CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 724 | T724T | T1542T | syn | acC | acT | 21197 | 21127 | 0.996698 | 4889-4891 |
ORF1ab/nsp3 | 724 | T724T | T1542T | syn | acC | acA | 21197 | 66 | 0.00311365 | 4889-4891 |
ORF1ab/nsp3 | 724 | T724T | T1542T | syn | acC | acG | 21197 | 4 | 0.000188706 | 4889-4891 |
ORF1ab/nsp3 | 724 | T724I | T1542I | nonsyn | aCc | aTc | 9276 | 9273 | 0.999677 | 4889-4891 |
ORF1ab/nsp3 | 724 | T724I | T1542I | nonsyn | aCC | aTT | 9276 | 3 | 0.000323415 | 4889-4891 |
ORF1ab/nsp3 | 724 | T724N | T1542N | nonsyn | aCc | aAc | 240 | 240 | 1 | 4889-4891 |
ORF1ab/nsp3 | 724 | T724del | T1542del | del | ACC | --- | 97 | 97 | 1 | 4889-4891 |
ORF1ab/nsp3 | 724 | T724A | T1542A | nonsyn | Acc | Gcc | 31 | 31 | 1 | 4889-4891 |
ORF1ab/nsp3 | 724 | T724del1 | T1542del1 | del | acC | ac- | 7 | 5 | 0.714286 | 4889-4891 |
ORF1ab/nsp3 | 724 | T724del1 | T1542del1 | del | aCc | a-c | 7 | 1 | 0.142857 | 4889-4891 |
ORF1ab/nsp3 | 724 | T724del1 | T1542del1 | del | ACC | -TT | 7 | 1 | 0.142857 | 4889-4891 |
ORF1ab/nsp3 | 724 | T724S | T1542S | nonsyn | AcC | TcA | 5 | 2 | 0.4 | 4889-4891 |
ORF1ab/nsp3 | 724 | T724S | T1542S | nonsyn | Acc | Tcc | 5 | 2 | 0.4 | 4889-4891 |
ORF1ab/nsp3 | 724 | T724S | T1542S | nonsyn | aCc | aGc | 5 | 1 | 0.2 | 4889-4891 |
ORF1ab/nsp3 | 724 | T724P | T1542P | nonsyn | Acc | Ccc | 3 | 3 | 1 | 4889-4891 |
ORF1ab/nsp3 | 724 | T724V | T1542V | nonsyn | ACC | GTT | 3 | 2 | 0.666667 | 4889-4891 |
ORF1ab/nsp3 | 724 | T724V | T1542V | nonsyn | ACC | GTA | 3 | 1 | 0.333333 | 4889-4891 |
ORF1ab/nsp3 | 724 | T724del2 | T1542del2 | del | aCC | a-- | 1 | 1 | 1 | 4889-4891 |
ORF1ab/nsp3 | 724 | T724H | T1542H | nonsyn | ACc | CAc | 1 | 1 | 1 | 4889-4891 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 21127 | 21197 | All | 0.004041 |
ORF1ab/nsp3 | 724 | T724T | acC | acA | 66 | 21197 | All | 0.000013 |
ORF1ab/nsp3 | 724 | T724T | acC | acG | 4 | 21197 | All | 0.000001 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 9273 | 9276 | All | 0.001774 |
ORF1ab/nsp3 | 724 | T724I | aCC | aTT | 3 | 9276 | All | 0.000001 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 8951 | 8955 | AY.4 | 0.013932 |
ORF1ab/nsp3 | 724 | T724T | acC | acA | 4 | 8955 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 4397 | 4397 | AY.70 | 0.916806 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2445 | 2445 | B.1.1.7 | 0.002189 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1954 | 1954 | AY.67 | 0.907149 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1893 | 1902 | B.1.1.7 | 0.001695 |
ORF1ab/nsp3 | 724 | T724T | acC | acA | 9 | 1902 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1427 | 1427 | B.1.214.2 | 0.855516 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1005 | 1016 | B.1.617.2 | 0.003784 |
ORF1ab/nsp3 | 724 | T724T | acC | acA | 11 | 1016 | B.1.617.2 | 0.000041 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 602 | 602 | AY.103 | 0.003738 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 576 | 576 | C.30 | 0.994819 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 519 | 519 | B.1.429 | 0.012211 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 510 | 513 | AY.4 | 0.000794 |
ORF1ab/nsp3 | 724 | T724I | aCC | aTT | 3 | 513 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 392 | 393 | AY.43 | 0.001737 |
ORF1ab/nsp3 | 724 | T724T | acC | acA | 1 | 393 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 289 | 290 | AY.44 | 0.001759 |
ORF1ab/nsp3 | 724 | T724T | acC | acA | 1 | 290 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 275 | 275 | AY.43 | 0.001218 |
ORF1ab/nsp3 | 724 | T724N | aCc | aAc | 240 | 240 | All | 0.000046 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 231 | 233 | AY.47 | 0.007185 |
ORF1ab/nsp3 | 724 | T724T | acC | acA | 2 | 233 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 212 | 212 | B.1.177 | 0.002792 |
ORF1ab/nsp3 | 724 | T724N | aCc | aAc | 203 | 203 | AY.44 | 0.001236 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 186 | 188 | AY.25 | 0.001119 |
ORF1ab/nsp3 | 724 | T724T | acC | acA | 2 | 188 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 178 | 178 | B.1.1.318 | 0.053712 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 170 | 177 | B.1.2 | 0.001497 |
ORF1ab/nsp3 | 724 | T724T | acC | acA | 7 | 177 | B.1.2 | 0.000062 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 161 | 161 | B.1.351.2 | 0.048714 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 149 | 149 | C.30.1 | 1 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 132 | 141 | AY.102 | 0.0035 |
ORF1ab/nsp3 | 724 | T724T | acC | acA | 9 | 141 | AY.102 | 0.000239 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 124 | 129 | AY.103 | 0.00077 |
ORF1ab/nsp3 | 724 | T724T | acC | acA | 5 | 129 | AY.103 | 0.000031 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 127 | 127 | P.1 | 0.002001 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 126 | 126 | B.1.617.2 | 0.000474 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 118 | 118 | B.1.214.3 | 0.842857 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 114 | 114 | B.1.610 | 0.404255 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 113 | 113 | AY.102 | 0.002996 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 113 | 113 | B.1.2 | 0.000995 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 109 | 109 | B.1.214.4 | 0.990909 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 103 | 105 | B.1 | 0.000943 |
