CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 720 | T720I | T1538I | nonsyn | aCt | aTt | 14971 | 14971 | 1 | 4877-4879 |
ORF1ab/nsp3 | 720 | T720N | T1538N | nonsyn | aCt | aAt | 335 | 335 | 1 | 4877-4879 |
ORF1ab/nsp3 | 720 | T720T | T1538T | syn | acT | acG | 110 | 58 | 0.527273 | 4877-4879 |
ORF1ab/nsp3 | 720 | T720T | T1538T | syn | acT | acC | 110 | 46 | 0.418182 | 4877-4879 |
ORF1ab/nsp3 | 720 | T720T | T1538T | syn | acT | acA | 110 | 6 | 0.0545455 | 4877-4879 |
ORF1ab/nsp3 | 720 | T720del | T1538del | del | ACT | --- | 94 | 94 | 1 | 4877-4879 |
ORF1ab/nsp3 | 720 | T720A | T1538A | nonsyn | Act | Gct | 16 | 16 | 1 | 4877-4879 |
ORF1ab/nsp3 | 720 | T720S | T1538S | nonsyn | Act | Tct | 10 | 5 | 0.5 | 4877-4879 |
ORF1ab/nsp3 | 720 | T720S | T1538S | nonsyn | AcT | TcC | 10 | 2 | 0.2 | 4877-4879 |
ORF1ab/nsp3 | 720 | T720S | T1538S | nonsyn | aCt | aGt | 10 | 2 | 0.2 | 4877-4879 |
ORF1ab/nsp3 | 720 | T720S | T1538S | nonsyn | aCT | aGC | 10 | 1 | 0.1 | 4877-4879 |
ORF1ab/nsp3 | 720 | T720L | T1538L | nonsyn | ACt | CTt | 3 | 3 | 1 | 4877-4879 |
ORF1ab/nsp3 | 720 | T720P | T1538P | nonsyn | Act | Cct | 1 | 1 | 1 | 4877-4879 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 14971 | 14971 | All | 0.002863 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 11151 | 11151 | B.1.621 | 0.987076 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1960 | 1960 | B.1.621.1 | 0.991401 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 335 | 335 | All | 0.000064 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 202 | 202 | B.1.1 | 0.003664 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 164 | 164 | AY.39 | 0.004053 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 149 | 149 | B.1 | 0.001365 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 137 | 137 | B.1.1.7 | 0.000123 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 132 | 132 | B.1.617.2 | 0.000497 |
ORF1ab/nsp3 | 720 | T720T | acT | acG | 58 | 110 | All | 0.000011 |
ORF1ab/nsp3 | 720 | T720T | acT | acC | 46 | 110 | All | 0.000009 |
ORF1ab/nsp3 | 720 | T720T | acT | acA | 6 | 110 | All | 0.000001 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 106 | 106 | AY.4 | 0.000165 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 102 | 102 | R.1 | 0.009181 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 95 | 95 | AY.16.1 | 0.044643 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 94 | 94 | All | 0.000018 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 88 | 88 | B.1.435 | 1 |
ORF1ab/nsp3 | 720 | T720T | acT | acG | 58 | 78 | B.1.1.7 | 0.000052 |
ORF1ab/nsp3 | 720 | T720T | acT | acC | 17 | 78 | B.1.1.7 | 0.000015 |
ORF1ab/nsp3 | 720 | T720T | acT | acA | 3 | 78 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 77 | 77 | B.1.617.2 | 0.00029 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 73 | 73 | AY.103 | 0.000453 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 55 | 55 | B.1.110.3 | 0.039511 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 45 | 45 | AY.25 | 0.000271 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 44 | 44 | AY.33 | 0.002938 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 33 | 33 | B.1.1.7 | 0.00003 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 32 | 32 | B.1.1.258 | 0.104235 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 32 | 32 | B.1.177 | 0.000421 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 31 | 31 | AY.3 | 0.000308 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 29 | 29 | AY.43 | 0.000128 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 28 | 28 | AY.44 | 0.00017 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 25 | 25 | B.1.427 | 0.001262 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 23 | 23 | B.1 | 0.000211 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 23 | 23 | P.1 | 0.000362 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 22 | 22 | B.1.177.7 | 0.003627 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 20 | 20 | B.1.623 | 0.01073 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 19 | 19 | B.1.1.368 | 0.058642 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 18 | 18 | B.1.568 | 0.02 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 17 | 17 | B.1.2 | 0.00015 |
ORF1ab/nsp3 | 720 | T720A | Act | Gct | 16 | 16 | All | 0.000003 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 15 | 15 | AY.13 | 0.002415 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 720 | T720T | acT | acC | 15 | 15 | B.1.628 | 0.005285 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 14 | 14 | AY.120 | 0.000521 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 13 | 13 | AY.29 | 0.000205 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 12 | 12 | AY.42 | 0.000483 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 12 | 12 | B.1.1.189 | 0.018154 |
ORF1ab/nsp3 | 720 | T720S | Act | Tct | 5 | 10 | All | 0.000001 |
ORF1ab/nsp3 | 720 | T720S | AcT | TcC | 2 | 10 | All | 0 |
ORF1ab/nsp3 | 720 | T720S | aCt | aGt | 2 | 10 | All | 0 |
