CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 729

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3729D729YD1547YnonsynGatTat2815281514904-4906
ORF1ab/nsp3729D729DD1547DsyngaTgaC55155114904-4906
ORF1ab/nsp3729D729GD1547GnonsyngAtgGt34934914904-4906
ORF1ab/nsp3729D729ED1547EnonsyngaTgaG3142750.8757964904-4906
ORF1ab/nsp3729D729ED1547EnonsyngaTgaA314390.1242044904-4906
ORF1ab/nsp3729D729ND1547NnonsynGatAat27127114904-4906
ORF1ab/nsp3729D729delD1547deldelGAT---949414904-4906
ORF1ab/nsp3729D729AD1547AnonsyngAtgCt545414904-4906
ORF1ab/nsp3729D729HD1547HnonsynGatCat181814904-4906
ORF1ab/nsp3729D729VD1547VnonsyngAtgTt980.8888894904-4906
ORF1ab/nsp3729D729VD1547VnonsyngATgTG910.1111114904-4906
ORF1ab/nsp3729D729del1D1547del1delGat-at520.44904-4906
ORF1ab/nsp3729D729del1D1547del1delGaT-aA510.24904-4906
ORF1ab/nsp3729D729del1D1547del1delgAtg-t510.24904-4906
ORF1ab/nsp3729D729del1D1547del1delgaTga-510.24904-4906
ORF1ab/nsp3729D729XD1547XnonsynGaTTaA2214904-4906
ORF1ab/nsp3729D729KD1547KnonsynGaTAaA2214904-4906
ORF1ab/nsp3729D729LD1547LnonsynGATCTG210.54904-4906
ORF1ab/nsp3729D729LD1547LnonsynGAtCTt210.54904-4906
ORF1ab/nsp3729D729PD1547PnonsynGAtCCt1114904-4906
ORF1ab/nsp3729D729ID1547InonsynGAtATt1114904-4906
ORF1ab/nsp3729D729del2D1547del2delGAt--t1114904-4906
ORF1ab/nsp3729D729CD1547CnonsynGAtTGt1114904-4906

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3729D729YGatTat28152815All0.000538
ORF1ab/nsp3729D729YGatTat686686B.1.1.70.000614
ORF1ab/nsp3729D729DgaTgaC551551All0.000105
ORF1ab/nsp3729D729YGatTat429429AY.430.001901
ORF1ab/nsp3729D729GgAtgGt349349All0.000067
ORF1ab/nsp3729D729EgaTgaG275314All0.000053
ORF1ab/nsp3729D729EgaTgaA39314All0.000007
ORF1ab/nsp3729D729DgaTgaC300300AY.40.000467
ORF1ab/nsp3729D729NGatAat271271All0.000052
ORF1ab/nsp3729D729EgaTgaG245248AY.1030.001521
ORF1ab/nsp3729D729EgaTgaA3248AY.1030.000019
ORF1ab/nsp3729D729YGatTat239239AY.30.002377
ORF1ab/nsp3729D729YGatTat143143AY.40.000223
ORF1ab/nsp3729D729YGatTat123123B.1.617.20.000463
ORF1ab/nsp3729D729delGAT---9494All0.000018
ORF1ab/nsp3729D729GgAtgGt8383B.1.1.70.000074
ORF1ab/nsp3729D729DgaTgaC7979B.1.1.70.000071
ORF1ab/nsp3729D729YGatTat7171AY.1030.000441
ORF1ab/nsp3729D729NGatAat7070B.1.1.70.000063
ORF1ab/nsp3729D729YGatTat6666B.1.5521
ORF1ab/nsp3729D729YGatTat6363P.10.000993
ORF1ab/nsp3729D729YGatTat5959AY.440.000359
ORF1ab/nsp3729D729AgAtgCt5454All0.00001
ORF1ab/nsp3729D729GgAtgGt5252AY.40.000081
ORF1ab/nsp3729D729YGatTat4949AY.270.003171
ORF1ab/nsp3729D729DgaTgaC4848AY.1030.000298
ORF1ab/nsp3729D729YGatTat4747B.1.160.160.04368
ORF1ab/nsp3729D729YGatTat4646AY.1020.00122
ORF1ab/nsp3729D729YGatTat4242AY.690.00784
ORF1ab/nsp3729D729YGatTat4242B.1.20.00037