ORF1ab/nsp3 | 724 | T724T | acC | acA | 2 | 105 | B.1 | 0.000018 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 97 | 97 | All | 0.000019 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 84 | 84 | AY.4.2 | 0.001822 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 67 | 67 | AY.44 | 0.000408 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 66 | 66 | AY.25 | 0.000397 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 66 | 66 | B.1.1 | 0.001197 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 63 | 63 | B.1.326 | 0.477273 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 57 | 58 | P.1 | 0.000898 |
ORF1ab/nsp3 | 724 | T724T | acC | acA | 1 | 58 | P.1 | 0.000016 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 57 | 57 | B.1.258.11 | 0.022592 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 53 | 53 | AY.3 | 0.000527 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 52 | 52 | B.1.1.519 | 0.002065 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 51 | 51 | B.1 | 0.000467 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 50 | 50 | B.1.177 | 0.000658 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 47 | 49 | AY.39 | 0.001161 |
ORF1ab/nsp3 | 724 | T724T | acC | acA | 2 | 49 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 48 | 49 | B.1.1 | 0.000871 |
ORF1ab/nsp3 | 724 | T724T | acC | acA | 1 | 49 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 45 | 45 | B.1.637 | 0.003288 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 43 | 43 | AY.20 | 0.001671 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 40 | 41 | B.1.160 | 0.001248 |
ORF1ab/nsp3 | 724 | T724T | acC | acA | 1 | 41 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 36 | 36 | AY.3 | 0.000358 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 35 | 35 | B.1.1.7 | 0.000031 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 33 | 33 | AZ.2 | 0.027094 |
ORF1ab/nsp3 | 724 | T724A | Acc | Gcc | 31 | 31 | All | 0.000006 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 31 | 31 | AY.117 | 0.00262 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 30 | 30 | B.1.1.1 | 0.009801 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 26 | 26 | B.1.525 | 0.002942 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 26 | 26 | Q.3 | 0.003771 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 23 | 23 | AY.26 | 0.000651 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 22 | 22 | B.1.1.63 | 0.008488 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 22 | 22 | B.1.311 | 0.006041 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 22 | 22 | B.1.621 | 0.001947 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 21 | 21 | AY.5 | 0.000434 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 21 | 21 | B.1.1.222 | 0.004284 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 21 | 21 | B.1.1.420 | 0.021127 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 21 | 21 | B.1.1.519 | 0.000834 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 21 | 21 | B.1.596 | 0.00183 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 20 | 20 | AY.98.1 | 0.000969 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 20 | 20 | P.1.7 | 0.006386 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 18 | 18 | AY.5 | 0.000372 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 18 | 18 | B.1.160 | 0.000561 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 18 | 18 | B.1.221 | 0.001279 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 17 | 17 | B.1.1.486 | 0.026814 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 16 | 16 | AY.29 | 0.000252 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 16 | 16 | B.1.210 | 0.034115 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 16 | 16 | B.1.427 | 0.000808 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 15 | 15 | AY.119 | 0.00053 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 15 | 15 | B.1.1.189 | 0.022693 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 15 | 15 | B.1.595 | 0.003914 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 14 | 14 | AY.120 | 0.000521 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 14 | 14 | AY.14 | 0.001232 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 14 | 14 | B.1.177.54 | 0.00849 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 14 | 14 | B.1.221 | 0.000994 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 14 | 14 | P.1.4 | 0.013672 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 13 | 13 | AY.106 | 0.004354 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 13 | 13 | AY.42 | 0.000523 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 13 | 13 | B.1.429 | 0.000306 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 13 | 13 | B.1.526 | 0.000306 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 13 | 13 | P.1.14 | 0.000621 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 12 | 12 | AY.62 | 0.005229 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 12 | 12 | B.1.36.8 | 0.012 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 11 | 12 | B.1.427 | 0.000555 |
ORF1ab/nsp3 | 724 | T724T | acC | acA | 1 | 12 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 12 | 12 | P.1.16 | 0.004489 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 10 | 11 | AY.119 | 0.000353 |
ORF1ab/nsp3 | 724 | T724T | acC | acA | 1 | 11 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 11 | 11 | AY.46.6 | 0.000794 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 11 | 11 | AY.47 | 0.000342 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 11 | 11 | AY.9.1 | 0.000921 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 11 | 11 | B.1.1.294 | 0.013924 |
