18 | AY.25 | 0.000108 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 17 | 17 | B.1.617.2 | 0.000064 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 15 | 15 | AY.42 | 0.000603 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 14 | 14 | AY.4 | 0.000022 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 14 | 14 | B.1.177.60 | 0.003058 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 11 | 11 | AY.43 | 0.000049 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 11 | 11 | AY.46.5 | 0.002183 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 10 | 10 | N.6 | 0.070922 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 9 | 9 | B.1.367 | 0.007132 |
ORF1ab/nsp3 | 737 | N737K | aaT | aaG | 8 | 8 | AY.26 | 0.000226 |
ORF1ab/nsp3 | 737 | N737V | AAT | GTC | 3 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 737 | N737V | AAT | GTA | 2 | 7 | All | 0 |
ORF1ab/nsp3 | 737 | N737V | AAt | GTt | 2 | 7 | All | 0 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp3 | 737 | N737V | AAt | GTt | 2 | 6 | 0.111111 | |
ORF1ab/nsp3 | 737 | N737V | AAT | GTC | 2 | 6 | 0.111111 | |
ORF1ab/nsp3 | 737 | N737V | AAT | GTA | 2 | 6 | 0.111111 | |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp3 | 737 | N737H | Aat | Cat | 4 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 737 | N737H | AaT | CaC | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 5 | 5 | P.1.15 | 0.001162 |
ORF1ab/nsp3 | 737 | N737F | AAT | TTC | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 737 | N737F | AAt | TTt | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 737 | N737F | AAt | TTt | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 737 | N737F | AAT | TTC | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 4 | 4 | AY.58 | 0.00363 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 3 | 4 | B.1 | 0.000027 |
ORF1ab/nsp3 | 737 | N737S | aAT | aGC | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 4 | 4 | B.1.1.34 | 0.052632 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp3 | 737 | N737Y | Aat | Tat | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 737 | N737X | AaT | TaA | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 737 | N737E | AaT | GaA | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 737 | N737R | AAt | CGt | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 737 | N737R | aAT | aGA | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp3 | 737 | N737T | aAt | aCt | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp3 | 737 | N737K | aaT | aaG | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 3 | 3 | B.1.36.7 | 0.012 |
ORF1ab/nsp3 | 737 | N737Y | Aat | Tat | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 737 | N737L | AAT | TTA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 737 | N737X | AaT | TaA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 737 | N737Y | AaT | TaC | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 737 | N737E | AaT | GaA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 737 | N737D | AaT | GaC | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 2 | 2 | A.2.3 | 0.009479 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp3 | 737 | N737L | AAT | TTA | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 737 | N737P | AAt | CCt | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 737 | N737P | AAT | CCC | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 737 | N737G | AAt | GGt | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 737 | N737G | AAT | GGA | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp3 | 737 | N737Y | Aat | Tat | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp3 | 737 | N737Y | Aat | Tat | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 737 | N737T | aAt | aCt | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 737 | N737Y | Aat | Tat | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 737 | N737H | Aat | Cat | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 737 | N737H | AaT | CaC | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 737 | N737P | AAT | CCC | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 737 | N737P | AAt | CCt | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 737 | N737G | AAT | GGA | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 737 | N737G | AAt | GGt | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp3 | 737 | N737R | AAt | CGt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 737 | N737Y | Aat | Tat | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 2 | 2 | B.1.619 | 0.001742 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp3 | 737 | N737T | aAT | aCC | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 737 | N737I | aAt | aTt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 737 | N737C | AAt | TGt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 737 | N737del1 | Aat | -at | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 737 | N737K | aaT | aaG | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 737 | N737K | aaT | aaA | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 737 | N737T | aAt | aCt | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 737 | N737T | aAT | aCC | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 737 | N737K | aaT | aaG | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 1 | 1 | AY.31 | 0.018519 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 737 | N737Y | Aat | Tat | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 737 | N737K | aaT | aaG | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 737 | N737H | Aat | Cat | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 737 | N737Y | Aat | Tat | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 737 | N737Y | Aat | Tat | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 737 | N737T | aAt | aCt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 737 | N737T | aAt | aCt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 737 | N737K | aaT | aaG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 737 | N737C | AAt | TGt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 737 | N737T | aAT | aCC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 737 | N737T | aAt | aCt | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 737 | N737K | aaT | aaG | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 737 | N737Y | Aat | Tat | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 737 | N737K | aaT | aaG | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 737 | N737E | AaT | GaA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 737 | N737K | aaT | aaA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 737 | N737R | aAT | aGA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 737 | N737Y | Aat | Tat | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 737 | N737H | Aat | Cat | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 1 | 1 | B.1.1.395 | 0.055556 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 737 | N737K | aaT | aaG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 737 | N737I | aAt | aTt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 737 | N737T | aAt | aCt | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 737 | N737X | AaT | TaA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 737 | N737K | aaT | aaG | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 737 | N737Y | Aat | Tat | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 1 | 1 | B.1.231 | 0.032258 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 737 | N737Y | Aat | Tat | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 737 | N737K | aaT | aaG | 1 | 1 | B.1.289 | 0.00266 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 737 | N737del1 | Aat | -at | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 737 | N737S | aAT | aGC | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 737 | N737K | aaT | aaG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 737 | N737V | AAT | GTC | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 737 | N737T | aAt | aCt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 737 | N737H | Aat | Cat | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 737 | N737S | aAt | aGt | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 737 | N737del | AAT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 737 | N737T | aAt | aCt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 737 | N737D | Aat | Gat | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 737 | N737N | aaT | aaC | 1 | 1 | Q.1 | 0.000126 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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