CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 725

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3725T725IT1543InonsynaCaaTa774077380.9997424892-4894
ORF1ab/nsp3725T725IT1543InonsynaCAaTT774020.0002583984892-4894
ORF1ab/nsp3725T725AT1543AnonsynAcaGca2792760.9892474892-4894
ORF1ab/nsp3725T725AT1543AnonsynAcAGcT27920.007168464892-4894
ORF1ab/nsp3725T725AT1543AnonsynAcAGcG27910.003584234892-4894
ORF1ab/nsp3725T725TT1543TsynacAacG2211690.7647064892-4894
ORF1ab/nsp3725T725TT1543TsynacAacT221330.1493214892-4894
ORF1ab/nsp3725T725TT1543TsynacAacC221190.08597294892-4894
ORF1ab/nsp3725T725KT1543KnonsynaCaaAa19819814892-4894
ORF1ab/nsp3725T725delT1543deldelACA---949414892-4894
ORF1ab/nsp3725T725ST1543SnonsynAcaTca464614892-4894
ORF1ab/nsp3725T725del1T1543del1delAca-ca7714892-4894
ORF1ab/nsp3725T725del2T1543del2delaCAa--750.7142864892-4894
ORF1ab/nsp3725T725del2T1543del2delACa--a720.2857144892-4894
ORF1ab/nsp3725T725PT1543PnonsynAcaCca530.64892-4894
ORF1ab/nsp3725T725PT1543PnonsynAcACcT520.44892-4894
ORF1ab/nsp3725T725NT1543NnonsynaCAaAT2214892-4894
ORF1ab/nsp3725T725HT1543HnonsynACACAT2214892-4894
ORF1ab/nsp3725T725VT1543VnonsynACAGTT2214892-4894
ORF1ab/nsp3725T725DT1543DnonsynACAGAT2214892-4894
ORF1ab/nsp3725T725LT1543LnonsynACACTT2214892-4894

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3725T725IaCaaTa77387740All0.00148
ORF1ab/nsp3725T725IaCAaTT27740All0
ORF1ab/nsp3725T725IaCaaTa25332533B.1.1.70.002268
ORF1ab/nsp3725T725IaCaaTa821821AY.40.001278
ORF1ab/nsp3725T725IaCaaTa610610B.1.258.160.998363
ORF1ab/nsp3725T725IaCaaTa446446B.1.617.20.001679
ORF1ab/nsp3725T725IaCaaTa418418AY.30.004158
ORF1ab/nsp3725T725AAcaGca276279All0.000053
ORF1ab/nsp3725T725AAcAGcT2279All0
ORF1ab/nsp3725T725AAcAGcG1279All0
ORF1ab/nsp3725T725IaCaaTa271271AY.250.00163
ORF1ab/nsp3725T725TacAacG169221All0.000032
ORF1ab/nsp3725T725TacAacT33221All0.000006
ORF1ab/nsp3725T725TacAacC19221All0.000004
ORF1ab/nsp3725T725KaCaaAa198198All0.000038
ORF1ab/nsp3725T725IaCaaTa131131B.1.2580.008718
ORF1ab/nsp3725T725AAcaGca116116AY.940.05135
ORF1ab/nsp3725T725IaCaaTa112112AY.440.000682
ORF1ab/nsp3725T725IaCaaTa101101B.1.20.000889
ORF1ab/nsp3725T725IaCaaTa100100AY.430.000443
ORF1ab/nsp3725T725delACA---9494All0.000018
ORF1ab/nsp3725T725KaCaaAa9494B.1.6031
ORF1ab/nsp3725T725IaCaaTa9090AY.1030.000559
ORF1ab/nsp3725T725IaCaaTa8383B.1.4290.001953
ORF1ab/nsp3725T725IaCaaTa7575B.10.000687
ORF1ab/nsp3725T725IaCaaTa7575B.1.10.001361
ORF1ab/nsp3725T725IaCaaTa7474B.1.1600.002308
ORF1ab/nsp3725T725IaCaaTa7171AY.1200.00264
ORF1ab/nsp3725T725IaCaaTa6464B.1.1.280.019919
ORF1ab/nsp3725T725IaCaaTa6060A.2.50.02994
