CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 725 | T725I | T1543I | nonsyn | aCa | aTa | 7740 | 7738 | 0.999742 | 4892-4894 |
ORF1ab/nsp3 | 725 | T725I | T1543I | nonsyn | aCA | aTT | 7740 | 2 | 0.000258398 | 4892-4894 |
ORF1ab/nsp3 | 725 | T725A | T1543A | nonsyn | Aca | Gca | 279 | 276 | 0.989247 | 4892-4894 |
ORF1ab/nsp3 | 725 | T725A | T1543A | nonsyn | AcA | GcT | 279 | 2 | 0.00716846 | 4892-4894 |
ORF1ab/nsp3 | 725 | T725A | T1543A | nonsyn | AcA | GcG | 279 | 1 | 0.00358423 | 4892-4894 |
ORF1ab/nsp3 | 725 | T725T | T1543T | syn | acA | acG | 221 | 169 | 0.764706 | 4892-4894 |
ORF1ab/nsp3 | 725 | T725T | T1543T | syn | acA | acT | 221 | 33 | 0.149321 | 4892-4894 |
ORF1ab/nsp3 | 725 | T725T | T1543T | syn | acA | acC | 221 | 19 | 0.0859729 | 4892-4894 |
ORF1ab/nsp3 | 725 | T725K | T1543K | nonsyn | aCa | aAa | 198 | 198 | 1 | 4892-4894 |
ORF1ab/nsp3 | 725 | T725del | T1543del | del | ACA | --- | 94 | 94 | 1 | 4892-4894 |
ORF1ab/nsp3 | 725 | T725S | T1543S | nonsyn | Aca | Tca | 46 | 46 | 1 | 4892-4894 |
ORF1ab/nsp3 | 725 | T725del1 | T1543del1 | del | Aca | -ca | 7 | 7 | 1 | 4892-4894 |
ORF1ab/nsp3 | 725 | T725del2 | T1543del2 | del | aCA | a-- | 7 | 5 | 0.714286 | 4892-4894 |
ORF1ab/nsp3 | 725 | T725del2 | T1543del2 | del | ACa | --a | 7 | 2 | 0.285714 | 4892-4894 |
ORF1ab/nsp3 | 725 | T725P | T1543P | nonsyn | Aca | Cca | 5 | 3 | 0.6 | 4892-4894 |
ORF1ab/nsp3 | 725 | T725P | T1543P | nonsyn | AcA | CcT | 5 | 2 | 0.4 | 4892-4894 |
ORF1ab/nsp3 | 725 | T725N | T1543N | nonsyn | aCA | aAT | 2 | 2 | 1 | 4892-4894 |
ORF1ab/nsp3 | 725 | T725H | T1543H | nonsyn | ACA | CAT | 2 | 2 | 1 | 4892-4894 |
ORF1ab/nsp3 | 725 | T725V | T1543V | nonsyn | ACA | GTT | 2 | 2 | 1 | 4892-4894 |
ORF1ab/nsp3 | 725 | T725D | T1543D | nonsyn | ACA | GAT | 2 | 2 | 1 | 4892-4894 |
ORF1ab/nsp3 | 725 | T725L | T1543L | nonsyn | ACA | CTT | 2 | 2 | 1 | 4892-4894 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 7738 | 7740 | All | 0.00148 |
ORF1ab/nsp3 | 725 | T725I | aCA | aTT | 2 | 7740 | All | 0 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2533 | 2533 | B.1.1.7 | 0.002268 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 821 | 821 | AY.4 | 0.001278 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 610 | 610 | B.1.258.16 | 0.998363 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 446 | 446 | B.1.617.2 | 0.001679 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 418 | 418 | AY.3 | 0.004158 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 276 | 279 | All | 0.000053 |
ORF1ab/nsp3 | 725 | T725A | AcA | GcT | 2 | 279 | All | 0 |
ORF1ab/nsp3 | 725 | T725A | AcA | GcG | 1 | 279 | All | 0 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 271 | 271 | AY.25 | 0.00163 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 169 | 221 | All | 0.000032 |
ORF1ab/nsp3 | 725 | T725T | acA | acT | 33 | 221 | All | 0.000006 |
ORF1ab/nsp3 | 725 | T725T | acA | acC | 19 | 221 | All | 0.000004 |
ORF1ab/nsp3 | 725 | T725K | aCa | aAa | 198 | 198 | All | 0.000038 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 131 | 131 | B.1.258 | 0.008718 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 116 | 116 | AY.94 | 0.05135 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 112 | 112 | AY.44 | 0.000682 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 101 | 101 | B.1.2 | 0.000889 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 100 | 100 | AY.43 | 0.000443 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 94 | 94 | All | 0.000018 |
ORF1ab/nsp3 | 725 | T725K | aCa | aAa | 94 | 94 | B.1.603 | 1 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 90 | 90 | AY.103 | 0.000559 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 83 | 83 | B.1.429 | 0.001953 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 75 | 75 | B.1 | 0.000687 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 75 | 75 | B.1.1 | 0.001361 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 74 | 74 | B.1.160 | 0.002308 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 71 | 71 | AY.120 | 0.00264 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 64 | 64 | B.1.1.28 | 0.019919 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 60 | 60 | A.2.5 | 0.02994 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 60 | 60 | B.1.177 | 0.00079 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 43 | 58 | B.1.1.7 | 0.000038 |
ORF1ab/nsp3 | 725 | T725T | acA | acT | 15 | 58 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 52 | 52 | AY.16 | 0.019742 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 51 | 51 | AY.36 | 0.007559 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 49 | 49 | AY.121 | 0.006631 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 47 | 47 | AY.33 | 0.003139 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 47 | 47 | B.1.240 | 0.010131 |
ORF1ab/nsp3 | 725 | T725S | Aca | Tca | 46 | 46 | All | 0.000009 |
ORF1ab/nsp3 | 725 | T725K | aCa | aAa | 44 | 44 | B.1.562 | 0.814815 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 42 | 42 | B.1.36.34 | 0.893617 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 41 | 41 | P.1 | 0.000646 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 39 | 39 | AY.7 | 0.007644 |
