CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 723 & Codon = Tct

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3723P723SP1541SnonsynCctTct150215000.9986684886-4888

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3723P723SCctTct15001502All0.000287
ORF1ab/nsp3723P723SCctTct352352B.1.1.70.000315
ORF1ab/nsp3723P723SCctTct157157AY.40.000244
ORF1ab/nsp3723P723SCctTct132132B.1.617.20.000497
ORF1ab/nsp3723P723SCctTct7979B.1.20.000696
ORF1ab/nsp3723P723SCctTct7171AY.440.000432
ORF1ab/nsp3723P723SCctTct4646B.1.5250.005205
ORF1ab/nsp3723P723SCctTct4040AY.30.000398
ORF1ab/nsp3723P723SCctTct4040B.1.1770.000527
ORF1ab/nsp3723P723SCctTct3939AY.430.000173
ORF1ab/nsp3723P723SCctTct3737B.1.1.2140.002052
ORF1ab/nsp3723P723SCctTct3434AY.1030.000211
ORF1ab/nsp3723P723SCctTct2727B.1.1600.000842
ORF1ab/nsp3723P723SCctTct2525B.1.10.000454
ORF1ab/nsp3723P723SCctTct2525B.1.5921
ORF1ab/nsp3723P723SCctTct2222AY.250.000132
ORF1ab/nsp3723P723SCctTct2222B.10.000202
ORF1ab/nsp3723P723SCctTct1313B.1.4290.000306
ORF1ab/nsp3723P723SCctTct1313P.1.100.003503
ORF1ab/nsp3723P723SCctTct1111B.1.258.170.001144
ORF1ab/nsp3723P723SCctTct1111P.10.000173
ORF1ab/nsp3723P723SCctTct99AY.1020.000239
ORF1ab/nsp3723P723SCctTct99AY.1110.001648
ORF1ab/nsp3723P723SCctTct99AY.1180.000564
ORF1ab/nsp3723P723SCctTct99B.1.3490.006433
ORF1ab/nsp3723P723SCctTct88AY.200.000311
ORF1ab/nsp3723P723SCctTct77B.1.177.860.001284
ORF1ab/nsp3723P723SCctTct77B.1.5260.000165
ORF1ab/nsp3723P723SCctTct66AY.16.10.00282
ORF1ab/nsp3723P723SCctTct66AY.390.000148
ORF1ab/nsp3723P723SCctTct66AY.980.000474
ORF1ab/nsp3723P723SCctTct66B.1.2210.000426
ORF1ab/nsp3723P723SCctTct55AY.1200.000186
ORF1ab/nsp3723P723SCctTct55AY.290.000079
ORF1ab/nsp3723P723SCctTct55AY.3.10.000426
ORF1ab/nsp3723P723SCctTct55AY.380.002496
ORF1ab/nsp3723P723SCctTct55AY.46.60.000361
ORF1ab/nsp3723P723SCctTct55AY.540.000477
ORF1ab/nsp3723P723SCctTct55P.1.140.000239
ORF1ab/nsp3723P723SCctTct44B.1.3510.000119
ORF1ab/nsp3723P723SCctTct44B.1.4270.000202
ORF1ab/nsp3723P723SCctTct44B.1.5950.001044
ORF1ab/nsp3723P723SCctTct44B.1.6370.000292
ORF1ab/nsp3723P723SCctTct44N.50.007067
ORF1ab/nsp3723P723SCctTct33AY.1000.000138
ORF1ab/nsp3723P723SCctTct33AY.1050.001929
ORF1ab/nsp3723P723SCctTct33AY.1170.000254
ORF1ab/nsp3723P723SCctTct33AY.330.0002
ORF1ab/nsp3723P723SCctTct33AY.4.20.000065
ORF1ab/nsp3723P723SCctTct33B.1.1.2840.000322