ORF1ab/nsp3 | 720 | T720S | aCT | aGC | 1 | 10 | All | 0 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 10 | 10 | AY.26 | 0.000283 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 8 | 8 | B.1.351 | 0.000238 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 8 | 8 | B.1.9.4 | 0.04908 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 8 | 8 | P.1.14 | 0.000382 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 7 | 7 | AY.113 | 0.000997 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 7 | 7 | AY.120 | 0.00026 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 7 | 7 | B.1.1.306 | 0.003069 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 7 | 7 | B.1.526 | 0.000165 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 7 | 7 | P.2 | 0.001306 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 6 | 6 | AY.36 | 0.000889 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 6 | 6 | B.1.160 | 0.000187 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 6 | 6 | B.1.177.83 | 0.008889 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp3 | 720 | T720T | acT | acC | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 720 | T720S | Act | Tct | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 720 | T720S | AcT | TcC | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 4 | 4 | AY.35 | 0.000932 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 4 | 4 | AY.65 | 0.002132 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 4 | 4 | B.1.1.216 | 0.003562 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 4 | 4 | B.1.1.318 | 0.001207 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 4 | 4 | B.1.177.73 | 0.002265 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp3 | 720 | T720L | ACt | CTt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 3 | 3 | AY.37 | 0.000948 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 3 | 3 | B | 0.000383 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 3 | 3 | B.1.1.50 | 0.002037 |
ORF1ab/nsp3 | 720 | T720A | Act | Gct | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 3 | 3 | B.1.533 | 0.028846 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 3 | 3 | B.1.577 | 0.002062 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp3 | 720 | T720A | Act | Gct | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp3 | 720 | T720S | aCt | aGt | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 720 | T720S | Act | Tct | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 720 | T720A | Act | Gct | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 2 | 2 | B.1.1.277 | 0.001517 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp3 | 720 | T720A | Act | Gct | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp3 | 720 | T720A | Act | Gct | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 2 | 2 | B.1.329 | 0.001215 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 2 | 2 | B.1.408 | 0.00738 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 2 | 2 | B.1.503 | 0.004975 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp3 | 720 | T720T | acT | acC | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 2 | 2 | B.1.619 | 0.001742 |
ORF1ab/nsp3 | 720 | T720L | ACt | CTt | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 2 | 2 | Q.7 | 0.002222 |
ORF1ab/nsp3 | 720 | T720T | acT | acC | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 720 | T720P | Act | Cct | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 720 | T720T | acT | acC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 720 | T720A | Act | Gct | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 720 | T720T | acT | acC | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 720 | T720A | Act | Gct | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 720 | T720S | aCT | aGC | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 720 | T720A | Act | Gct | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 720 | T720T | acT | acC | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.1.118 | 0.010204 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.1.128 | 0.007092 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 720 | T720S | Act | Tct | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 720 | T720P | Act | Cct | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.1.282 | 0.011628 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.1.431 | 0.016129 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.1.442 | 0.018519 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.1.99 | 0.02381 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.160.22 | 0.006757 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.160.33 | 0.004425 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 720 | T720T | acT | acC | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp3 | 720 | T720S | aCt | aGt | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 720 | T720T | acT | acA | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 720 | T720L | ACt | CTt | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp3 | 720 | T720T | acT | acC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.36.12 | 0.009615 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 720 | T720T | acT | acA | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.466.1 | 0.007194 |
ORF1ab/nsp3 | 720 | T720T | acT | acA | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 720 | T720T | acT | acC | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.550 | 0.013699 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.570 | 0.002941 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.633 | 0.041667 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.638 | 0.052632 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.1.88.1 | 0.004808 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp3 | 720 | T720S | Act | Tct | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp3 | 720 | T720N | aCt | aAt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 720 | T720T | acT | acC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 720 | T720del | ACT | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 720 | T720I | aCt | aTt | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 720 | T720A | Act | Gct | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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