ORF1ab/nsp3 | 725 | T725S | Aca | Tca | 38 | 38 | B.1.1.7 | 0.000034 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 37 | 37 | AY.39 | 0.000914 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 35 | 35 | AY.4.2 | 0.000759 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 35 | 35 | B.6.6 | 0.031111 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 34 | 34 | B.1.351 | 0.001011 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 33 | 33 | B.1.177.37 | 0.891892 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 32 | 32 | B.1.1.7 | 0.000029 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 30 | 30 | AY.102 | 0.000795 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 30 | 30 | AY.9 | 0.002028 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 30 | 30 | B.1.526 | 0.000705 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 27 | 27 | AY.59 | 0.014301 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 27 | 27 | B.1.1.7 | 0.000024 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 25 | 25 | B.1.1.214 | 0.001386 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 24 | 24 | B.1.1.33 | 0.010101 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 23 | 23 | AY.117 | 0.001944 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 21 | 21 | B.1.1.207 | 0.024823 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 20 | 20 | AY.98 | 0.00158 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 20 | 20 | B.1.177.54 | 0.012129 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 19 | 19 | B.1.1.317 | 0.007822 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 18 | 18 | AY.14 | 0.001584 |
ORF1ab/nsp3 | 725 | T725K | aCa | aAa | 18 | 18 | B.1.1.7 | 0.000016 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 17 | 17 | AY.26 | 0.000481 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 17 | 17 | AY.4.5 | 0.001827 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 17 | 17 | AY.46.5 | 0.003373 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 16 | 16 | B | 0.002045 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 16 | 16 | B.1.1.284 | 0.001718 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 16 | 16 | B.1.177.42 | 0.014311 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 16 | 16 | B.1.429 | 0.000376 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 15 | 15 | AY.5 | 0.00031 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 14 | 14 | AY.61 | 0.001467 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 14 | 14 | B.1.1.519 | 0.000556 |
ORF1ab/nsp3 | 725 | T725K | aCa | aAa | 13 | 13 | AY.46.4 | 0.002139 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 13 | 13 | P.1 | 0.000205 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 12 | 12 | AY.119 | 0.000424 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 12 | 12 | AY.39.1 | 0.000475 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 12 | 12 | AY.9.1 | 0.001005 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 11 | 12 | B.1.1 | 0.0002 |
ORF1ab/nsp3 | 725 | T725A | AcA | GcG | 1 | 12 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 725 | T725T | acA | acC | 8 | 12 | B.1.2 | 0.00007 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 2 | 12 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 725 | T725T | acA | acT | 2 | 12 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 10 | 10 | AY.111 | 0.001832 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 10 | 10 | AY.20 | 0.000389 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 10 | 10 | AY.91 | 0.007305 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 10 | 10 | B.1.1.176 | 0.004394 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 10 | 10 | B.1.1.519 | 0.000397 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 10 | 10 | B.1.375 | 0.008197 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 10 | 10 | B.1.617.1 | 0.00129 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 10 | 10 | B.1.637 | 0.000731 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 9 | 9 | AY.24 | 0.003879 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 9 | 9 | B.1.1.222 | 0.001836 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 9 | 9 | B.1.160 | 0.000281 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 9 | 9 | B.1.258.17 | 0.000936 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 9 | 9 | B.1.427 | 0.000454 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 8 | 8 | AY.119 | 0.000282 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 8 | 8 | AY.29 | 0.000126 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 8 | 8 | AY.46.6 | 0.000578 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 8 | 8 | AY.51 | 0.007273 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 8 | 8 | AY.9.2 | 0.000294 |
ORF1ab/nsp3 | 725 | T725K | aCa | aAa | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 8 | 8 | B.1.177.8 | 0.00602 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 8 | 8 | B.1.232 | 0.004299 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 8 | 8 | B.1.243 | 0.000557 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 8 | 8 | B.1.369 | 0.002282 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 8 | 8 | B.1.466 | 0.186047 |
ORF1ab/nsp3 | 725 | T725del1 | Aca | -ca | 7 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 725 | T725del2 | aCA | a-- | 5 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 725 | T725del2 | ACa | --a | 2 | 7 | All | 0 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 7 | 7 | AY.100 | 0.000322 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 7 | 7 | AY.42 | 0.000282 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 7 | 7 | AY.75 | 0.000392 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 7 | 7 | AY.79 | 0.008475 |