ORF1ab/nsp3723P723SCctTct33B.1.1.3720.002066
ORF1ab/nsp3723P723SCctTct33B.1.177.100.002634
ORF1ab/nsp3723P723SCctTct33B.1.2400.000647
ORF1ab/nsp3723P723SCctTct33B.1.2430.000209
ORF1ab/nsp3723P723SCctTct33B.1.360.000438
ORF1ab/nsp3723P723SCctTct33B.1.5960.000261
ORF1ab/nsp3723P723SCctTct33D.20.000225
ORF1ab/nsp3723P723SCctTct33P.1.170.000485
ORF1ab/nsp3723P723SCctTct33P.20.00056
ORF1ab/nsp3723P723SCctTct33Q.10.000379
ORF1ab/nsp3723P723SCctTct22AY.1070.000932
ORF1ab/nsp3723P723SCctTct22AY.1080.002205
ORF1ab/nsp3723P723SCctTct22AY.1190.000071
ORF1ab/nsp3723P723SCctTct22AY.140.000176
ORF1ab/nsp3723P723SCctTct22AY.350.000466
ORF1ab/nsp3723P723SCctTct22AY.420.00008
ORF1ab/nsp3723P723SCctTct22AY.60.000082
ORF1ab/nsp3723P723SCctTct22AY.880.001768
ORF1ab/nsp3723P723SCctTct22AY.9.20.000073
ORF1ab/nsp3723P723SCctTct22B.1.1.2650.006309
ORF1ab/nsp3723P723SCctTct22B.1.177.150.001262
ORF1ab/nsp3723P723SCctTct22B.1.1920.018519
ORF1ab/nsp3723P723SCctTct22B.1.2390.002442
ORF1ab/nsp3723P723SCctTct22B.1.2580.000133
ORF1ab/nsp3723P723SCctTct22B.1.258.220.005333
ORF1ab/nsp3723P723SCctTct22B.1.3050.004301
ORF1ab/nsp3723P723SCctTct22B.1.3560.003454
ORF1ab/nsp3723P723SCctTct22B.1.5170.000854
ORF1ab/nsp3723P723SCctTct11A.10.000282
ORF1ab/nsp3723P723SCctTct11A.20.000662
ORF1ab/nsp3723P723SCctTct11A.23.10.000704
ORF1ab/nsp3723P723SCctTct11AY.1100.000113
ORF1ab/nsp3723P723SCctTct11AY.120.000316
ORF1ab/nsp3723P723SCctTct11AY.120.2.10.000498
ORF1ab/nsp3723P723SCctTct11AY.1210.000135
ORF1ab/nsp3723P723SCctTct11AY.160.00038
ORF1ab/nsp3723P723SCctTct11AY.230.00007
ORF1ab/nsp3723P723SCctTct11AY.360.000148
ORF1ab/nsp3723P723SCctTct11AY.4.2.10.000149
ORF1ab/nsp3723P723SCctTct11AY.4.50.000107
ORF1ab/nsp3723P723SCctTct11AY.450.000122
ORF1ab/nsp3723P723SCctTct11AY.46.20.000635
ORF1ab/nsp3723P723SCctTct11AY.46.40.000165
ORF1ab/nsp3723P723SCctTct11AY.46.50.000198
ORF1ab/nsp3723P723SCctTct11AY.470.000031
ORF1ab/nsp3723P723SCctTct11AY.50.000021
ORF1ab/nsp3723P723SCctTct11AY.5.10.003759
ORF1ab/nsp3723P723SCctTct11AY.740.000116
ORF1ab/nsp3723P723SCctTct11AY.75.10.00018
ORF1ab/nsp3723P723SCctTct11AY.790.001211
ORF1ab/nsp3723P723SCctTct11AY.870.000833
ORF1ab/nsp3723P723SCctTct11AY.9.10.000084
ORF1ab/nsp3723P723SCctTct11AY.920.000287
ORF1ab/nsp3723P723SCctTct11AY.98.10.000048
ORF1ab/nsp3723P723SCctTct11AY.99.20.000092
ORF1ab/nsp3723P723SCctTct11B.1.1.1860.003436
ORF1ab/nsp3723P723SCctTct11B.1.1.2160.00089