ORF1ab/nsp3729D729NGatAat4141B.1.617.20.000154
ORF1ab/nsp3729D729NGatAat3636AY.40.000056
ORF1ab/nsp3729D729YGatTat3333B.10.000302
ORF1ab/nsp3729D729delGAT---3030B.1.1.70.000027
ORF1ab/nsp3729D729YGatTat2929AY.250.000174
ORF1ab/nsp3729D729GgAtgGt2929B.1.1770.000382
ORF1ab/nsp3729D729YGatTat2929B.1.4780.341176
ORF1ab/nsp3729D729YGatTat2626AY.46.60.001877
ORF1ab/nsp3729D729YGatTat2525AY.260.000708
ORF1ab/nsp3729D729YGatTat2323AY.390.000568
ORF1ab/nsp3729D729YGatTat2323B.1.177.320.031039
ORF1ab/nsp3729D729YGatTat2121B.1.10.000381
ORF1ab/nsp3729D729GgAtgGt2121B.1.617.20.000079
ORF1ab/nsp3729D729YGatTat2020AY.1000.00092
ORF1ab/nsp3729D729YGatTat1919AY.1200.000706
ORF1ab/nsp3729D729GgAtgGt1919AY.390.00047
ORF1ab/nsp3729D729HGatCat1818All0.000003
ORF1ab/nsp3729D729YGatTat1818AY.330.001202
ORF1ab/nsp3729D729DgaTgaC1717B.10.000156
ORF1ab/nsp3729D729YGatTat1616B.1.3510.000476
ORF1ab/nsp3729D729DgaTgaC1515B.1.258.110.005945
ORF1ab/nsp3729D729EgaTgaG914B.1.1.70.000008
ORF1ab/nsp3729D729EgaTgaA514B.1.1.70.000004
ORF1ab/nsp3729D729YGatTat1313AY.3.10.001108
ORF1ab/nsp3729D729YGatTat1313B.1.2580.000865
ORF1ab/nsp3729D729DgaTgaC1313P.10.000205
ORF1ab/nsp3729D729GgAtgGt1212AY.440.000073
ORF1ab/nsp3729D729GgAtgGt1212AY.520.009772
ORF1ab/nsp3729D729YGatTat1212B.1.110.30.008621
ORF1ab/nsp3729D729YGatTat1212B.1.5960.001046
ORF1ab/nsp3729D729YGatTat1111AY.620.004793
ORF1ab/nsp3729D729YGatTat1111B.1.4290.000259
ORF1ab/nsp3729D729NGatAat1111P.10.000173
ORF1ab/nsp3729D729NGatAat1010AY.440.000061
ORF1ab/nsp3729D729GgAtgGt1010B.1.1600.000312
ORF1ab/nsp3729D729YGatTat1010B.1.177.810.001893
ORF1ab/nsp3729D729YGatTat1010B.1.6370.000731
ORF1ab/nsp3729D729YGatTat1010P.1.140.000478
ORF1ab/nsp3729D729VgAtgTt89All0.000002
ORF1ab/nsp3729D729VgATgTG19All0
ORF1ab/nsp3729D729GgAtgGt99AY.1020.000239
ORF1ab/nsp3729D729YGatTat99AY.1210.001218
ORF1ab/nsp3729D729YGatTat99AY.200.00035
ORF1ab/nsp3729D729YGatTat99AY.470.00028
ORF1ab/nsp3729D729YGatTat99AY.9.20.000331
ORF1ab/nsp3729D729AgAtgCt99B.1.1.70.000008
ORF1ab/nsp3729D729EgaTgaG59B.1.1770.000066
ORF1ab/nsp3729D729EgaTgaA49B.1.1770.000053
ORF1ab/nsp3729D729AgAtgCt99B.1.617.20.000034
ORF1ab/nsp3729D729NGatAat88AY.1030.00005
ORF1ab/nsp3729D729NGatAat88AY.430.000035
ORF1ab/nsp3729D729YGatTat88B.1.177.120.001214
ORF1ab/nsp3729D729YGatTat88B.1.177.540.004851
ORF1ab/nsp3729D729AgAtgCt88B.1.36.310.014011
ORF1ab/nsp3729D729YGatTat77AY.340.000679
ORF1ab/nsp3729D729YGatTat77AY.98.10.000339
ORF1ab/nsp3729D729EgaTgaG77B.1.177.440.003633
ORF1ab/nsp3729D729DgaTgaC77B.1.617.20.000026
ORF1ab/nsp3729D729YGatTat77D.20.000525
ORF1ab/nsp3729D729AgAtgCt66AY.1020.000159
ORF1ab/nsp3729D729DgaTgaC66AY.110.008032
ORF1ab/nsp3729D729YGatTat66AY.1110.001099