ORF1ab/nsp3 | 725 | T725T | acA | acC | 5 | 7 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 2 | 7 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 7 | 7 | B.1.1.186 | 0.024055 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 7 | 7 | B.1.177.21 | 0.000535 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 7 | 7 | B.1.517 | 0.002989 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 7 | 7 | B.1.523 | 0.017157 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 7 | 7 | P.1.17 | 0.001132 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 4 | 6 | AY.3 | 0.00004 |
ORF1ab/nsp3 | 725 | T725T | acA | acC | 1 | 6 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 725 | T725T | acA | acT | 1 | 6 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 3 | 6 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 725 | T725T | acA | acT | 2 | 6 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 725 | T725T | acA | acC | 1 | 6 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 6 | 6 | AY.6 | 0.000247 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 6 | 6 | AY.99.2 | 0.000553 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 6 | 6 | B.1.234 | 0.000792 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 6 | 6 | B.1.236 | 0.01232 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 6 | 6 | B.1.466.2 | 0.002347 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 6 | 6 | B.1.551 | 0.007742 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 6 | 6 | C.37 | 0.000696 |
ORF1ab/nsp3 | 725 | T725P | Aca | Cca | 3 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 725 | T725P | AcA | CcT | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 5 | 5 | AY.106 | 0.001674 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 5 | 5 | AY.12 | 0.00158 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 5 | 5 | B.1.1.63 | 0.001929 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 5 | 5 | B.1.36.24 | 0.030864 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 5 | 5 | B.1.609 | 0.002397 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 3 | 5 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 725 | T725T | acA | acT | 2 | 5 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 725 | T725I | aCA | aTT | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 725 | T725T | acA | acT | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 4 | 4 | AY.101 | 0.001962 |
ORF1ab/nsp3 | 725 | T725T | acA | acT | 2 | 4 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 2 | 4 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 4 | 4 | AY.29.1 | 0.000882 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 2 | 4 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 725 | T725T | acA | acC | 1 | 4 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 725 | T725T | acA | acT | 1 | 4 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 725 | T725K | aCa | aAa | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 4 | 4 | B.1.1.288 | 0.007663 |
ORF1ab/nsp3 | 725 | T725K | aCa | aAa | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp3 | 725 | T725del1 | Aca | -ca | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 4 | 4 | B.1.1.70 | 0.001364 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 4 | 4 | B.1.108 | 0.023256 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 4 | 4 | B.1.177.4 | 0.000844 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 4 | 4 | R.1 | 0.00036 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 3 | 3 | A.27 | 0.004967 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 3 | 3 | AT.1 | 0.015385 |
ORF1ab/nsp3 | 725 | T725T | acA | acC | 2 | 3 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 1 | 3 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 725 | T725del2 | aCA | a-- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 725 | T725K | aCa | aAa | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 3 | 3 | AY.51 | 0.002727 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 3 | 3 | AY.55 | 0.002752 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 3 | 3 | AY.71 | 0.001425 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 3 | 3 | B.1.177.56 | 0.002003 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 3 | 3 | B.1.36.38 | 0.004926 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 3 | 3 | B.1.397 | 0.014563 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 3 | 3 | B.1.426 | 0.003027 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 3 | 3 | B.1.610 | 0.010638 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp3 | 725 | T725H | ACA | CAT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 725 | T725N | aCA | aAT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 725 | T725P | AcA | CcT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 725 | T725L | ACA | CTT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 725 | T725D | ACA | GAT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 725 | T725V | ACA | GTT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 725 | T725A | AcA | GcT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 2 | 2 | A.3 | 0.004193 |
