CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 723

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3723P723SP1541SnonsynCctTct150215000.9986684886-4888
ORF1ab/nsp3723P723SP1541SnonsynCcTTcA150220.001331564886-4888
ORF1ab/nsp3723P723PP1541PsynccTccC8705050.580464886-4888
ORF1ab/nsp3723P723PP1541PsynccTccA8703390.3896554886-4888
ORF1ab/nsp3723P723PP1541PsynccTccG870260.02988514886-4888
ORF1ab/nsp3723P723LP1541LnonsyncCtcTt7417390.9973014886-4888
ORF1ab/nsp3723P723LP1541LnonsyncCTcTA74120.002699064886-4888
ORF1ab/nsp3723P723delP1541deldelCCT---10310314886-4888
ORF1ab/nsp3723P723HP1541HnonsyncCtcAt36340.9444444886-4888
ORF1ab/nsp3723P723HP1541HnonsyncCTcAC3620.05555564886-4888
ORF1ab/nsp3723P723TP1541TnonsynCctAct32300.93754886-4888
ORF1ab/nsp3723P723TP1541TnonsynCcTAcA3220.06254886-4888
ORF1ab/nsp3723P723del1P1541del1delCct-ct950.5555564886-4888
ORF1ab/nsp3723P723del1P1541del1delccTcc-940.4444444886-4888
ORF1ab/nsp3723P723AP1541AnonsynCctGct5514886-4888
ORF1ab/nsp3723P723RP1541RnonsyncCtcGt3314886-4888
ORF1ab/nsp3723P723del2P1541del2delCCt--t320.6666674886-4888
ORF1ab/nsp3723P723del2P1541del2delcCTc--310.3333334886-4888
ORF1ab/nsp3723P723CP1541CnonsynCCtTGt1114886-4888
ORF1ab/nsp3723P723NP1541NnonsynCCtAAt1114886-4888
ORF1ab/nsp3723P723QP1541QnonsyncCTcAG1114886-4888

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3723P723SCctTct15001502All0.000287
ORF1ab/nsp3723P723SCcTTcA21502All0
ORF1ab/nsp3723P723PccTccC505870All0.000097
ORF1ab/nsp3723P723PccTccA339870All0.000065
ORF1ab/nsp3723P723PccTccG26870All0.000005
ORF1ab/nsp3723P723LcCtcTt739741All0.000141
ORF1ab/nsp3723P723LcCTcTA2741All0
ORF1ab/nsp3723P723SCctTct352352B.1.1.70.000315
ORF1ab/nsp3723P723LcCtcTt306306AY.50.006319
ORF1ab/nsp3723P723SCctTct157157AY.40.000244
ORF1ab/nsp3723P723PccTccA140142B.1.4920.985915
ORF1ab/nsp3723P723PccTccC2142B.1.4920.014085
ORF1ab/nsp3723P723SCctTct132132B.1.617.20.000497
ORF1ab/nsp3723P723LcCtcTt120120B.1.1.70.000107
ORF1ab/nsp3723P723delCCT---103103All0.00002
ORF1ab/nsp3723P723PccTccA9696B.1.177.450.036599
ORF1ab/nsp3723P723PccTccC4084B.1.1.70.000036
ORF1ab/nsp3723P723PccTccA2484B.1.1.70.000021
ORF1ab/nsp3723P723PccTccG2084B.1.1.70.000018
ORF1ab/nsp3723P723PccTccC8080AY.50.001652
ORF1ab/nsp3723P723SCctTct7979B.1.20.000696
ORF1ab/nsp3723P723LcCtcTt7575AY.40.000117
ORF1ab/nsp3723P723SCctTct7171AY.440.000432
ORF1ab/nsp3723P723PccTccC5254AY.40.000081
ORF1ab/nsp3723P723PccTccA154AY.40.000002
ORF1ab/nsp3723P723PccTccG154AY.40.000002
ORF1ab/nsp3723P723PccTccC4848AY.99.20.004424
ORF1ab/nsp3723P723SCctTct4646B.1.5250.005205
ORF1ab/nsp3723P723PccTccC3943B.1.617.20.000147