ORF1ab/nsp3725T725IaCaaTa6060B.1.1770.00079
ORF1ab/nsp3725T725TacAacG4358B.1.1.70.000038
ORF1ab/nsp3725T725TacAacT1558B.1.1.70.000013
ORF1ab/nsp3725T725IaCaaTa5252AY.160.019742
ORF1ab/nsp3725T725IaCaaTa5151AY.360.007559
ORF1ab/nsp3725T725IaCaaTa4949AY.1210.006631
ORF1ab/nsp3725T725IaCaaTa4747AY.330.003139
ORF1ab/nsp3725T725IaCaaTa4747B.1.2400.010131
ORF1ab/nsp3725T725SAcaTca4646All0.000009
ORF1ab/nsp3725T725KaCaaAa4444B.1.5620.814815
ORF1ab/nsp3725T725IaCaaTa4242B.1.36.340.893617
ORF1ab/nsp3725T725IaCaaTa4141P.10.000646
ORF1ab/nsp3725T725IaCaaTa3939AY.70.007644
ORF1ab/nsp3725T725SAcaTca3838B.1.1.70.000034
ORF1ab/nsp3725T725IaCaaTa3737AY.390.000914
ORF1ab/nsp3725T725IaCaaTa3535AY.4.20.000759
ORF1ab/nsp3725T725IaCaaTa3535B.6.60.031111
ORF1ab/nsp3725T725IaCaaTa3434B.1.3510.001011
ORF1ab/nsp3725T725IaCaaTa3333B.1.177.370.891892
ORF1ab/nsp3725T725delACA---3232B.1.1.70.000029
ORF1ab/nsp3725T725IaCaaTa3030AY.1020.000795
ORF1ab/nsp3725T725AAcaGca3030AY.90.002028
ORF1ab/nsp3725T725IaCaaTa3030B.1.5260.000705
ORF1ab/nsp3725T725IaCaaTa2727AY.590.014301
ORF1ab/nsp3725T725AAcaGca2727B.1.1.70.000024
ORF1ab/nsp3725T725IaCaaTa2525B.1.1.2140.001386
ORF1ab/nsp3725T725IaCaaTa2424B.1.1.330.010101
ORF1ab/nsp3725T725IaCaaTa2323AY.1170.001944
ORF1ab/nsp3725T725IaCaaTa2121B.1.1.2070.024823
ORF1ab/nsp3725T725IaCaaTa2020AY.980.00158
ORF1ab/nsp3725T725IaCaaTa2020B.1.177.540.012129
ORF1ab/nsp3725T725IaCaaTa1919B.1.1.3170.007822
ORF1ab/nsp3725T725IaCaaTa1818AY.140.001584
ORF1ab/nsp3725T725KaCaaAa1818B.1.1.70.000016
ORF1ab/nsp3725T725IaCaaTa1717AY.260.000481
ORF1ab/nsp3725T725IaCaaTa1717AY.4.50.001827
ORF1ab/nsp3725T725IaCaaTa1717AY.46.50.003373
ORF1ab/nsp3725T725IaCaaTa1616B0.002045
ORF1ab/nsp3725T725IaCaaTa1616B.1.1.2840.001718
ORF1ab/nsp3725T725IaCaaTa1616B.1.177.420.014311
ORF1ab/nsp3725T725TacAacG1616B.1.4290.000376
ORF1ab/nsp3725T725IaCaaTa1515AY.50.00031
ORF1ab/nsp3725T725IaCaaTa1414AY.610.001467
ORF1ab/nsp3725T725IaCaaTa1414B.1.1.5190.000556
ORF1ab/nsp3725T725KaCaaAa1313AY.46.40.002139
ORF1ab/nsp3725T725TacAacG1313P.10.000205
ORF1ab/nsp3725T725IaCaaTa1212AY.1190.000424
ORF1ab/nsp3725T725AAcaGca1212AY.39.10.000475
ORF1ab/nsp3725T725IaCaaTa1212AY.9.10.001005
ORF1ab/nsp3725T725AAcaGca1112B.1.10.0002
ORF1ab/nsp3725T725AAcAGcG112B.1.10.000018
ORF1ab/nsp3725T725TacAacC812B.1.20.00007
ORF1ab/nsp3725T725TacAacG212B.1.20.000018
ORF1ab/nsp3725T725TacAacT212B.1.20.000018
ORF1ab/nsp3725T725AAcaGca1111B.10.000101
ORF1ab/nsp3725T725IaCaaTa1010AY.1110.001832
ORF1ab/nsp3725T725IaCaaTa1010AY.200.000389
ORF1ab/nsp3725T725IaCaaTa1010AY.910.007305
ORF1ab/nsp3725T725TacAacG1010B.1.1.1760.004394
ORF1ab/nsp3725T725TacAacG1010B.1.1.5190.000397
