CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 729 | D729Y | D1547Y | nonsyn | Gat | Tat | 2815 | 2815 | 1 | 4904-4906 |
ORF1ab/nsp3 | 729 | D729D | D1547D | syn | gaT | gaC | 551 | 551 | 1 | 4904-4906 |
ORF1ab/nsp3 | 729 | D729G | D1547G | nonsyn | gAt | gGt | 349 | 349 | 1 | 4904-4906 |
ORF1ab/nsp3 | 729 | D729E | D1547E | nonsyn | gaT | gaG | 314 | 275 | 0.875796 | 4904-4906 |
ORF1ab/nsp3 | 729 | D729E | D1547E | nonsyn | gaT | gaA | 314 | 39 | 0.124204 | 4904-4906 |
ORF1ab/nsp3 | 729 | D729N | D1547N | nonsyn | Gat | Aat | 271 | 271 | 1 | 4904-4906 |
ORF1ab/nsp3 | 729 | D729del | D1547del | del | GAT | --- | 94 | 94 | 1 | 4904-4906 |
ORF1ab/nsp3 | 729 | D729A | D1547A | nonsyn | gAt | gCt | 54 | 54 | 1 | 4904-4906 |
ORF1ab/nsp3 | 729 | D729H | D1547H | nonsyn | Gat | Cat | 18 | 18 | 1 | 4904-4906 |
ORF1ab/nsp3 | 729 | D729V | D1547V | nonsyn | gAt | gTt | 9 | 8 | 0.888889 | 4904-4906 |
ORF1ab/nsp3 | 729 | D729V | D1547V | nonsyn | gAT | gTG | 9 | 1 | 0.111111 | 4904-4906 |
ORF1ab/nsp3 | 729 | D729del1 | D1547del1 | del | Gat | -at | 5 | 2 | 0.4 | 4904-4906 |
ORF1ab/nsp3 | 729 | D729del1 | D1547del1 | del | GaT | -aA | 5 | 1 | 0.2 | 4904-4906 |
ORF1ab/nsp3 | 729 | D729del1 | D1547del1 | del | gAt | g-t | 5 | 1 | 0.2 | 4904-4906 |
ORF1ab/nsp3 | 729 | D729del1 | D1547del1 | del | gaT | ga- | 5 | 1 | 0.2 | 4904-4906 |
ORF1ab/nsp3 | 729 | D729X | D1547X | nonsyn | GaT | TaA | 2 | 2 | 1 | 4904-4906 |
ORF1ab/nsp3 | 729 | D729K | D1547K | nonsyn | GaT | AaA | 2 | 2 | 1 | 4904-4906 |
ORF1ab/nsp3 | 729 | D729L | D1547L | nonsyn | GAT | CTG | 2 | 1 | 0.5 | 4904-4906 |
ORF1ab/nsp3 | 729 | D729L | D1547L | nonsyn | GAt | CTt | 2 | 1 | 0.5 | 4904-4906 |
ORF1ab/nsp3 | 729 | D729P | D1547P | nonsyn | GAt | CCt | 1 | 1 | 1 | 4904-4906 |
ORF1ab/nsp3 | 729 | D729I | D1547I | nonsyn | GAt | ATt | 1 | 1 | 1 | 4904-4906 |
ORF1ab/nsp3 | 729 | D729del2 | D1547del2 | del | GAt | --t | 1 | 1 | 1 | 4904-4906 |
ORF1ab/nsp3 | 729 | D729C | D1547C | nonsyn | GAt | TGt | 1 | 1 | 1 | 4904-4906 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2815 | 2815 | All | 0.000538 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 686 | 686 | B.1.1.7 | 0.000614 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 551 | 551 | All | 0.000105 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 429 | 429 | AY.43 | 0.001901 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 349 | 349 | All | 0.000067 |
ORF1ab/nsp3 | 729 | D729E | gaT | gaG | 275 | 314 | All | 0.000053 |
ORF1ab/nsp3 | 729 | D729E | gaT | gaA | 39 | 314 | All | 0.000007 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 300 | 300 | AY.4 | 0.000467 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 271 | 271 | All | 0.000052 |
ORF1ab/nsp3 | 729 | D729E | gaT | gaG | 245 | 248 | AY.103 | 0.001521 |
ORF1ab/nsp3 | 729 | D729E | gaT | gaA | 3 | 248 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 239 | 239 | AY.3 | 0.002377 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 143 | 143 | AY.4 | 0.000223 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 123 | 123 | B.1.617.2 | 0.000463 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 94 | 94 | All | 0.000018 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 83 | 83 | B.1.1.7 | 0.000074 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 79 | 79 | B.1.1.7 | 0.000071 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 71 | 71 | AY.103 | 0.000441 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 70 | 70 | B.1.1.7 | 0.000063 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 66 | 66 | B.1.552 | 1 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 63 | 63 | P.1 | 0.000993 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 59 | 59 | AY.44 | 0.000359 |
ORF1ab/nsp3 | 729 | D729A | gAt | gCt | 54 | 54 | All | 0.00001 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 52 | 52 | AY.4 | 0.000081 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 49 | 49 | AY.27 | 0.003171 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 48 | 48 | AY.103 | 0.000298 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 47 | 47 | B.1.160.16 | 0.04368 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 46 | 46 | AY.102 | 0.00122 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 42 | 42 | AY.69 | 0.00784 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 42 | 42 | B.1.2 | 0.00037 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 41 | 41 | B.1.617.2 | 0.000154 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 36 | 36 | AY.4 | 0.000056 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 33 | 33 | B.1 | 0.000302 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 30 | 30 | B.1.1.7 | 0.000027 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 29 | 29 | AY.25 | 0.000174 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 29 | 29 | B.1.177 | 0.000382 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 29 | 29 | B.1.478 | 0.341176 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 26 | 26 | AY.46.6 | 0.001877 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 25 | 25 | AY.26 | 0.000708 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 23 | 23 | AY.39 | 0.000568 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 23 | 23 | B.1.177.32 | 0.031039 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 21 | 21 | B.1.1 | 0.000381 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 21 | 21 | B.1.617.2 | 0.000079 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 20 | 20 | AY.100 | 0.00092 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 19 | 19 | AY.120 | 0.000706 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 19 | 19 | AY.39 | 0.00047 |
ORF1ab/nsp3 | 729 | D729H | Gat | Cat | 18 | 18 | All | 0.000003 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 18 | 18 | AY.33 | 0.001202 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 17 | 17 | B.1 | 0.000156 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 16 | 16 | B.1.351 | 0.000476 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 15 | 15 | B.1.258.11 | 0.005945 |