ORF1ab/nsp3723P723PccTccA443B.1.617.20.000015
ORF1ab/nsp3723P723PccTccC3940AY.250.000235
ORF1ab/nsp3723P723PccTccG140AY.250.000006
ORF1ab/nsp3723P723SCctTct4040AY.30.000398
ORF1ab/nsp3723P723SCctTct4040B.1.1770.000527
ORF1ab/nsp3723P723LcCtcTt3940B.1.617.20.000147
ORF1ab/nsp3723P723LcCTcTA140B.1.617.20.000004
ORF1ab/nsp3723P723SCctTct3939AY.430.000173
ORF1ab/nsp3723P723SCctTct3737B.1.1.2140.002052
ORF1ab/nsp3723P723HcCtcAt3436All0.000007
ORF1ab/nsp3723P723HcCTcAC236All0
ORF1ab/nsp3723P723SCctTct3434AY.1030.000211
ORF1ab/nsp3723P723TCctAct3032All0.000006
ORF1ab/nsp3723P723TCcTAcA232All0
ORF1ab/nsp3723P723delCCT---3030B.1.1.70.000027
ORF1ab/nsp3723P723PccTccC2929B.1.617.10.00374
ORF1ab/nsp3723P723SCctTct2727B.1.1600.000842
ORF1ab/nsp3723P723PccTccC2125AY.1030.00013
ORF1ab/nsp3723P723PccTccA425AY.1030.000025
ORF1ab/nsp3723P723SCctTct2525B.1.10.000454
ORF1ab/nsp3723P723SCctTct2525B.1.5921
ORF1ab/nsp3723P723PccTccC2224AY.430.000097
ORF1ab/nsp3723P723PccTccG124AY.430.000004
ORF1ab/nsp3723P723PccTccA124AY.430.000004
ORF1ab/nsp3723P723PccTccA2323AY.1200.000855
ORF1ab/nsp3723P723SCctTct2222AY.250.000132
ORF1ab/nsp3723P723SCctTct2222B.10.000202
ORF1ab/nsp3723P723PccTccA1319AY.1020.000345
ORF1ab/nsp3723P723PccTccC619AY.1020.000159
ORF1ab/nsp3723P723LcCtcTt1515AY.250.00009
ORF1ab/nsp3723P723PccTccC1515AY.610.001572
ORF1ab/nsp3723P723SCctTct1313B.1.4290.000306
ORF1ab/nsp3723P723SCctTct1313P.1.100.003503
ORF1ab/nsp3723P723LcCtcTt1212AY.30.000119
ORF1ab/nsp3723P723HcCtcAt1111B.1.20.000097
ORF1ab/nsp3723P723SCctTct1111B.1.258.170.001144
ORF1ab/nsp3723P723SCctTct1111P.10.000173
ORF1ab/nsp3723P723PccTccC1010AY.390.000247
ORF1ab/nsp3723P723LcCtcTt1010AY.440.000061
ORF1ab/nsp3723P723del1Cct-ct59All0.000001
ORF1ab/nsp3723P723del1ccTcc-49All0.000001
ORF1ab/nsp3723P723SCctTct99AY.1020.000239
ORF1ab/nsp3723P723SCctTct99AY.1110.001648
ORF1ab/nsp3723P723SCctTct99AY.1180.000564
ORF1ab/nsp3723P723delCCT---99B.1.1770.000119
ORF1ab/nsp3723P723SCctTct99B.1.3490.006433
ORF1ab/nsp3723P723SCctTct88AY.200.000311
ORF1ab/nsp3723P723LcCtcTt88AY.420.000322
ORF1ab/nsp3723P723PccTccC88B.1.20.00007
ORF1ab/nsp3723P723LcCtcTt77AY.1030.000043
ORF1ab/nsp3723P723PccTccC57AY.440.00003
ORF1ab/nsp3723P723PccTccA27AY.440.000012
ORF1ab/nsp3723P723SCctTct77B.1.177.860.001284
ORF1ab/nsp3723P723PccTccC77B.1.2210.000497
ORF1ab/nsp3723P723SCctTct77B.1.5260.000165
ORF1ab/nsp3723P723delCCT---77B.1.617.20.000026
ORF1ab/nsp3723P723PccTccA77Q.10.000884
ORF1ab/nsp3723P723LcCtcTt77Q.30.001015
ORF1ab/nsp3723P723LcCtcTt66AY.1020.000159
ORF1ab/nsp3723P723SCctTct66AY.16.10.00282
ORF1ab/nsp3723P723PccTccC46AY.290.000063
ORF1ab/nsp3723P723PccTccG26AY.290.000032