ORF1ab/nsp3729D729GgAtgGt66AY.200.000233
ORF1ab/nsp3729D729EgaTgaA66AY.330.000401
ORF1ab/nsp3729D729AgAtgCt66AY.40.000009
ORF1ab/nsp3729D729GgAtgGt66AY.430.000027
ORF1ab/nsp3729D729YGatTat66AZ.20.004926
ORF1ab/nsp3729D729GgAtgGt66B.10.000055
ORF1ab/nsp3729D729YGatTat66B.1.160.140.012712
ORF1ab/nsp3729D729YGatTat66B.1.1770.000079
ORF1ab/nsp3729D729NGatAat66B.1.2320.003224
ORF1ab/nsp3729D729NGatAat55A.2.50.002495
ORF1ab/nsp3729D729del1Gat-at25All0
ORF1ab/nsp3729D729del1GaT-aA15All0
ORF1ab/nsp3729D729del1gAtg-t15All0
ORF1ab/nsp3729D729del1gaTga-15All0
ORF1ab/nsp3729D729YGatTat55AY.1180.000313
ORF1ab/nsp3729D729GgAtgGt55AY.250.00003
ORF1ab/nsp3729D729delGAT---55AY.250.00003
ORF1ab/nsp3729D729HGatCat55AY.40.000008
ORF1ab/nsp3729D729YGatTat55AY.4.20.000108
ORF1ab/nsp3729D729DgaTgaC55AY.430.000022
ORF1ab/nsp3729D729YGatTat55AY.610.000524
ORF1ab/nsp3729D729NGatAat55AY.9.20.000184
ORF1ab/nsp3729D729EgaTgaA55AY.99.20.000461
ORF1ab/nsp3729D729YGatTat55B.1.1.3170.002058
ORF1ab/nsp3729D729HGatCat55B.1.1.70.000004
ORF1ab/nsp3729D729delGAT---55B.1.1770.000066
ORF1ab/nsp3729D729GgAtgGt55B.1.177.440.002595
ORF1ab/nsp3729D729NGatAat55B.1.20.000044
ORF1ab/nsp3729D729GgAtgGt55B.1.2430.000348
ORF1ab/nsp3729D729YGatTat55B.1.3560.008636
ORF1ab/nsp3729D729YGatTat55B.1.5260.000118
ORF1ab/nsp3729D729delGAT---55B.1.617.20.000019
ORF1ab/nsp3729D729GgAtgGt55P.20.000933
ORF1ab/nsp3729D729NGatAat44AY.1010.001962
ORF1ab/nsp3729D729YGatTat44AY.1130.00057
ORF1ab/nsp3729D729DgaTgaC44AY.390.000099
ORF1ab/nsp3729D729YGatTat44AY.420.000161
ORF1ab/nsp3729D729YGatTat44AY.450.000487
ORF1ab/nsp3729D729EgaTgaG44AY.740.000463
ORF1ab/nsp3729D729YGatTat44AY.9.10.000335
ORF1ab/nsp3729D729YGatTat44B.1.1.2140.000222
ORF1ab/nsp3729D729YGatTat44B.1.1600.000125
ORF1ab/nsp3729D729EgaTgaG34B.1.177.210.000229
ORF1ab/nsp3729D729EgaTgaA14B.1.177.210.000076
ORF1ab/nsp3729D729GgAtgGt44B.1.2340.000528
ORF1ab/nsp3729D729YGatTat44B.1.258.170.000416
ORF1ab/nsp3729D729GgAtgGt44B.1.5260.000094
ORF1ab/nsp3729D729NGatAat44B.1.5960.000349
ORF1ab/nsp3729D729YGatTat33AY.1190.000106
ORF1ab/nsp3729D729NGatAat33AY.250.000018
ORF1ab/nsp3729D729DgaTgaC33AY.260.000085
ORF1ab/nsp3729D729GgAtgGt33AY.290.000047
ORF1ab/nsp3729D729DgaTgaC33AY.290.000047
ORF1ab/nsp3729D729DgaTgaC33AY.30.00003
ORF1ab/nsp3729D729NGatAat33AY.39.20.004622
ORF1ab/nsp3729D729DgaTgaC33AY.4.20.000065
ORF1ab/nsp3729D729delGAT---33AY.430.000013
ORF1ab/nsp3729D729YGatTat33AY.460.000312
ORF1ab/nsp3729D729YGatTat33AY.50.000062
ORF1ab/nsp3729D729NGatAat33AY.750.000168
ORF1ab/nsp3729D729YGatTat33AY.80.001818
ORF1ab/nsp3729D729NGatAat33AY.98.10.000145
ORF1ab/nsp3729D729YGatTat33AY.99.20.000276
ORF1ab/nsp3729D729NGatAat33B.1.10.000054