ORF1ab/nsp3 | 724 | T724N | aCc | aAc | 11 | 11 | B.1.177 | 0.000145 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 11 | 11 | B.1.234 | 0.001451 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 11 | 11 | B.1.36 | 0.001605 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 10 | 10 | AY.53 | 0.002875 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 10 | 10 | B.1.258 | 0.000665 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 10 | 10 | B.1.637 | 0.000731 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 10 | 10 | C.37 | 0.001161 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 10 | 10 | P.1.14 | 0.000478 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 10 | 10 | R.1 | 0.0009 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 9 | 9 | AY.100 | 0.000414 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 9 | 9 | AY.23 | 0.000628 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 9 | 9 | AY.29 | 0.000142 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 9 | 9 | AY.33 | 0.000601 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 9 | 9 | AY.9.2 | 0.000331 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 9 | 9 | B.1.177.21 | 0.000688 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 8 | 9 | B.1.351 | 0.000238 |
ORF1ab/nsp3 | 724 | T724T | acC | acA | 1 | 9 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 8 | 8 | AA.5 | 0.129032 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 8 | 8 | AY.23 | 0.000558 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 8 | 8 | AY.3.1 | 0.000682 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 8 | 8 | AY.33 | 0.000534 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 8 | 8 | AY.36 | 0.001186 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 8 | 8 | AY.4.2 | 0.000174 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 8 | 8 | AY.46.3 | 0.00747 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 8 | 8 | AY.84 | 0.0035 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 8 | 8 | B.1.177.44 | 0.004152 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 8 | 8 | B.1.214 | 0.029304 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 8 | 8 | B.1.243 | 0.000557 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 8 | 8 | B.1.36.31 | 0.014011 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 8 | 8 | B.1.595.2 | 0.32 |
ORF1ab/nsp3 | 724 | T724N | aCc | aAc | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 7 | 7 | A.2.5 | 0.003493 |
ORF1ab/nsp3 | 724 | T724del1 | acC | ac- | 5 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 724 | T724del1 | ACC | -TT | 1 | 7 | All | 0 |
ORF1ab/nsp3 | 724 | T724del1 | aCc | a-c | 1 | 7 | All | 0 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 7 | 7 | AY.69 | 0.001307 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 7 | 7 | AY.75 | 0.000392 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 7 | 7 | B.1.1.214 | 0.000388 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 7 | 7 | B.1.1.222 | 0.001428 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 7 | 7 | B.1.219 | 0.066038 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 7 | 7 | B.1.258 | 0.000466 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 7 | 7 | B.1.526 | 0.000165 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 7 | 7 | P.1.4 | 0.006836 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 6 | 6 | AY.118 | 0.000376 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 6 | 6 | AY.121 | 0.000812 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp3 | 724 | T724A | Acc | Gcc | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 6 | 6 | AY.4.5 | 0.000645 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 5 | 6 | AY.46 | 0.00052 |
ORF1ab/nsp3 | 724 | T724T | acC | acA | 1 | 6 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 6 | 6 | AY.46.4 | 0.000987 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 6 | 6 | AY.7.1 | 0.000676 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 6 | 6 | B.1.1.301 | 0.007075 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 6 | 6 | B.1.177.46 | 0.00551 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 6 | 6 | B.1.214.1 | 0.12 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 6 | 6 | B.1.438.1 | 0.000644 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 6 | 6 | P.2 | 0.00112 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 6 | 6 | Q.1 | 0.000758 |
ORF1ab/nsp3 | 724 | T724S | AcC | TcA | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 724 | T724S | Acc | Tcc | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 724 | T724S | aCc | aGc | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 5 | 5 | AY.4.4 | 0.002046 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 5 | 5 | AY.5.4 | 0.001384 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 5 | 5 | AY.54 | 0.000477 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 5 | 5 | AY.68 | 0.001369 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 5 | 5 | AY.92 | 0.001436 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 5 | 5 | AY.94 | 0.002213 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 5 | 5 | AY.99.2 | 0.000461 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 5 | 5 | B.1.1.25 | 0.002843 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 5 | 5 | B.1.1.306 | 0.002192 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 5 | 5 | B.1.1.432 | 0.006329 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 5 | 5 | B.1.409 | 0.003906 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 5 | 5 | B.1.571 | 0.048544 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 5 | 5 | B.1.631 | 0.016835 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 5 | 5 | P.1.15 | 0.001162 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 4 | 4 | AY.32 | 0.00213 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 4 | 4 | AY.41 | 0.001176 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 4 | 4 | AY.65 | 0.002132 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 4 | 4 | B | 0.000511 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 4 | 4 | B.1.1.317 | 0.001647 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 4 | 4 | B.1.111 | 0.0047 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 4 | 4 | B.1.128 | 0.002541 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 4 | 4 | B.1.351.2 | 0.00121 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp3 | 724 | T724A | Acc | Gcc | 4 | 4 | B.1.36.18 | 0.001681 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 4 | 4 | B.1.428 | 0.004082 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 4 | 4 | B.1.620 | 0.003784 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 4 | 4 | C.23 | 0.023256 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 3 | 4 | D.2 | 0.000225 |
ORF1ab/nsp3 | 724 | T724T | acC | acG | 1 | 4 | D.2 | 0.000075 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp3 | 724 | T724P | Acc | Ccc | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 724 | T724V | ACC | GTT | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 724 | T724V | ACC | GTA | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 3 | 3 | AY.109 | 0.002219 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 3 | 3 | AY.24 | 0.001293 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp3 | 724 | T724A | Acc | Gcc | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 3 | 3 | AY.52 | 0.002443 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 3 | 3 | AY.93 | 0.000819 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 3 | 3 | B | 0.000383 |
ORF1ab/nsp3 | 724 | T724A | Acc | Gcc | 3 | 3 | B.1.1.141 | 0.006036 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 3 | 3 | B.1.1.294 | 0.003797 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 3 | 3 | B.1.1.333 | 0.003229 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp3 | 724 | T724del1 | acC | ac- | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 3 | 3 | B.1.126 | 0.003827 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 3 | 3 | B.1.177.51 | 0.013699 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 3 | 3 | B.1.177.62 | 0.003576 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 3 | 3 | B.1.177.73 | 0.001699 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 3 | 3 | B.1.258.3 | 0.005025 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 3 | 3 | B.1.351.3 | 0.002629 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 3 | 3 | B.1.36.1 | 0.003421 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 3 | 3 | B.1.361 | 0.003866 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 3 | 3 | B.1.396 | 0.002117 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 3 | 3 | B.1.433 | 0.009585 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 3 | 3 | B.1.456 | 0.009804 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 3 | 3 | B.1.509 | 0.002597 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 3 | 3 | B.1.93 | 0.002801 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 3 | 3 | C.36.3 | 0.001702 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp3 | 724 | T724S | AcC | TcA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 724 | T724V | ACC | GTT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 2 | A | 0.000387 |
ORF1ab/nsp3 | 724 | T724T | acC | acG | 1 | 2 | A | 0.000387 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 2 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 724 | T724T | acC | acA | 1 | 2 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp3 | 724 | T724A | Acc | Gcc | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 724 | T724N | aCc | aAc | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 724 | T724N | aCc | aAc | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | AY.4.3 | 0.001684 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | AY.46.3 | 0.001867 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp3 | 724 | T724N | aCc | aAc | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | AY.86 | 0.00166 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | AY.90 | 0.001369 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | AY.96 | 0.004149 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 724 | T724A | Acc | Gcc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | B.1.1.117 | 0.019417 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | B.1.1.189 | 0.003026 |
ORF1ab/nsp3 | 724 | T724T | acC | acG | 2 | 2 | B.1.1.192 | 0.004619 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | B.1.1.379 | 0.0625 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | B.1.1.523 | 0.003125 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | B.1.1.67 | 0.009132 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | B.1.157 | 0.00597 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | B.1.177.58 | 0.002663 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | B.1.258.14 | 0.001961 |