ORF1ab/nsp3723P723SCctTct66AY.390.000148
ORF1ab/nsp3723P723HcCtcAt66AY.40.000009
ORF1ab/nsp3723P723SCctTct66AY.980.000474
ORF1ab/nsp3723P723SCctTct66B.1.2210.000426
ORF1ab/nsp3723P723HcCtcAt66B.1.4270.000303
ORF1ab/nsp3723P723PccTccA36B.1.5260.000071
ORF1ab/nsp3723P723PccTccC36B.1.5260.000071
ORF1ab/nsp3723P723TCctAct66B.1.617.20.000023
ORF1ab/nsp3723P723ACctGct55All0.000001
ORF1ab/nsp3723P723LcCtcTt55AY.1110.000916
ORF1ab/nsp3723P723LcCtcTt55AY.1190.000177
ORF1ab/nsp3723P723SCctTct55AY.1200.000186
ORF1ab/nsp3723P723LcCtcTt55AY.140.00044
ORF1ab/nsp3723P723SCctTct55AY.290.000079
ORF1ab/nsp3723P723SCctTct55AY.3.10.000426
ORF1ab/nsp3723P723SCctTct55AY.380.002496
ORF1ab/nsp3723P723delCCT---55AY.40.000008
ORF1ab/nsp3723P723delCCT---55AY.430.000022
ORF1ab/nsp3723P723LcCtcTt55AY.430.000022
ORF1ab/nsp3723P723SCctTct55AY.46.60.000361
ORF1ab/nsp3723P723SCctTct55AY.540.000477
ORF1ab/nsp3723P723LcCtcTt55B.10.000046
ORF1ab/nsp3723P723LcCtcTt55B.1.20.000044
ORF1ab/nsp3723P723LcCtcTt55D.20.000375
ORF1ab/nsp3723P723SCctTct55P.1.140.000239
ORF1ab/nsp3723P723LcCtcTt44AY.39.10.000158
ORF1ab/nsp3723P723TCctAct44AY.40.000006
ORF1ab/nsp3723P723PccTccC44AY.9.20.000147
ORF1ab/nsp3723P723LcCtcTt44AY.98.10.000194
ORF1ab/nsp3723P723HcCtcAt44B.10.000037
ORF1ab/nsp3723P723PccTccC44B.1.1.5190.000159
ORF1ab/nsp3723P723LcCtcTt44B.1.1600.000125
ORF1ab/nsp3723P723SCctTct44B.1.3510.000119
ORF1ab/nsp3723P723SCctTct44B.1.4270.000202
ORF1ab/nsp3723P723SCctTct44B.1.5950.001044
ORF1ab/nsp3723P723SCctTct44B.1.6370.000292
ORF1ab/nsp3723P723SCctTct44N.50.007067
ORF1ab/nsp3723P723LcCtcTt44P.10.000063
ORF1ab/nsp3723P723PccTccC33AE.80.001467
ORF1ab/nsp3723P723RcCtcGt33All0.000001
ORF1ab/nsp3723P723del2CCt--t23All0
ORF1ab/nsp3723P723del2cCTc--13All0
ORF1ab/nsp3723P723TCctAct33AY.1000.000138
ORF1ab/nsp3723P723SCctTct33AY.1000.000138
ORF1ab/nsp3723P723SCctTct33AY.1050.001929
ORF1ab/nsp3723P723SCctTct33AY.1170.000254
ORF1ab/nsp3723P723PccTccC33AY.1190.000106
ORF1ab/nsp3723P723PccTccC33AY.140.000264
ORF1ab/nsp3723P723PccTccC33AY.260.000085
ORF1ab/nsp3723P723SCctTct33AY.330.0002
ORF1ab/nsp3723P723SCctTct33AY.4.20.000065
ORF1ab/nsp3723P723delCCT---33AY.440.000018
ORF1ab/nsp3723P723PccTccC33AY.470.000093
ORF1ab/nsp3723P723PccTccC33AY.75.10.000541
ORF1ab/nsp3723P723LcCtcTt33AY.980.000237
ORF1ab/nsp3723P723PccTccA23B.10.000018
ORF1ab/nsp3723P723PccTccC13B.10.000009
ORF1ab/nsp3723P723LcCtcTt33B.1.1.2140.000166
ORF1ab/nsp3723P723SCctTct33B.1.1.2840.000322
ORF1ab/nsp3723P723SCctTct33B.1.1.3720.002066
ORF1ab/nsp3723P723HcCtcAt33B.1.1.70.000003
ORF1ab/nsp3723P723LcCtcTt33B.1.1770.00004
ORF1ab/nsp3723P723PccTccC33B.1.1770.00004