ORF1ab/nsp3 | 729 | D729E | gaT | gaG | 9 | 14 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 729 | D729E | gaT | gaA | 5 | 14 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 13 | 13 | AY.3.1 | 0.001108 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 13 | 13 | B.1.258 | 0.000865 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 13 | 13 | P.1 | 0.000205 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 12 | 12 | AY.44 | 0.000073 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 12 | 12 | AY.52 | 0.009772 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 12 | 12 | B.1.110.3 | 0.008621 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 12 | 12 | B.1.596 | 0.001046 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 11 | 11 | AY.62 | 0.004793 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 11 | 11 | B.1.429 | 0.000259 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 11 | 11 | P.1 | 0.000173 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 10 | 10 | AY.44 | 0.000061 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 10 | 10 | B.1.160 | 0.000312 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 10 | 10 | B.1.177.81 | 0.001893 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 10 | 10 | B.1.637 | 0.000731 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 10 | 10 | P.1.14 | 0.000478 |
ORF1ab/nsp3 | 729 | D729V | gAt | gTt | 8 | 9 | All | 0.000002 |
ORF1ab/nsp3 | 729 | D729V | gAT | gTG | 1 | 9 | All | 0 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 9 | 9 | AY.102 | 0.000239 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 9 | 9 | AY.121 | 0.001218 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 9 | 9 | AY.20 | 0.00035 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 9 | 9 | AY.47 | 0.00028 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 9 | 9 | AY.9.2 | 0.000331 |
ORF1ab/nsp3 | 729 | D729A | gAt | gCt | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 729 | D729E | gaT | gaG | 5 | 9 | B.1.177 | 0.000066 |
ORF1ab/nsp3 | 729 | D729E | gaT | gaA | 4 | 9 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 729 | D729A | gAt | gCt | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 8 | 8 | B.1.177.12 | 0.001214 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 8 | 8 | B.1.177.54 | 0.004851 |
ORF1ab/nsp3 | 729 | D729A | gAt | gCt | 8 | 8 | B.1.36.31 | 0.014011 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 7 | 7 | AY.34 | 0.000679 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 7 | 7 | AY.98.1 | 0.000339 |
ORF1ab/nsp3 | 729 | D729E | gaT | gaG | 7 | 7 | B.1.177.44 | 0.003633 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 7 | 7 | D.2 | 0.000525 |
ORF1ab/nsp3 | 729 | D729A | gAt | gCt | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 6 | 6 | AY.11 | 0.008032 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 6 | 6 | AY.111 | 0.001099 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp3 | 729 | D729E | gaT | gaA | 6 | 6 | AY.33 | 0.000401 |
ORF1ab/nsp3 | 729 | D729A | gAt | gCt | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 6 | 6 | AZ.2 | 0.004926 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 6 | 6 | B.1.160.14 | 0.012712 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 6 | 6 | B.1.232 | 0.003224 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 5 | 5 | A.2.5 | 0.002495 |
ORF1ab/nsp3 | 729 | D729del1 | Gat | -at | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 729 | D729del1 | GaT | -aA | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 729 | D729del1 | gAt | g-t | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 729 | D729del1 | gaT | ga- | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 729 | D729H | Gat | Cat | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp3 | 729 | D729E | gaT | gaA | 5 | 5 | AY.99.2 | 0.000461 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 5 | 5 | B.1.1.317 | 0.002058 |
ORF1ab/nsp3 | 729 | D729H | Gat | Cat | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 5 | 5 | B.1.177.44 | 0.002595 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 5 | 5 | B.1.356 | 0.008636 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 4 | 4 | AY.101 | 0.001962 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp3 | 729 | D729E | gaT | gaG | 4 | 4 | AY.74 | 0.000463 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp3 | 729 | D729E | gaT | gaG | 3 | 4 | B.1.177.21 | 0.000229 |
ORF1ab/nsp3 | 729 | D729E | gaT | gaA | 1 | 4 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 4 | 4 | B.1.258.17 | 0.000416 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 3 | 3 | AY.39.2 | 0.004622 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 3 | 3 | AY.8 | 0.001818 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 3 | 3 | B.1.1.302 | 0.006224 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 3 | 3 | B.1.1.369 | 0.001339 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 3 | 3 | B.1.258.3 | 0.005025 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 3 | 3 | B.1.391 | 0.003382 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp3 | 729 | D729E | gaT | gaA | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 3 | 3 | N.5 | 0.0053 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp3 | 729 | D729X | GaT | TaA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp3 | 729 | D729X | GaT | TaA | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 729 | D729K | GaT | AaA | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 729 | D729L | GAt | CTt | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 729 | D729L | GAT | CTG | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 729 | D729H | Gat | Cat | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 729 | D729E | gaT | gaA | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | AY.39.1.1 | 0.001449 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 729 | D729E | gaT | gaA | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 729 | D729H | Gat | Cat | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 729 | D729E | gaT | gaA | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 729 | D729L | GAt | CTt | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 729 | D729V | gAT | gTG | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 729 | D729V | gAt | gTt | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 729 | D729L | GAT | CTG | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | B.1.1.189 | 0.003026 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | B.1.1.269 | 0.002706 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | B.1.1.517 | 0.013605 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | B.1.160.25 | 0.022222 |