ORF1ab/nsp3729D729DgaTgaC33B.1.1.2140.000166
ORF1ab/nsp3729D729YGatTat33B.1.1.2160.002671
ORF1ab/nsp3729D729YGatTat33B.1.1.3020.006224
ORF1ab/nsp3729D729DgaTgaC33B.1.1.3690.001339
ORF1ab/nsp3729D729GgAtgGt33B.1.20.000026
ORF1ab/nsp3729D729YGatTat33B.1.2210.000213
ORF1ab/nsp3729D729DgaTgaC33B.1.2580.0002
ORF1ab/nsp3729D729YGatTat33B.1.258.30.005025
ORF1ab/nsp3729D729NGatAat33B.1.3510.000089
ORF1ab/nsp3729D729YGatTat33B.1.3910.003382
ORF1ab/nsp3729D729YGatTat33B.1.4270.000151
ORF1ab/nsp3729D729EgaTgaA33C.370.000348
ORF1ab/nsp3729D729YGatTat33N.50.0053
ORF1ab/nsp3729D729GgAtgGt33P.10.000047
ORF1ab/nsp3729D729YGatTat33P.1.70.000958
ORF1ab/nsp3729D729YGatTat33Q.10.000379
ORF1ab/nsp3729D729XGaTTaA220.111111
ORF1ab/nsp3729D729delGAT---220.111111
ORF1ab/nsp3729D729YGatTat22A.23.10.001408
ORF1ab/nsp3729D729NGatAat22AD.20.000438
ORF1ab/nsp3729D729XGaTTaA22All0
ORF1ab/nsp3729D729KGaTAaA22All0
ORF1ab/nsp3729D729LGAtCTt12All0
ORF1ab/nsp3729D729LGATCTG12All0
ORF1ab/nsp3729D729YGatTat22AY.10.000791
ORF1ab/nsp3729D729GgAtgGt22AY.1030.000012
ORF1ab/nsp3729D729NGatAat22AY.1190.000071
ORF1ab/nsp3729D729GgAtgGt22AY.1200.000074
ORF1ab/nsp3729D729HGatCat22AY.270.000129
ORF1ab/nsp3729D729YGatTat22AY.290.000032
ORF1ab/nsp3729D729EgaTgaA22AY.30.00002
ORF1ab/nsp3729D729YGatTat22AY.39.1.10.001449
ORF1ab/nsp3729D729delGAT---22AY.40.000003
ORF1ab/nsp3729D729EgaTgaA22AY.40.000003
ORF1ab/nsp3729D729YGatTat22AY.4.50.000215
ORF1ab/nsp3729D729HGatCat22AY.440.000012
ORF1ab/nsp3729D729DgaTgaC22AY.440.000012
ORF1ab/nsp3729D729DgaTgaC22AY.50.000041
ORF1ab/nsp3729D729NGatAat22AY.5.40.000553
ORF1ab/nsp3729D729YGatTat22AY.60.000082
ORF1ab/nsp3729D729GgAtgGt22AY.610.00021
ORF1ab/nsp3729D729delGAT---22AY.670.000929
ORF1ab/nsp3729D729YGatTat22AY.750.000112
ORF1ab/nsp3729D729YGatTat22AY.75.10.000361
ORF1ab/nsp3729D729YGatTat22AY.790.002421
ORF1ab/nsp3729D729YGatTat22AY.930.000546
ORF1ab/nsp3729D729YGatTat22AY.980.000158
ORF1ab/nsp3729D729EgaTgaA22B.10.000018
ORF1ab/nsp3729D729delGAT---22B.10.000018
ORF1ab/nsp3729D729NGatAat22B.10.000018
ORF1ab/nsp3729D729LGAtCTt12B.1.10.000018
ORF1ab/nsp3729D729VgATgTG12B.1.10.000018
ORF1ab/nsp3729D729VgAtgTt12B.1.10.000018
ORF1ab/nsp3729D729LGATCTG12B.1.10.000018
ORF1ab/nsp3729D729YGatTat22B.1.1.1890.003026
ORF1ab/nsp3729D729YGatTat22B.1.1.2220.000408
ORF1ab/nsp3729D729YGatTat22B.1.1.2690.002706
ORF1ab/nsp3729D729YGatTat22B.1.1.280.000622
ORF1ab/nsp3729D729YGatTat22B.1.1.3060.000877
ORF1ab/nsp3729D729YGatTat22B.1.1.330.000842
ORF1ab/nsp3729D729YGatTat22B.1.1.500.001358
ORF1ab/nsp3729D729YGatTat22B.1.1.5170.013605
ORF1ab/nsp3729D729YGatTat22B.1.1.5190.000079
ORF1ab/nsp3729D729YGatTat22B.1.160.250.022222
ORF1ab/nsp3729D729AgAtgCt22B.1.1770.000026