ORF1ab/nsp3723P723SCctTct11B.1.1.2220.000204
ORF1ab/nsp3723P723SCctTct11B.1.1.250.000569
ORF1ab/nsp3723P723SCctTct11B.1.1.280.000311
ORF1ab/nsp3723P723SCctTct11B.1.1.3110.000358
ORF1ab/nsp3723P723SCctTct11B.1.1.3260.001761
ORF1ab/nsp3723P723SCctTct11B.1.1.3370.003597
ORF1ab/nsp3723P723SCctTct11B.1.1.370.000193
ORF1ab/nsp3723P723SCctTct11B.1.1.3850.004464
ORF1ab/nsp3723P723SCctTct11B.1.1.390.00051
ORF1ab/nsp3723P723SCctTct11B.1.1.510.001718
ORF1ab/nsp3723P723SCctTct11B.1.1.5190.00004
ORF1ab/nsp3723P723SCctTct11B.1.1040.00369
ORF1ab/nsp3723P723SCctTct11B.1.1280.000635
ORF1ab/nsp3723P723SCctTct11B.1.160.160.000929
ORF1ab/nsp3723P723SCctTct11B.1.177.110.001698
ORF1ab/nsp3723P723SCctTct11B.1.177.120.000152
ORF1ab/nsp3723P723SCctTct11B.1.177.210.000076
ORF1ab/nsp3723P723SCctTct11B.1.177.40.000211
ORF1ab/nsp3723P723SCctTct11B.1.177.510.004566
ORF1ab/nsp3723P723SCctTct11B.1.177.520.001757
ORF1ab/nsp3723P723SCctTct11B.1.177.580.001332
ORF1ab/nsp3723P723SCctTct11B.1.177.600.000218
ORF1ab/nsp3723P723SCctTct11B.1.177.690.001484
ORF1ab/nsp3723P723SCctTct11B.1.177.70.000165
ORF1ab/nsp3723P723SCctTct11B.1.177.770.000726
ORF1ab/nsp3723P723SCctTct11B.1.177.830.001481
ORF1ab/nsp3723P723SCctTct11B.1.258.30.001675
ORF1ab/nsp3723P723SCctTct11B.1.2650.001271
ORF1ab/nsp3723P723SCctTct11B.1.3500.002933
ORF1ab/nsp3723P723SCctTct11B.1.36.100.004785
ORF1ab/nsp3723P723SCctTct11B.1.36.190.009259
ORF1ab/nsp3723P723SCctTct11B.1.36.290.000517
ORF1ab/nsp3723P723SCctTct11B.1.36.310.001751
ORF1ab/nsp3723P723SCctTct11B.1.3690.000285
ORF1ab/nsp3723P723SCctTct11B.1.4220.000812
ORF1ab/nsp3723P723SCctTct11B.1.4260.001009
ORF1ab/nsp3723P723SCctTct11B.1.4520.013699
ORF1ab/nsp3723P723SCctTct11B.1.466.20.000391
ORF1ab/nsp3723P723SCctTct11B.1.5230.002451
ORF1ab/nsp3723P723SCctTct11B.1.5600.00463
ORF1ab/nsp3723P723SCctTct11B.1.5650.00081
ORF1ab/nsp3723P723SCctTct11B.1.575.10.002439
ORF1ab/nsp3723P723SCctTct11B.1.5800.004065
ORF1ab/nsp3723P723SCctTct11B.1.6100.003546
ORF1ab/nsp3723P723SCctTct11B.1.80.001972
ORF1ab/nsp3723P723SCctTct11B.1.930.000934
ORF1ab/nsp3723P723SCctTct11B.400.000364
ORF1ab/nsp3723P723SCctTct11C.10.002392
ORF1ab/nsp3723P723SCctTct11C.370.000116
ORF1ab/nsp3723P723SCctTct11P.1.120.000484
ORF1ab/nsp3723P723SCctTct11P.1.90.004808
ORF1ab/nsp3723P723SCctTct11Q.30.000145
ORF1ab/nsp3723P723SCctTct11Q.80.000165
ORF1ab/nsp3723P723SCctTct11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.