ORF1ab/nsp3725T725IaCaaTa1010B.1.3750.008197
ORF1ab/nsp3725T725IaCaaTa1010B.1.617.10.00129
ORF1ab/nsp3725T725IaCaaTa1010B.1.6370.000731
ORF1ab/nsp3725T725IaCaaTa99AY.240.003879
ORF1ab/nsp3725T725IaCaaTa99B.1.1.2220.001836
ORF1ab/nsp3725T725AAcaGca99B.1.1600.000281
ORF1ab/nsp3725T725IaCaaTa99B.1.258.170.000936
ORF1ab/nsp3725T725IaCaaTa99B.1.4270.000454
ORF1ab/nsp3725T725TacAacG88AY.1190.000282
ORF1ab/nsp3725T725IaCaaTa88AY.290.000126
ORF1ab/nsp3725T725IaCaaTa88AY.46.60.000578
ORF1ab/nsp3725T725IaCaaTa88AY.510.007273
ORF1ab/nsp3725T725IaCaaTa88AY.9.20.000294
ORF1ab/nsp3725T725KaCaaAa88B.10.000073
ORF1ab/nsp3725T725IaCaaTa88B.1.177.80.00602
ORF1ab/nsp3725T725IaCaaTa88B.1.2320.004299
ORF1ab/nsp3725T725IaCaaTa88B.1.2430.000557
ORF1ab/nsp3725T725IaCaaTa88B.1.3690.002282
ORF1ab/nsp3725T725IaCaaTa88B.1.4660.186047
ORF1ab/nsp3725T725del1Aca-ca77All0.000001
ORF1ab/nsp3725T725del2aCAa--57All0.000001
ORF1ab/nsp3725T725del2ACa--a27All0
ORF1ab/nsp3725T725IaCaaTa77AY.1000.000322
ORF1ab/nsp3725T725IaCaaTa77AY.420.000282
ORF1ab/nsp3725T725TacAacG77AY.430.000031
ORF1ab/nsp3725T725IaCaaTa77AY.750.000392
ORF1ab/nsp3725T725IaCaaTa77AY.790.008475
ORF1ab/nsp3725T725TacAacC57B.1.10.000091
ORF1ab/nsp3725T725TacAacG27B.1.10.000036
ORF1ab/nsp3725T725IaCaaTa77B.1.1.1860.024055
ORF1ab/nsp3725T725IaCaaTa77B.1.177.210.000535
ORF1ab/nsp3725T725IaCaaTa77B.1.5170.002989
ORF1ab/nsp3725T725IaCaaTa77B.1.5230.017157
ORF1ab/nsp3725T725AAcaGca77B.1.617.20.000026
ORF1ab/nsp3725T725IaCaaTa77P.1.170.001132
ORF1ab/nsp3725T725TacAacG46AY.30.00004
ORF1ab/nsp3725T725TacAacC16AY.30.00001
ORF1ab/nsp3725T725TacAacT16AY.30.00001
ORF1ab/nsp3725T725TacAacG36AY.40.000005
ORF1ab/nsp3725T725TacAacT26AY.40.000003
ORF1ab/nsp3725T725TacAacC16AY.40.000002
ORF1ab/nsp3725T725IaCaaTa66AY.60.000247
ORF1ab/nsp3725T725IaCaaTa66AY.99.20.000553
ORF1ab/nsp3725T725TacAacG66B.1.1770.000079
ORF1ab/nsp3725T725AAcaGca66B.1.20.000053
ORF1ab/nsp3725T725IaCaaTa66B.1.2340.000792
ORF1ab/nsp3725T725IaCaaTa66B.1.2360.01232
ORF1ab/nsp3725T725IaCaaTa66B.1.466.20.002347
ORF1ab/nsp3725T725IaCaaTa66B.1.5510.007742
ORF1ab/nsp3725T725IaCaaTa66C.370.000696
ORF1ab/nsp3725T725PAcaCca35All0.000001
ORF1ab/nsp3725T725PAcACcT25All0
ORF1ab/nsp3725T725IaCaaTa55AY.1060.001674
ORF1ab/nsp3725T725IaCaaTa55AY.120.00158
ORF1ab/nsp3725T725AAcaGca55AY.40.000008
ORF1ab/nsp3725T725IaCaaTa55AY.90.000338
ORF1ab/nsp3725T725IaCaaTa55B.1.1.630.001929
ORF1ab/nsp3725T725delACA---55B.1.1770.000066
ORF1ab/nsp3725T725IaCaaTa55B.1.2210.000355
ORF1ab/nsp3725T725IaCaaTa55B.1.36.240.030864
ORF1ab/nsp3725T725IaCaaTa55B.1.6090.002397
ORF1ab/nsp3725T725TacAacG35B.1.617.20.000011