ORF1ab/nsp3729D729YGatTat22B.1.177.600.000437
ORF1ab/nsp3729D729NGatAat22B.1.177.750.002081
ORF1ab/nsp3729D729YGatTat22B.1.1890.008584
ORF1ab/nsp3729D729DgaTgaC22B.1.20.000018
ORF1ab/nsp3729D729NGatAat22B.1.2080.08
ORF1ab/nsp3729D729DgaTgaC22B.1.2340.000264
ORF1ab/nsp3729D729EgaTgaA22B.1.2430.000139
ORF1ab/nsp3729D729YGatTat22B.1.2430.000139
ORF1ab/nsp3729D729GgAtgGt22B.1.258.170.000208
ORF1ab/nsp3729D729GgAtgGt22B.1.3510.000059
ORF1ab/nsp3729D729delGAT---22B.1.360.000292
ORF1ab/nsp3729D729GgAtgGt22B.1.360.000292
ORF1ab/nsp3729D729YGatTat22B.1.360.000292
ORF1ab/nsp3729D729NGatAat22B.1.4000.000858
ORF1ab/nsp3729D729GgAtgGt22B.1.4270.000101
ORF1ab/nsp3729D729AgAtgCt22B.1.4290.000047
ORF1ab/nsp3729D729NGatAat22B.1.4990.002101
ORF1ab/nsp3729D729delGAT---22B.1.6190.001742
ORF1ab/nsp3729D729YGatTat22B.1.6190.001742
ORF1ab/nsp3729D729YGatTat22B.1.930.001867
ORF1ab/nsp3729D729YGatTat22B.400.000729
ORF1ab/nsp3729D729NGatAat22C.180.005181
ORF1ab/nsp3729D729YGatTat22C.360.001821
ORF1ab/nsp3729D729AgAtgCt22P.10.000032
ORF1ab/nsp3729D729delGAT---22P.10.000032
ORF1ab/nsp3729D729YGatTat22P.20.000373
ORF1ab/nsp3729D729EgaTgaA22P.70.008734
ORF1ab/nsp3729D729DgaTgaC11A0.000387
ORF1ab/nsp3729D729delGAT---11A0.000387
ORF1ab/nsp3729D729delGAT---11A.2.20.001689
ORF1ab/nsp3729D729YGatTat11A.2.50.000499
ORF1ab/nsp3729D729YGatTat11A.270.001656
ORF1ab/nsp3729D729IGAtATt11All0
ORF1ab/nsp3729D729del2GAt--t11All0
ORF1ab/nsp3729D729PGAtCCt11All0
ORF1ab/nsp3729D729CGAtTGt11All0
ORF1ab/nsp3729D729YGatTat11AP.10.001502
ORF1ab/nsp3729D729YGatTat11AT.10.005128
ORF1ab/nsp3729D729delGAT---11AY.1030.000006
ORF1ab/nsp3729D729YGatTat11AY.1040.001984
ORF1ab/nsp3729D729NGatAat11AY.1060.000335
ORF1ab/nsp3729D729YGatTat11AY.1070.000466
ORF1ab/nsp3729D729DgaTgaC11AY.1110.000183
ORF1ab/nsp3729D729YGatTat11AY.1140.000231
ORF1ab/nsp3729D729YGatTat11AY.1170.000085
ORF1ab/nsp3729D729DgaTgaC11AY.1170.000085
ORF1ab/nsp3729D729GgAtgGt11AY.1170.000085
ORF1ab/nsp3729D729GgAtgGt11AY.1180.000063
ORF1ab/nsp3729D729GgAtgGt11AY.120.000316
ORF1ab/nsp3729D729AgAtgCt11AY.1200.000037
ORF1ab/nsp3729D729NGatAat11AY.1200.000037
ORF1ab/nsp3729D729DgaTgaC11AY.1210.000135
ORF1ab/nsp3729D729NGatAat11AY.140.000088
ORF1ab/nsp3729D729YGatTat11AY.140.000088
ORF1ab/nsp3729D729VgAtgTt11AY.140.000088
ORF1ab/nsp3729D729YGatTat11AY.150.002222
ORF1ab/nsp3729D729YGatTat11AY.190.00114
ORF1ab/nsp3729D729DgaTgaC11AY.200.000039
ORF1ab/nsp3729D729YGatTat11AY.230.00007
ORF1ab/nsp3729D729GgAtgGt11AY.23.10.000417
ORF1ab/nsp3729D729HGatCat11AY.250.000006
ORF1ab/nsp3729D729DgaTgaC11AY.250.000006
ORF1ab/nsp3729D729AgAtgCt11AY.260.000028
ORF1ab/nsp3729D729GgAtgGt11AY.260.000028
ORF1ab/nsp3729D729GgAtgGt11AY.270.000065
