CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 730 & Codon = Agt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3730G730SG1548SnonsynGgtAgt106410630.999064907-4909

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3730G730SGgtAgt10631064All0.000203
ORF1ab/nsp3730G730SGgtAgt690690AY.660.737968
ORF1ab/nsp3730G730SGgtAgt111111B.1.1.5190.004408
ORF1ab/nsp3730G730SGgtAgt5555B.1.177.800.105163
ORF1ab/nsp3730G730SGgtAgt5252B.1.2210.003694
ORF1ab/nsp3730G730SGgtAgt1818B.1.617.20.000068
ORF1ab/nsp3730G730SGgtAgt1515AY.40.000023
ORF1ab/nsp3730G730SGgtAgt1515AY.46.50.002976
ORF1ab/nsp3730G730SGgtAgt1313B.1.1.70.000012
ORF1ab/nsp3730G730SGgtAgt88AY.430.000035
ORF1ab/nsp3730G730SGgtAgt88B.1.20.00007
ORF1ab/nsp3730G730SGgtAgt66B.1.2430.000418
ORF1ab/nsp3730G730SGgtAgt55AY.290.000079
ORF1ab/nsp3730G730SGgtAgt55AY.440.00003
ORF1ab/nsp3730G730SGgtAgt55P.10.000079
ORF1ab/nsp3730G730SGgtAgt44AY.250.000024
ORF1ab/nsp3730G730SGgtAgt44B.10.000037
ORF1ab/nsp3730G730SGgtAgt33AY.320.001597
ORF1ab/nsp3730G730SGgtAgt33AY.370.000948
ORF1ab/nsp3730G730SGgtAgt33AY.390.000074
ORF1ab/nsp3730G730SGgtAgt33AY.50.000062
ORF1ab/nsp3730G730SGgtAgt22AY.1030.000012
ORF1ab/nsp3730G730SGgtAgt22AY.260.000057
ORF1ab/nsp3730G730SGgtAgt22AY.30.00002
ORF1ab/nsp3730G730SGgtAgt22AY.610.00021
ORF1ab/nsp3730G730SGgtAgt22B.1.1600.000062
ORF1ab/nsp3730G730SGgtAgt22B.1.6280.000705
ORF1ab/nsp3730G730SGgtAgt22B.1.6370.000146
ORF1ab/nsp3730G730SGgtAgt11AU.20.002421
ORF1ab/nsp3730G730SGgtAgt11AY.1170.000085
ORF1ab/nsp3730G730SGgtAgt11AY.1200.000037
ORF1ab/nsp3730G730SGgtAgt11AY.200.000039
ORF1ab/nsp3730G730SGgtAgt11AY.3.10.000085
ORF1ab/nsp3730G730SGgtAgt11AY.380.000499
ORF1ab/nsp3730G730SGgtAgt11AY.39.10.00004
ORF1ab/nsp3730G730SGgtAgt11AY.460.000104
ORF1ab/nsp3730G730SGgtAgt11AY.470.000031
ORF1ab/nsp3730G730SGgtAgt11AY.690.000187
ORF1ab/nsp3730G730SGgtAgt11AY.75.10.00018
ORF1ab/nsp3730G730SGgtAgt11AY.870.000833
ORF1ab/nsp3730G730SGgtAgt11AY.980.000079
ORF1ab/nsp3730G730SGgtAgt11B0.000128
ORF1ab/nsp3730G730SGgtAgt11B.1.10.000018
ORF1ab/nsp3730G730SGgtAgt11B.1.1.3110.000358
ORF1ab/nsp3730G730SGgtAgt11B.1.1.3170.000412
ORF1ab/nsp3730G730SGgtAgt11B.1.2340.000132
ORF1ab/nsp3730G730SGgtAgt11B.1.2580.000067
ORF1ab/nsp3730G730SGgtAgt11B.1.4990.00105
ORF1ab/nsp3730G730SGgtAgt11B.1.5250.000113
ORF1ab/nsp3730G730SGgtAgt11P.1.150.000232
ORF1ab/nsp3730G730SGgtAgt11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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