ORF1ab/nsp3725T725TacAacT25B.1.617.20.000008
ORF1ab/nsp3725T725IaCaaTa55D.20.000375
ORF1ab/nsp3725T725IaCaaTa240.111111
ORF1ab/nsp3725T725TacAacG240.111111
ORF1ab/nsp3725T725IaCAaTT240.111111
ORF1ab/nsp3725T725TacAacT240.111111
ORF1ab/nsp3725T725IaCaaTa44AY.1010.001962
ORF1ab/nsp3725T725TacAacT24AY.290.000032
ORF1ab/nsp3725T725TacAacG24AY.290.000032
ORF1ab/nsp3725T725IaCaaTa44AY.29.10.000882
ORF1ab/nsp3725T725TacAacG24AY.440.000012
ORF1ab/nsp3725T725TacAacC14AY.440.000006
ORF1ab/nsp3725T725TacAacT14AY.440.000006
ORF1ab/nsp3725T725IaCaaTa44AY.470.000124
ORF1ab/nsp3725T725IaCaaTa44AY.98.10.000194
ORF1ab/nsp3725T725TacAacG44B.10.000037
ORF1ab/nsp3725T725KaCaaAa44B.1.10.000073
ORF1ab/nsp3725T725AAcaGca44B.1.1.10.001307
ORF1ab/nsp3725T725AAcaGca44B.1.1.2880.007663
ORF1ab/nsp3725T725KaCaaAa44B.1.1.5190.000159
ORF1ab/nsp3725T725del1Aca-ca44B.1.1.70.000004
ORF1ab/nsp3725T725IaCaaTa44B.1.1.700.001364
ORF1ab/nsp3725T725IaCaaTa44B.1.1080.023256
ORF1ab/nsp3725T725IaCaaTa44B.1.177.40.000844
ORF1ab/nsp3725T725IaCaaTa44B.1.360.000584
ORF1ab/nsp3725T725IaCaaTa44B.1.5960.000349
ORF1ab/nsp3725T725delACA---44B.1.617.20.000015
ORF1ab/nsp3725T725IaCaaTa44R.10.00036
ORF1ab/nsp3725T725IaCaaTa33A.270.004967
ORF1ab/nsp3725T725IaCaaTa33AT.10.015385
ORF1ab/nsp3725T725TacAacC23AY.1030.000012
ORF1ab/nsp3725T725TacAacG13AY.1030.000006
ORF1ab/nsp3725T725IaCaaTa33AY.1100.000338
ORF1ab/nsp3725T725IaCaaTa33AY.1130.000427
ORF1ab/nsp3725T725IaCaaTa33AY.1160.00086
ORF1ab/nsp3725T725IaCaaTa33AY.1180.000188
ORF1ab/nsp3725T725IaCaaTa33AY.130.000483
ORF1ab/nsp3725T725TacAacG33AY.200.000117
ORF1ab/nsp3725T725IaCaaTa33AY.230.000209
ORF1ab/nsp3725T725del2aCAa--33AY.250.000018
ORF1ab/nsp3725T725IaCaaTa33AY.270.000194
ORF1ab/nsp3725T725AAcaGca33AY.430.000013
ORF1ab/nsp3725T725KaCaaAa33AY.440.000018
ORF1ab/nsp3725T725IaCaaTa33AY.5.40.00083
ORF1ab/nsp3725T725AAcaGca33AY.510.002727
ORF1ab/nsp3725T725IaCaaTa33AY.550.002752
ORF1ab/nsp3725T725IaCaaTa33AY.710.001425
ORF1ab/nsp3725T725IaCaaTa33AY.75.10.000541
ORF1ab/nsp3725T725IaCaaTa33AY.920.000862
ORF1ab/nsp3725T725TacAacG33B.1.1.280.000934
ORF1ab/nsp3725T725IaCaaTa33B.1.177.560.002003
ORF1ab/nsp3725T725IaCaaTa33B.1.177.860.00055
ORF1ab/nsp3725T725IaCaaTa33B.1.36.380.004926
ORF1ab/nsp3725T725IaCaaTa33B.1.3970.014563
ORF1ab/nsp3725T725IaCaaTa33B.1.4260.003027
ORF1ab/nsp3725T725IaCaaTa33B.1.5250.000339
ORF1ab/nsp3725T725IaCaaTa33B.1.6100.010638
ORF1ab/nsp3725T725IaCaaTa33B.1.6210.000266
ORF1ab/nsp3725T725IaCaaTa33P.1.140.000143
ORF1ab/nsp3725T725IaCaaTa33P.20.00056
ORF1ab/nsp3725T725HACACAT220.111111
ORF1ab/nsp3725T725NaCAaAT220.111111
ORF1ab/nsp3725T725PAcACcT220.111111