ORF1ab/nsp3729D729YGatTat11AY.29.10.000221
ORF1ab/nsp3729D729GgAtgGt11AY.30.00001
ORF1ab/nsp3729D729delGAT---11AY.30.00001
ORF1ab/nsp3729D729NGatAat11AY.30.00001
ORF1ab/nsp3729D729AgAtgCt11AY.330.000067
ORF1ab/nsp3729D729YGatTat11AY.360.000148
ORF1ab/nsp3729D729YGatTat11AY.4.2.10.000149
ORF1ab/nsp3729D729GgAtgGt11AY.4.50.000107
ORF1ab/nsp3729D729delGAT---11AY.4.50.000107
ORF1ab/nsp3729D729DgaTgaC11AY.420.00004
ORF1ab/nsp3729D729HGatCat11AY.430.000004
ORF1ab/nsp3729D729delGAT---11AY.440.000006
ORF1ab/nsp3729D729NGatAat11AY.450.000122
ORF1ab/nsp3729D729GgAtgGt11AY.46.10.001027
ORF1ab/nsp3729D729YGatTat11AY.46.20.000635
ORF1ab/nsp3729D729DgaTgaC11AY.46.60.000072
ORF1ab/nsp3729D729DgaTgaC11AY.470.000031
ORF1ab/nsp3729D729YGatTat11AY.480.000465
ORF1ab/nsp3729D729GgAtgGt11AY.50.000021
ORF1ab/nsp3729D729del1GaT-aA11AY.5.30.000337
ORF1ab/nsp3729D729NGatAat11AY.520.000814
ORF1ab/nsp3729D729YGatTat11AY.530.000288
ORF1ab/nsp3729D729NGatAat11AY.540.000095
ORF1ab/nsp3729D729GgAtgGt11AY.550.000917
ORF1ab/nsp3729D729GgAtgGt11AY.570.000656
ORF1ab/nsp3729D729YGatTat11AY.580.000907
ORF1ab/nsp3729D729GgAtgGt11AY.60.000041
ORF1ab/nsp3729D729GgAtgGt11AY.620.000436
ORF1ab/nsp3729D729YGatTat11AY.630.000387
ORF1ab/nsp3729D729YGatTat11AY.680.000274
ORF1ab/nsp3729D729GgAtgGt11AY.75.10.00018
ORF1ab/nsp3729D729DgaTgaC11AY.780.001541
ORF1ab/nsp3729D729YGatTat11AY.830.001724
ORF1ab/nsp3729D729YGatTat11AY.880.000884
ORF1ab/nsp3729D729del1gaTga-11AY.9.20.000037
ORF1ab/nsp3729D729AgAtgCt11AY.9.20.000037
ORF1ab/nsp3729D729DgaTgaC11AY.910.00073
ORF1ab/nsp3729D729delGAT---11AY.940.000443
ORF1ab/nsp3729D729AgAtgCt11AY.98.10.000048
ORF1ab/nsp3729D729delGAT---11AY.990.001049
ORF1ab/nsp3729D729YGatTat11B0.000128
ORF1ab/nsp3729D729VgAtgTt11B.10.000009
ORF1ab/nsp3729D729HGatCat11B.10.000009
ORF1ab/nsp3729D729GgAtgGt11B.1.10.000018
ORF1ab/nsp3729D729DgaTgaC11B.1.10.000018
ORF1ab/nsp3729D729delGAT---11B.1.10.000018
ORF1ab/nsp3729D729DgaTgaC11B.1.1.10.000327
ORF1ab/nsp3729D729GgAtgGt11B.1.1.1210.002427
ORF1ab/nsp3729D729YGatTat11B.1.1.1340.011364
ORF1ab/nsp3729D729delGAT---11B.1.1.1390.022727
ORF1ab/nsp3729D729delGAT---11B.1.1.1420.017544
ORF1ab/nsp3729D729YGatTat11B.1.1.1610.003534
ORF1ab/nsp3729D729YGatTat11B.1.1.2510.007937
ORF1ab/nsp3729D729YGatTat11B.1.1.2790.001121
ORF1ab/nsp3729D729DgaTgaC11B.1.1.280.000311
ORF1ab/nsp3729D729YGatTat11B.1.1.2820.011628
ORF1ab/nsp3729D729YGatTat11B.1.1.2840.000107
ORF1ab/nsp3729D729YGatTat11B.1.1.2860.002899
ORF1ab/nsp3729D729NGatAat11B.1.1.3090.005848
ORF1ab/nsp3729D729AgAtgCt11B.1.1.3110.000358
ORF1ab/nsp3729D729YGatTat11B.1.1.3160.000925
ORF1ab/nsp3729D729NGatAat11B.1.1.3180.000302
ORF1ab/nsp3729D729YGatTat11B.1.1.3260.001761