ORF1ab/nsp3723P723SCctTct33B.1.177.100.002634
ORF1ab/nsp3723P723LcCtcTt33B.1.177.750.003122
ORF1ab/nsp3723P723LcCtcTt33B.1.177.810.000568
ORF1ab/nsp3723P723SCctTct33B.1.2400.000647
ORF1ab/nsp3723P723SCctTct33B.1.2430.000209
ORF1ab/nsp3723P723PccTccA33B.1.2580.0002
ORF1ab/nsp3723P723SCctTct33B.1.360.000438
ORF1ab/nsp3723P723SCctTct33B.1.5960.000261
ORF1ab/nsp3723P723SCctTct33D.20.000225
ORF1ab/nsp3723P723PccTccA33P.10.000047
ORF1ab/nsp3723P723SCctTct33P.1.170.000485
ORF1ab/nsp3723P723SCctTct33P.20.00056
ORF1ab/nsp3723P723SCctTct33Q.10.000379
ORF1ab/nsp3723P723TCcTAcA220.111111
ORF1ab/nsp3723P723RcCtcGt220.111111
ORF1ab/nsp3723P723SCcTTcA220.111111
ORF1ab/nsp3723P723TCctAct22AY.1030.000012
ORF1ab/nsp3723P723SCctTct22AY.1070.000932
ORF1ab/nsp3723P723SCctTct22AY.1080.002205
ORF1ab/nsp3723P723LcCtcTt22AY.1170.000169
ORF1ab/nsp3723P723SCctTct22AY.1190.000071
ORF1ab/nsp3723P723TCctAct22AY.1190.000071
ORF1ab/nsp3723P723PccTccA22AY.1210.000271
ORF1ab/nsp3723P723SCctTct22AY.140.000176
ORF1ab/nsp3723P723PccTccC22AY.200.000078
ORF1ab/nsp3723P723delCCT---22AY.250.000012
ORF1ab/nsp3723P723delCCT---22AY.30.00002
ORF1ab/nsp3723P723SCctTct22AY.350.000466
ORF1ab/nsp3723P723TCctAct22AY.350.000466
ORF1ab/nsp3723P723LcCtcTt22AY.380.000999
ORF1ab/nsp3723P723LcCtcTt22AY.4.20.000043
ORF1ab/nsp3723P723SCctTct22AY.420.00008
ORF1ab/nsp3723P723PccTccA22AY.46.40.000329
ORF1ab/nsp3723P723SCctTct22AY.60.000082
ORF1ab/nsp3723P723LcCtcTt22AY.700.000417
ORF1ab/nsp3723P723SCctTct22AY.880.001768
ORF1ab/nsp3723P723LcCtcTt22AY.90.000135
ORF1ab/nsp3723P723SCctTct22AY.9.20.000073
ORF1ab/nsp3723P723LcCTcTA12B0.000128
ORF1ab/nsp3723P723LcCtcTt12B0.000128
ORF1ab/nsp3723P723delCCT---22B.10.000018
ORF1ab/nsp3723P723PccTccC22B.1.10.000036
ORF1ab/nsp3723P723delCCT---22B.1.10.000036
ORF1ab/nsp3723P723LcCtcTt22B.1.10.000036
ORF1ab/nsp3723P723SCctTct22B.1.1.2650.006309
ORF1ab/nsp3723P723LcCtcTt22B.1.1.2790.002242
ORF1ab/nsp3723P723TCctAct22B.1.1.4340.000697
ORF1ab/nsp3723P723del2cCTc--12B.1.1.70.000001
ORF1ab/nsp3723P723del2CCt--t12B.1.1.70.000001
ORF1ab/nsp3723P723del1Cct-ct12B.1.1.70.000001
ORF1ab/nsp3723P723del1ccTcc-12B.1.1.70.000001
ORF1ab/nsp3723P723SCctTct22B.1.177.150.001262
ORF1ab/nsp3723P723PccTccA22B.1.177.690.002967
ORF1ab/nsp3723P723SCctTct22B.1.1920.018519
ORF1ab/nsp3723P723PccTccC22B.1.2180.010309
ORF1ab/nsp3723P723SCctTct22B.1.2390.002442
ORF1ab/nsp3723P723SCctTct22B.1.2580.000133
ORF1ab/nsp3723P723SCctTct22B.1.258.220.005333
ORF1ab/nsp3723P723SCctTct22B.1.3050.004301
ORF1ab/nsp3723P723SCctTct22B.1.3560.003454
ORF1ab/nsp3723P723delCCT---22B.1.360.000292
ORF1ab/nsp3723P723PccTccC22B.1.4290.000047
ORF1ab/nsp3723P723LcCtcTt22B.1.4290.000047