ORF1ab/nsp3 | 724 | T724N | aCc | aAc | 2 | 2 | B.1.258.3 | 0.00335 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | B.1.265 | 0.002541 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | B.1.320 | 0.002491 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | B.1.348 | 0.036364 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | B.1.389 | 0.002004 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | B.1.404 | 0.002604 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | B.1.538 | 0.016129 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | B.1.564.1 | 0.003155 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | B.1.574 | 0.004301 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 724 | T724A | Acc | Gcc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 2 | 2 | B.1.619 | 0.001742 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp3 | 724 | T724T | acC | acA | 2 | 2 | B.1.634 | 0.006849 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | C.23 | 0.011628 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 724 | T724del2 | aCC | a-- | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 724 | T724H | ACc | CAc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 724 | T724A | Acc | Gcc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 724 | T724A | Acc | Gcc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 724 | T724del1 | acC | ac- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 724 | T724N | aCc | aAc | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 724 | T724A | Acc | Gcc | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 724 | T724A | Acc | Gcc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 724 | T724S | aCc | aGc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 724 | T724del1 | acC | ac- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 724 | T724N | aCc | aAc | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 724 | T724P | Acc | Ccc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 724 | T724V | ACC | GTA | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 724 | T724A | Acc | Gcc | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 724 | T724N | aCc | aAc | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 724 | T724N | aCc | aAc | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 724 | T724A | Acc | Gcc | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp3 | 724 | T724H | ACc | CAc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 724 | T724N | aCc | aAc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 724 | T724A | Acc | Gcc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 724 | T724del1 | ACC | -TT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.1.196 | 0.005714 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp3 | 724 | T724A | Acc | Gcc | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.1.226 | 0.005814 |
ORF1ab/nsp3 | 724 | T724S | Acc | Tcc | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.1.240 | 0.004695 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp3 | 724 | T724N | aCc | aAc | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 724 | T724N | aCc | aAc | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.1.339 | 0.010526 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.1.362 | 0.005618 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 724 | T724P | Acc | Ccc | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.1.379 | 0.03125 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.1.419 | 0.007407 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.1.428 | 0.009434 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.1.440 | 0.011765 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.1.57 | 0.011494 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 724 | T724P | Acc | Ccc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 724 | T724N | aCc | aAc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.1.98 | 0.018519 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.164 | 0.014925 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.177.24 | 0.001295 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 724 | T724T | acC | acA | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.192 | 0.009259 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 724 | T724N | aCc | aAc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 724 | T724S | Acc | Tcc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.201 | 0.005682 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.221.2 | 0.004016 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.264.1 | 0.047619 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.264.1 | 0.047619 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.281 | 0.021739 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.314 | 0.007519 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 724 | T724del1 | aCc | a-c | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp3 | 724 | T724del2 | aCC | a-- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.418 | 0.015873 |
ORF1ab/nsp3 | 724 | T724A | Acc | Gcc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.466.1 | 0.007194 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.501 | 0.007353 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.537 | 0.02 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | B.1.633 | 0.041667 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | K.3 | 0.006173 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | N.1 | 0.016949 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 724 | T724del | ACC | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 724 | T724N | aCc | aAc | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 724 | T724I | aCc | aTc | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 724 | T724T | acC | acT | 1 | 1 | Y.1 | 0.012821 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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