ORF1ab/nsp3729D729PGAtCCt11B.1.1.3710.010417
ORF1ab/nsp3729D729YGatTat11B.1.1.3970.002252
ORF1ab/nsp3729D729delGAT---11B.1.1.4090.002833
ORF1ab/nsp3729D729YGatTat11B.1.1.4480.002033
ORF1ab/nsp3729D729YGatTat11B.1.1.4660.008696
ORF1ab/nsp3729D729GgAtgGt11B.1.1.5190.00004
ORF1ab/nsp3729D729DgaTgaC11B.1.1.5190.00004
ORF1ab/nsp3729D729del1Gat-at11B.1.1.70.000001
ORF1ab/nsp3729D729CGAtTGt11B.1.1.70.000001
ORF1ab/nsp3729D729IGAtATt11B.1.1.70.000001
ORF1ab/nsp3729D729KGaTAaA11B.1.1.70.000001
ORF1ab/nsp3729D729GgAtgGt11B.1.1.700.000341
ORF1ab/nsp3729D729YGatTat11B.1.1470.000756
ORF1ab/nsp3729D729KGaTAaA11B.1.1490.003425
ORF1ab/nsp3729D729delGAT---11B.1.1570.002985
ORF1ab/nsp3729D729AgAtgCt11B.1.1600.000031
ORF1ab/nsp3729D729delGAT---11B.1.1600.000031
ORF1ab/nsp3729D729YGatTat11B.1.160.230.004831
ORF1ab/nsp3729D729VgAtgTt11B.1.1770.000013
ORF1ab/nsp3729D729NGatAat11B.1.1770.000013
ORF1ab/nsp3729D729DgaTgaC11B.1.1770.000013
ORF1ab/nsp3729D729GgAtgGt11B.1.177.100.000878
ORF1ab/nsp3729D729GgAtgGt11B.1.177.150.000631
ORF1ab/nsp3729D729YGatTat11B.1.177.160.000664
ORF1ab/nsp3729D729delGAT---11B.1.177.160.000664
ORF1ab/nsp3729D729delGAT---11B.1.177.170.000821
ORF1ab/nsp3729D729YGatTat11B.1.177.210.000076
ORF1ab/nsp3729D729EgaTgaG11B.1.177.310.011494
ORF1ab/nsp3729D729NGatAat11B.1.177.350.000691
ORF1ab/nsp3729D729AgAtgCt11B.1.177.460.000918
ORF1ab/nsp3729D729VgAtgTt11B.1.177.50.001242
ORF1ab/nsp3729D729delGAT---11B.1.177.500.004695
ORF1ab/nsp3729D729delGAT---11B.1.177.540.000606
ORF1ab/nsp3729D729delGAT---11B.1.177.630.002703
ORF1ab/nsp3729D729NGatAat11B.1.177.810.000189
ORF1ab/nsp3729D729delGAT---11B.1.177.830.001481
ORF1ab/nsp3729D729YGatTat11B.1.177.860.000183
ORF1ab/nsp3729D729DgaTgaC11B.1.177.860.000183
ORF1ab/nsp3729D729delGAT---11B.1.177.870.000728
ORF1ab/nsp3729D729GgAtgGt11B.1.1940.04
ORF1ab/nsp3729D729YGatTat11B.1.1990.004132
ORF1ab/nsp3729D729EgaTgaA11B.1.20.000009
ORF1ab/nsp3729D729delGAT---11B.1.20.000009
ORF1ab/nsp3729D729delGAT---11B.1.2100.002132
ORF1ab/nsp3729D729YGatTat11B.1.2100.002132
ORF1ab/nsp3729D729GgAtgGt11B.1.2120.016667
ORF1ab/nsp3729D729delGAT---11B.1.2210.000071
ORF1ab/nsp3729D729del1gAtg-t11B.1.2210.000071
ORF1ab/nsp3729D729YGatTat11B.1.2340.000132
ORF1ab/nsp3729D729YGatTat11B.1.2360.002053
ORF1ab/nsp3729D729GgAtgGt11B.1.2400.000216
ORF1ab/nsp3729D729NGatAat11B.1.2400.000216
ORF1ab/nsp3729D729YGatTat11B.1.2410.000812
ORF1ab/nsp3729D729NGatAat11B.1.2580.000067
ORF1ab/nsp3729D729YGatTat11B.1.258.110.000396
ORF1ab/nsp3729D729DgaTgaC11B.1.2650.001271
ORF1ab/nsp3729D729YGatTat11B.1.2790.000514
ORF1ab/nsp3729D729delGAT---11B.1.3190.003049
ORF1ab/nsp3729D729NGatAat11B.1.3240.001605
ORF1ab/nsp3729D729YGatTat11B.1.3290.000608