ORF1ab/nsp3723P723SCctTct22B.1.5170.000854
ORF1ab/nsp3723P723delCCT---22B.1.6190.001742
ORF1ab/nsp3723P723del1Cct-ct22B.1.6270.00404
ORF1ab/nsp3723P723PccTccA12B.1.6370.000073
ORF1ab/nsp3723P723PccTccC12B.1.6370.000073
ORF1ab/nsp3723P723delCCT---22P.10.000032
ORF1ab/nsp3723P723LcCtcTt22Q.10.000253
ORF1ab/nsp3723P723PccTccA22Q.80.00033
ORF1ab/nsp3723P723delCCT---11A0.000387
ORF1ab/nsp3723P723ACctGct11A0.000387
ORF1ab/nsp3723P723SCctTct11A.10.000282
ORF1ab/nsp3723P723SCctTct11A.20.000662
ORF1ab/nsp3723P723delCCT---11A.2.20.001689
ORF1ab/nsp3723P723SCctTct11A.23.10.000704
ORF1ab/nsp3723P723CCCtTGt11All0
ORF1ab/nsp3723P723QcCTcAG11All0
ORF1ab/nsp3723P723NCCtAAt11All0
ORF1ab/nsp3723P723LcCtcTt11AY.10.000396
ORF1ab/nsp3723P723NCCtAAt11AY.1000.000046
ORF1ab/nsp3723P723PccTccC11AY.1060.000335
ORF1ab/nsp3723P723LcCtcTt11AY.1060.000335
ORF1ab/nsp3723P723SCctTct11AY.1100.000113
ORF1ab/nsp3723P723PccTccC11AY.1140.000231
ORF1ab/nsp3723P723LcCtcTt11AY.1180.000063
ORF1ab/nsp3723P723SCctTct11AY.120.000316
ORF1ab/nsp3723P723LcCtcTt11AY.1200.000037
ORF1ab/nsp3723P723del1ccTcc-11AY.1200.000037
ORF1ab/nsp3723P723LcCtcTt11AY.120.10.000321
ORF1ab/nsp3723P723SCctTct11AY.120.2.10.000498
ORF1ab/nsp3723P723SCctTct11AY.1210.000135
ORF1ab/nsp3723P723PccTccC11AY.130.000161
ORF1ab/nsp3723P723LcCtcTt11AY.130.000161
ORF1ab/nsp3723P723delCCT---11AY.130.000161
ORF1ab/nsp3723P723SCctTct11AY.160.00038
ORF1ab/nsp3723P723delCCT---11AY.20.000356
ORF1ab/nsp3723P723LcCtcTt11AY.200.000039
ORF1ab/nsp3723P723HcCtcAt11AY.200.000039
ORF1ab/nsp3723P723PccTccC11AY.230.00007
ORF1ab/nsp3723P723SCctTct11AY.230.00007
ORF1ab/nsp3723P723LcCtcTt11AY.290.000016
ORF1ab/nsp3723P723PccTccC11AY.30.00001
ORF1ab/nsp3723P723LcCtcTt11AY.3.10.000085
ORF1ab/nsp3723P723PccTccC11AY.300.000396
ORF1ab/nsp3723P723LcCtcTt11AY.330.000067
ORF1ab/nsp3723P723PccTccC11AY.340.000097
ORF1ab/nsp3723P723LcCtcTt11AY.350.000233
ORF1ab/nsp3723P723SCctTct11AY.360.000148
ORF1ab/nsp3723P723PccTccC11AY.360.000148
ORF1ab/nsp3723P723LcCtcTt11AY.390.000025
ORF1ab/nsp3723P723LcCtcTt11AY.39.1.10.000725
ORF1ab/nsp3723P723ACctGct11AY.40.000002
ORF1ab/nsp3723P723PccTccC11AY.4.20.000022
ORF1ab/nsp3723P723SCctTct11AY.4.2.10.000149
ORF1ab/nsp3723P723LcCtcTt11AY.4.2.10.000149
ORF1ab/nsp3723P723PccTccC11AY.4.30.000842
ORF1ab/nsp3723P723delCCT---11AY.4.50.000107
ORF1ab/nsp3723P723SCctTct11AY.4.50.000107
ORF1ab/nsp3723P723PccTccC11AY.4.50.000107
ORF1ab/nsp3723P723PccTccC11AY.410.000294
ORF1ab/nsp3723P723HcCTcAC11AY.430.000004
ORF1ab/nsp3723P723ACctGct11AY.430.000004
ORF1ab/nsp3723P723del2CCt--t11AY.430.000004
ORF1ab/nsp3723P723HcCtcAt11AY.440.000006