ORF1ab/nsp3725T725LACACTT220.111111
ORF1ab/nsp3725T725DACAGAT220.111111
ORF1ab/nsp3725T725VACAGTT220.111111
ORF1ab/nsp3725T725AAcAGcT220.111111
ORF1ab/nsp3725T725AAcaGca22A.30.004193
ORF1ab/nsp3725T725DACAGAT22All0
ORF1ab/nsp3725T725NaCAaAT22All0
ORF1ab/nsp3725T725VACAGTT22All0
ORF1ab/nsp3725T725LACACTT22All0
ORF1ab/nsp3725T725HACACAT22All0
ORF1ab/nsp3725T725IaCaaTa22AU.20.004843
ORF1ab/nsp3725T725IaCaaTa22AY.1090.001479
ORF1ab/nsp3725T725AAcaGca22AY.1190.000071
ORF1ab/nsp3725T725IaCaaTa22AY.120.10.000642
ORF1ab/nsp3725T725IaCaaTa22AY.210.003795
ORF1ab/nsp3725T725SAcaTca22AY.250.000012
ORF1ab/nsp3725T725delACA---22AY.250.000012
ORF1ab/nsp3725T725delACA---22AY.30.00002
ORF1ab/nsp3725T725IaCaaTa22AY.3.10.000171
ORF1ab/nsp3725T725IaCaaTa22AY.350.000466
ORF1ab/nsp3725T725IaCaaTa22AY.39.10.000079
ORF1ab/nsp3725T725delACA---22AY.40.000003
ORF1ab/nsp3725T725delACA---22AY.430.000009
ORF1ab/nsp3725T725delACA---22AY.440.000012
ORF1ab/nsp3725T725AAcaGca22AY.440.000012
ORF1ab/nsp3725T725IaCaaTa22AY.450.000243
ORF1ab/nsp3725T725IaCaaTa22AY.460.000208
ORF1ab/nsp3725T725TacAacG22AY.50.000041
ORF1ab/nsp3725T725IaCaaTa22AY.540.000191
ORF1ab/nsp3725T725IaCaaTa22AY.580.001815
ORF1ab/nsp3725T725delACA---22AY.670.000929
ORF1ab/nsp3725T725IaCaaTa22AY.700.000417
ORF1ab/nsp3725T725IaCaaTa22AY.740.000231
ORF1ab/nsp3725T725IaCaaTa22AY.99.10.003106
ORF1ab/nsp3725T725delACA---22B.10.000018
ORF1ab/nsp3725T725IaCaaTa22B.1.1.10.000653
ORF1ab/nsp3725T725TacAacG22B.1.1.2030.033898
ORF1ab/nsp3725T725IaCaaTa22B.1.1.3000.021505
ORF1ab/nsp3725T725SAcaTca22B.1.1.3060.000877
ORF1ab/nsp3725T725IaCaaTa22B.1.1.3780.014599
ORF1ab/nsp3725T725IaCaaTa22B.1.1.4320.002532
ORF1ab/nsp3725T725IaCaaTa22B.1.1.4480.004065
ORF1ab/nsp3725T725IaCaaTa22B.1.1.4640.002946
ORF1ab/nsp3725T725del2ACa--a22B.1.1.70.000002
ORF1ab/nsp3725T725IaCaaTa22B.1.1280.001271
ORF1ab/nsp3725T725IaCaaTa22B.1.160.280.005848
ORF1ab/nsp3725T725KaCaaAa22B.1.20.000018
ORF1ab/nsp3725T725TacAacG22B.1.2210.000142
ORF1ab/nsp3725T725TacAacT22B.1.3060.011429
ORF1ab/nsp3725T725delACA---22B.1.360.000292
ORF1ab/nsp3725T725TacAacG22B.1.360.000292
ORF1ab/nsp3725T725IaCaaTa22B.1.36.290.001035
ORF1ab/nsp3725T725IaCaaTa22B.1.3980.005952
ORF1ab/nsp3725T725IaCaaTa22B.1.4090.001563
ORF1ab/nsp3725T725AAcaGca22B.1.4290.000047
ORF1ab/nsp3725T725IaCaaTa22B.1.6180.008065
ORF1ab/nsp3725T725delACA---22B.1.6190.001742
ORF1ab/nsp3725T725TacAacG22B.1.6370.000146
ORF1ab/nsp3725T725AAcaGca22B.400.000729
ORF1ab/nsp3725T725AAcaGca22B.6.60.001778
ORF1ab/nsp3725T725IaCaaTa22C.330.117647
ORF1ab/nsp3725T725IaCaaTa22N.30.011628
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