ORF1ab/nsp3729D729GgAtgGt11B.1.351.50.0006
ORF1ab/nsp3729D729DgaTgaC11B.1.36.10.00114
ORF1ab/nsp3729D729YGatTat11B.1.36.170.000494
ORF1ab/nsp3729D729delGAT---11B.1.36.290.000517
ORF1ab/nsp3729D729YGatTat11B.1.3670.000792
ORF1ab/nsp3729D729DgaTgaC11B.1.3690.000285
ORF1ab/nsp3729D729AgAtgCt11B.1.3690.000285
ORF1ab/nsp3729D729YGatTat11B.1.3710.001122
ORF1ab/nsp3729D729YGatTat11B.1.3810.007812
ORF1ab/nsp3729D729HGatCat11B.1.3960.000706
ORF1ab/nsp3729D729YGatTat11B.1.3990.001934
ORF1ab/nsp3729D729delGAT---11B.1.4090.000781
ORF1ab/nsp3729D729delGAT---11B.1.4150.014286
ORF1ab/nsp3729D729NGatAat11B.1.4270.00005
ORF1ab/nsp3729D729VgAtgTt11B.1.4290.000024
ORF1ab/nsp3729D729YGatTat11B.1.4410.009615
ORF1ab/nsp3729D729YGatTat11B.1.4480.002625
ORF1ab/nsp3729D729YGatTat11B.1.4590.004082
ORF1ab/nsp3729D729YGatTat11B.1.466.20.000391
ORF1ab/nsp3729D729GgAtgGt11B.1.466.20.000391
ORF1ab/nsp3729D729del1Gat-at11B.1.5160.001957
ORF1ab/nsp3729D729NGatAat11B.1.5440.006024
ORF1ab/nsp3729D729DgaTgaC11B.1.5640.000426
ORF1ab/nsp3729D729YGatTat11B.1.5650.00081
ORF1ab/nsp3729D729GgAtgGt11B.1.5770.000687
ORF1ab/nsp3729D729VgAtgTt11B.1.5950.000261
ORF1ab/nsp3729D729GgAtgGt11B.1.5950.000261
ORF1ab/nsp3729D729YGatTat11B.1.5950.000261
ORF1ab/nsp3729D729YGatTat11B.1.617.10.000129
ORF1ab/nsp3729D729delGAT---11B.1.617.10.000129
ORF1ab/nsp3729D729EgaTgaG11B.1.617.20.000004
ORF1ab/nsp3729D729AgAtgCt11B.1.6190.000871
ORF1ab/nsp3729D729NGatAat11B.1.619.10.000641
ORF1ab/nsp3729D729YGatTat11B.1.6210.000089
ORF1ab/nsp3729D729NGatAat11B.1.621.10.000506
ORF1ab/nsp3729D729YGatTat11B.1.6220.012987
ORF1ab/nsp3729D729GgAtgGt11B.1.6280.000352
ORF1ab/nsp3729D729GgAtgGt11B.1.930.000934
ORF1ab/nsp3729D729delGAT---11B.150.017544
ORF1ab/nsp3729D729YGatTat11B.3.10.001658
ORF1ab/nsp3729D729del2GAt--t11B.340.013699
ORF1ab/nsp3729D729DgaTgaC11B.400.000364
ORF1ab/nsp3729D729YGatTat11B.610.005747
ORF1ab/nsp3729D729DgaTgaC11C.230.005814
ORF1ab/nsp3729D729YGatTat11C.36.30.000567
ORF1ab/nsp3729D729DgaTgaC11C.36.30.000567
ORF1ab/nsp3729D729EgaTgaA11C.36.30.000567
ORF1ab/nsp3729D729GgAtgGt11C.370.000116
ORF1ab/nsp3729D729YGatTat11C.370.000116
ORF1ab/nsp3729D729DgaTgaC11D.20.000075
ORF1ab/nsp3729D729VgAtgTt11P.1.10.000318
ORF1ab/nsp3729D729delGAT---11P.1.10.000318
ORF1ab/nsp3729D729DgaTgaC11P.1.170.000162
ORF1ab/nsp3729D729YGatTat11P.1.170.000162
ORF1ab/nsp3729D729YGatTat11P.1.20.001156
ORF1ab/nsp3729D729GgAtgGt11P.1.70.000319
ORF1ab/nsp3729D729NGatAat11P.1.90.004808
ORF1ab/nsp3729D729DgaTgaC11Q.10.000126
ORF1ab/nsp3729D729delGAT---11Q.20.000613
ORF1ab/nsp3729D729NGatAat11Q.80.000165
ORF1ab/nsp3729D729GgAtgGt11R.10.00009
ORF1ab/nsp3729D729DgaTgaC11R.10.00009
ORF1ab/nsp3729D729NGatAat11Y.10.012821