ORF1ab/nsp3723P723SCctTct11AY.450.000122
ORF1ab/nsp3723P723PccTccC11AY.460.000104
ORF1ab/nsp3723P723SCctTct11AY.46.20.000635
ORF1ab/nsp3723P723SCctTct11AY.46.40.000165
ORF1ab/nsp3723P723SCctTct11AY.46.50.000198
ORF1ab/nsp3723P723SCctTct11AY.470.000031
ORF1ab/nsp3723P723SCctTct11AY.50.000021
ORF1ab/nsp3723P723TCctAct11AY.50.000021
ORF1ab/nsp3723P723SCctTct11AY.5.10.003759
ORF1ab/nsp3723P723delCCT---11AY.5.30.000337
ORF1ab/nsp3723P723LcCtcTt11AY.5.40.000277
ORF1ab/nsp3723P723PccTccC11AY.5.40.000277
ORF1ab/nsp3723P723LcCtcTt11AY.540.000095
ORF1ab/nsp3723P723LcCtcTt11AY.550.000917
ORF1ab/nsp3723P723PccTccC11AY.60.000041
ORF1ab/nsp3723P723LcCtcTt11AY.60.000041
ORF1ab/nsp3723P723CCCtTGt11AY.670.000464
ORF1ab/nsp3723P723delCCT---11AY.670.000464
ORF1ab/nsp3723P723PccTccC11AY.70.000196
ORF1ab/nsp3723P723SCctTct11AY.740.000116
ORF1ab/nsp3723P723SCctTct11AY.75.10.00018
ORF1ab/nsp3723P723PccTccC11AY.780.001541
ORF1ab/nsp3723P723SCctTct11AY.790.001211
ORF1ab/nsp3723P723delCCT---11AY.810.001992
ORF1ab/nsp3723P723del1Cct-ct11AY.820.001357
ORF1ab/nsp3723P723PccTccA11AY.840.000437
ORF1ab/nsp3723P723SCctTct11AY.870.000833
ORF1ab/nsp3723P723LcCtcTt11AY.880.000884
ORF1ab/nsp3723P723PccTccC11AY.90.000068
ORF1ab/nsp3723P723SCctTct11AY.9.10.000084
ORF1ab/nsp3723P723LcCtcTt11AY.910.00073
ORF1ab/nsp3723P723SCctTct11AY.920.000287
ORF1ab/nsp3723P723delCCT---11AY.940.000443
ORF1ab/nsp3723P723PccTccC11AY.960.002075
ORF1ab/nsp3723P723PccTccA11AY.980.000079
ORF1ab/nsp3723P723SCctTct11AY.98.10.000048
ORF1ab/nsp3723P723delCCT---11AY.990.001049
ORF1ab/nsp3723P723delCCT---11AY.99.20.000092
ORF1ab/nsp3723P723SCctTct11AY.99.20.000092
ORF1ab/nsp3723P723ACctGct11B.10.000009
ORF1ab/nsp3723P723TCctAct11B.10.000009
ORF1ab/nsp3723P723PccTccC11B.1.1.1350.004695
ORF1ab/nsp3723P723delCCT---11B.1.1.1390.022727
ORF1ab/nsp3723P723delCCT---11B.1.1.1420.017544
ORF1ab/nsp3723P723TCctAct11B.1.1.1530.001095
ORF1ab/nsp3723P723SCctTct11B.1.1.1860.003436
ORF1ab/nsp3723P723SCctTct11B.1.1.2160.00089
ORF1ab/nsp3723P723PccTccC11B.1.1.2220.000204
ORF1ab/nsp3723P723SCctTct11B.1.1.2220.000204
ORF1ab/nsp3723P723SCctTct11B.1.1.250.000569
ORF1ab/nsp3723P723PccTccC11B.1.1.2630.001558
ORF1ab/nsp3723P723PccTccC11B.1.1.2740.005051
ORF1ab/nsp3723P723LcCtcTt11B.1.1.280.000311
ORF1ab/nsp3723P723SCctTct11B.1.1.280.000311
ORF1ab/nsp3723P723PccTccG11B.1.1.280.000311
ORF1ab/nsp3723P723LcCtcTt11B.1.1.2890.002083
ORF1ab/nsp3723P723SCctTct11B.1.1.3110.000358
ORF1ab/nsp3723P723PccTccC11B.1.1.3170.000412
ORF1ab/nsp3723P723ACctGct11B.1.1.3170.000412
ORF1ab/nsp3723P723SCctTct11B.1.1.3260.001761
ORF1ab/nsp3723P723PccTccA11B.1.1.3370.003597
ORF1ab/nsp3723P723SCctTct11B.1.1.3370.003597