ORF1ab/nsp3 | 729 | D729A | gAt | gCt | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 2 | 2 | B.1.177.75 | 0.002081 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | B.1.189 | 0.008584 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 2 | 2 | B.1.208 | 0.08 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 729 | D729E | gaT | gaA | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 729 | D729A | gAt | gCt | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 2 | 2 | B.1.619 | 0.001742 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | B.1.619 | 0.001742 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | B.1.93 | 0.001867 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 2 | 2 | C.18 | 0.005181 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp3 | 729 | D729A | gAt | gCt | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 729 | D729E | gaT | gaA | 2 | 2 | P.7 | 0.008734 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp3 | 729 | D729I | GAt | ATt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 729 | D729del2 | GAt | --t | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 729 | D729P | GAt | CCt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 729 | D729C | GAt | TGt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 729 | D729A | gAt | gCt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 729 | D729V | gAt | gTt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | AY.15 | 0.002222 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 729 | D729H | Gat | Cat | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 729 | D729A | gAt | gCt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 729 | D729A | gAt | gCt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 729 | D729H | Gat | Cat | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 729 | D729del1 | GaT | -aA | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 729 | D729del1 | gaT | ga- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 729 | D729A | gAt | gCt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 729 | D729A | gAt | gCt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 729 | D729V | gAt | gTt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 729 | D729H | Gat | Cat | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.1.134 | 0.011364 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.1.251 | 0.007937 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.1.282 | 0.011628 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp3 | 729 | D729A | gAt | gCt | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 729 | D729P | GAt | CCt | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.1.466 | 0.008696 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 729 | D729del1 | Gat | -at | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 729 | D729C | GAt | TGt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 729 | D729I | GAt | ATt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 729 | D729K | GaT | AaA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp3 | 729 | D729K | GaT | AaA | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 729 | D729A | gAt | gCt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp3 | 729 | D729V | gAt | gTt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 729 | D729E | gaT | gaG | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp3 | 729 | D729A | gAt | gCt | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp3 | 729 | D729V | gAt | gTt | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | B.1.194 | 0.04 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.199 | 0.004132 |
ORF1ab/nsp3 | 729 | D729E | gaT | gaA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | B.1.212 | 0.016667 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 729 | D729del1 | gAt | g-t | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 729 | D729A | gAt | gCt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.381 | 0.007812 |
ORF1ab/nsp3 | 729 | D729H | Gat | Cat | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 729 | D729V | gAt | gTt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.448 | 0.002625 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 729 | D729del1 | Gat | -at | 1 | 1 | B.1.516 | 0.001957 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 729 | D729V | gAt | gTt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 729 | D729E | gaT | gaG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 729 | D729A | gAt | gCt | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.1.622 | 0.012987 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp3 | 729 | D729del2 | GAt | --t | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | C.23 | 0.005814 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 729 | D729E | gaT | gaA | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 729 | D729V | gAt | gTt | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 729 | D729Y | Gat | Tat | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 729 | D729del | GAT | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 729 | D729G | gAt | gGt | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 729 | D729D | gaT | gaC | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 729 | D729N | Gat | Aat | 1 | 1 | Y.1 | 0.012821 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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