ORF1ab/nsp3 | 725 | T725D | ACA | GAT | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 725 | T725N | aCA | aAT | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 725 | T725V | ACA | GTT | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 725 | T725L | ACA | CTT | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 725 | T725H | ACA | CAT | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | AU.2 | 0.004843 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | AY.109 | 0.001479 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | AY.21 | 0.003795 |
ORF1ab/nsp3 | 725 | T725S | Aca | Tca | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | AY.99.1 | 0.003106 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 2 | 2 | B.1.1.203 | 0.033898 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | B.1.1.300 | 0.021505 |
ORF1ab/nsp3 | 725 | T725S | Aca | Tca | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | B.1.1.378 | 0.014599 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | B.1.1.448 | 0.004065 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | B.1.1.464 | 0.002946 |
ORF1ab/nsp3 | 725 | T725del2 | ACa | --a | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | B.1.128 | 0.001271 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | B.1.160.28 | 0.005848 |
ORF1ab/nsp3 | 725 | T725K | aCa | aAa | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 725 | T725T | acA | acT | 2 | 2 | B.1.306 | 0.011429 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | B.1.398 | 0.005952 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | B.1.409 | 0.001563 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | B.1.618 | 0.008065 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 2 | 2 | B.1.619 | 0.001742 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 2 | 2 | B.6.6 | 0.001778 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | C.33 | 0.117647 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 2 | 2 | N.3 | 0.011628 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 725 | T725K | aCa | aAa | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | A.2.3 | 0.004739 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | AE.5 | 0.018519 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 725 | T725del1 | Aca | -ca | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 725 | T725S | Aca | Tca | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 725 | T725T | acA | acT | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 725 | T725T | acA | acT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 725 | T725T | acA | acC | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 725 | T725S | Aca | Tca | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 725 | T725P | Aca | Cca | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 725 | T725del2 | aCA | a-- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 725 | T725K | aCa | aAa | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 725 | T725K | aCa | aAa | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 725 | T725K | aCa | aAa | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 725 | T725P | Aca | Cca | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 725 | T725S | Aca | Tca | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.1.177 | 0.019231 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.1.239 | 0.032258 |
ORF1ab/nsp3 | 725 | T725T | acA | acT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 725 | T725K | aCa | aAa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.1.407 | 0.041667 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.1.41 | 0.006329 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.1.466 | 0.008696 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.1.53 | 0.013699 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.1.77 | 0.041667 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.115 | 0.021739 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.169 | 0.014925 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.177.80 | 0.001912 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.177.85 | 0.005435 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.201 | 0.005682 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.258.4 | 0.003448 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 725 | T725del2 | aCA | a-- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 725 | T725del1 | Aca | -ca | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp3 | 725 | T725K | aCa | aAa | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.424 | 0.008065 |
ORF1ab/nsp3 | 725 | T725del1 | Aca | -ca | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 725 | T725K | aCa | aAa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 725 | T725S | Aca | Tca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 725 | T725P | Aca | Cca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 1 | 1 | B.11 | 0.005128 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.35 | 0.007812 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | B.6.4 | 0.045455 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | C.40 | 0.027778 |
ORF1ab/nsp3 | 725 | T725T | acA | acT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 725 | T725A | Aca | Gca | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 725 | T725del | ACA | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 725 | T725T | acA | acG | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 725 | T725I | aCa | aTa | 1 | 1 | Y.1 | 0.012821 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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