ORF1ab/nsp3723P723SCctTct11B.1.1.370.000193
ORF1ab/nsp3723P723SCctTct11B.1.1.3850.004464
ORF1ab/nsp3723P723SCctTct11B.1.1.390.00051
ORF1ab/nsp3723P723PccTccC11B.1.1.390.00051
ORF1ab/nsp3723P723delCCT---11B.1.1.4090.002833
ORF1ab/nsp3723P723LcCtcTt11B.1.1.4190.007407
ORF1ab/nsp3723P723PccTccC11B.1.1.4340.000349
ORF1ab/nsp3723P723SCctTct11B.1.1.510.001718
ORF1ab/nsp3723P723SCctTct11B.1.1.5190.00004
ORF1ab/nsp3723P723LcCtcTt11B.1.1.5190.00004
ORF1ab/nsp3723P723RcCtcGt11B.1.1.70.000001
ORF1ab/nsp3723P723SCctTct11B.1.1040.00369
ORF1ab/nsp3723P723SCctTct11B.1.1280.000635
ORF1ab/nsp3723P723delCCT---11B.1.1490.003425
ORF1ab/nsp3723P723TCctAct11B.1.1570.002985
ORF1ab/nsp3723P723delCCT---11B.1.1570.002985
ORF1ab/nsp3723P723delCCT---11B.1.1600.000031
ORF1ab/nsp3723P723TCctAct11B.1.1600.000031
ORF1ab/nsp3723P723SCctTct11B.1.160.160.000929
ORF1ab/nsp3723P723HcCtcAt11B.1.1770.000013
ORF1ab/nsp3723P723SCctTct11B.1.177.110.001698
ORF1ab/nsp3723P723SCctTct11B.1.177.120.000152
ORF1ab/nsp3723P723delCCT---11B.1.177.160.000664
ORF1ab/nsp3723P723LcCtcTt11B.1.177.160.000664
ORF1ab/nsp3723P723delCCT---11B.1.177.170.000821
ORF1ab/nsp3723P723SCctTct11B.1.177.210.000076
ORF1ab/nsp3723P723PccTccC11B.1.177.350.000691
ORF1ab/nsp3723P723LcCtcTt11B.1.177.40.000211
ORF1ab/nsp3723P723SCctTct11B.1.177.40.000211
ORF1ab/nsp3723P723LcCtcTt11B.1.177.410.0025
ORF1ab/nsp3723P723delCCT---11B.1.177.500.004695
ORF1ab/nsp3723P723SCctTct11B.1.177.510.004566
ORF1ab/nsp3723P723SCctTct11B.1.177.520.001757
ORF1ab/nsp3723P723del1ccTcc-11B.1.177.540.000606
ORF1ab/nsp3723P723SCctTct11B.1.177.580.001332
ORF1ab/nsp3723P723SCctTct11B.1.177.600.000218
ORF1ab/nsp3723P723delCCT---11B.1.177.630.002703
ORF1ab/nsp3723P723SCctTct11B.1.177.690.001484
ORF1ab/nsp3723P723SCctTct11B.1.177.70.000165
ORF1ab/nsp3723P723delCCT---11B.1.177.70.000165
ORF1ab/nsp3723P723SCctTct11B.1.177.770.000726
ORF1ab/nsp3723P723SCctTct11B.1.177.830.001481
ORF1ab/nsp3723P723delCCT---11B.1.177.870.000728
ORF1ab/nsp3723P723LcCtcTt11B.1.1820.007246
ORF1ab/nsp3723P723delCCT---11B.1.20.000009
ORF1ab/nsp3723P723LcCtcTt11B.1.2210.000071
ORF1ab/nsp3723P723LcCtcTt11B.1.2320.000537
ORF1ab/nsp3723P723LcCtcTt11B.1.2340.000132
ORF1ab/nsp3723P723LcCtcTt11B.1.2390.001221
ORF1ab/nsp3723P723delCCT---11B.1.2430.00007
ORF1ab/nsp3723P723LcCtcTt11B.1.2430.00007
ORF1ab/nsp3723P723TCctAct11B.1.258.170.000104
ORF1ab/nsp3723P723SCctTct11B.1.258.30.001675
ORF1ab/nsp3723P723SCctTct11B.1.2650.001271
ORF1ab/nsp3723P723LcCtcTt11B.1.3110.000275
ORF1ab/nsp3723P723delCCT---11B.1.3190.003049
ORF1ab/nsp3723P723PccTccC11B.1.3460.001311
ORF1ab/nsp3723P723SCctTct11B.1.3500.002933
ORF1ab/nsp3723P723LcCtcTt11B.1.3510.00003
ORF1ab/nsp3723P723SCctTct11B.1.36.100.004785
ORF1ab/nsp3723P723LcCtcTt11B.1.36.170.000494
ORF1ab/nsp3723P723SCctTct11B.1.36.190.009259
ORF1ab/nsp3723P723PccTccC11B.1.36.220.001208
ORF1ab/nsp3723P723SCctTct11B.1.36.290.000517
ORF1ab/nsp3723P723SCctTct11B.1.36.310.001751
ORF1ab/nsp3723P723LcCtcTt11B.1.3690.000285
ORF1ab/nsp3723P723SCctTct11B.1.3690.000285
ORF1ab/nsp3723P723LcCtcTt11B.1.4000.000429
ORF1ab/nsp3723P723del1ccTcc-11B.1.4090.000781
ORF1ab/nsp3723P723HcCTcAC11B.1.4150.014286
ORF1ab/nsp3723P723SCctTct11B.1.4220.000812
ORF1ab/nsp3723P723SCctTct11B.1.4260.001009
ORF1ab/nsp3723P723LcCtcTt11B.1.4270.00005
ORF1ab/nsp3723P723PccTccC11B.1.4270.00005
ORF1ab/nsp3723P723LcCtcTt11B.1.438.10.000107
ORF1ab/nsp3723P723SCctTct11B.1.4520.013699
ORF1ab/nsp3723P723LcCtcTt11B.1.4530.003236
ORF1ab/nsp3723P723SCctTct11B.1.466.20.000391
ORF1ab/nsp3723P723TCctAct11B.1.5170.000427
ORF1ab/nsp3723P723SCctTct11B.1.5230.002451
ORF1ab/nsp3723P723LcCtcTt11B.1.5250.000113
ORF1ab/nsp3723P723SCctTct11B.1.5600.00463
ORF1ab/nsp3723P723SCctTct11B.1.5650.00081
ORF1ab/nsp3723P723SCctTct11B.1.575.10.002439
ORF1ab/nsp3723P723LcCtcTt11B.1.5760.000907
ORF1ab/nsp3723P723SCctTct11B.1.5800.004065
ORF1ab/nsp3723P723LcCtcTt11B.1.5820.000491
ORF1ab/nsp3723P723LcCtcTt11B.1.5950.000261
ORF1ab/nsp3723P723del1Cct-ct11B.1.5950.000261
ORF1ab/nsp3723P723PccTccC11B.1.5960.000087
ORF1ab/nsp3723P723SCctTct11B.1.6100.003546
ORF1ab/nsp3723P723delCCT---11B.1.617.10.000129
ORF1ab/nsp3723P723LcCtcTt11B.1.617.10.000129
ORF1ab/nsp3723P723HcCtcAt11B.1.617.20.000004
ORF1ab/nsp3723P723QcCTcAG11B.1.619.10.000641
ORF1ab/nsp3723P723PccTccC11B.1.6210.000089
ORF1ab/nsp3723P723SCctTct11B.1.80.001972
ORF1ab/nsp3723P723SCctTct11B.1.930.000934
ORF1ab/nsp3723P723delCCT---11B.150.017544
ORF1ab/nsp3723P723PccTccC11B.280.003279
ORF1ab/nsp3723P723LcCtcTt11B.30.000831
ORF1ab/nsp3723P723PccTccA11B.3.10.001658
ORF1ab/nsp3723P723delCCT---11B.340.013699
ORF1ab/nsp3723P723SCctTct11B.400.000364
ORF1ab/nsp3723P723TCctAct11B.6.60.000889
ORF1ab/nsp3723P723SCctTct11C.10.002392
ORF1ab/nsp3723P723SCctTct11C.370.000116
ORF1ab/nsp3723P723PccTccC11C.370.000116
ORF1ab/nsp3723P723TCctAct11P.10.000016
ORF1ab/nsp3723P723delCCT---11P.1.10.000318
ORF1ab/nsp3723P723SCctTct11P.1.120.000484
ORF1ab/nsp3723P723LcCtcTt11P.1.170.000162
ORF1ab/nsp3723P723PccTccC11P.1.70.000319
ORF1ab/nsp3723P723SCctTct11P.1.90.004808
ORF1ab/nsp3723P723SCctTct11Q.30.000145
ORF1ab/nsp3723P723SCctTct11Q.80.000165
ORF1ab/nsp3723P723LcCtcTt11R.10.00009
ORF1ab/nsp3723P723PccTccC11R.10.00009
ORF1ab/nsp3723P723SCctTct11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.