CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 720

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3720T720IT1538InonsynaCtaTt149711497114877-4879
ORF1ab/nsp3720T720NT1538NnonsynaCtaAt33533514877-4879
ORF1ab/nsp3720T720TT1538TsynacTacG110580.5272734877-4879
ORF1ab/nsp3720T720TT1538TsynacTacC110460.4181824877-4879
ORF1ab/nsp3720T720TT1538TsynacTacA11060.05454554877-4879
ORF1ab/nsp3720T720delT1538deldelACT---949414877-4879
ORF1ab/nsp3720T720AT1538AnonsynActGct161614877-4879
ORF1ab/nsp3720T720ST1538SnonsynActTct1050.54877-4879
ORF1ab/nsp3720T720ST1538SnonsynAcTTcC1020.24877-4879
ORF1ab/nsp3720T720ST1538SnonsynaCtaGt1020.24877-4879
ORF1ab/nsp3720T720ST1538SnonsynaCTaGC1010.14877-4879
ORF1ab/nsp3720T720LT1538LnonsynACtCTt3314877-4879
ORF1ab/nsp3720T720PT1538PnonsynActCct1114877-4879

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3720T720IaCtaTt1497114971All0.002863
ORF1ab/nsp3720T720IaCtaTt1115111151B.1.6210.987076
ORF1ab/nsp3720T720IaCtaTt19601960B.1.621.10.991401
ORF1ab/nsp3720T720NaCtaAt335335All0.000064
ORF1ab/nsp3720T720IaCtaTt202202B.1.10.003664
ORF1ab/nsp3720T720IaCtaTt164164AY.390.004053
ORF1ab/nsp3720T720IaCtaTt149149B.10.001365
ORF1ab/nsp3720T720IaCtaTt137137B.1.1.70.000123
ORF1ab/nsp3720T720NaCtaAt132132B.1.617.20.000497
ORF1ab/nsp3720T720TacTacG58110All0.000011
ORF1ab/nsp3720T720TacTacC46110All0.000009
ORF1ab/nsp3720T720TacTacA6110All0.000001
ORF1ab/nsp3720T720IaCtaTt106106AY.40.000165
ORF1ab/nsp3720T720IaCtaTt102102R.10.009181
ORF1ab/nsp3720T720NaCtaAt9595AY.16.10.044643
ORF1ab/nsp3720T720delACT---9494All0.000018
ORF1ab/nsp3720T720IaCtaTt8888B.1.4351
ORF1ab/nsp3720T720TacTacG5878B.1.1.70.000052
ORF1ab/nsp3720T720TacTacC1778B.1.1.70.000015
ORF1ab/nsp3720T720TacTacA378B.1.1.70.000003
ORF1ab/nsp3720T720IaCtaTt7777B.1.617.20.00029
ORF1ab/nsp3720T720IaCtaTt7373AY.1030.000453
ORF1ab/nsp3720T720IaCtaTt5555B.1.110.30.039511
ORF1ab/nsp3720T720IaCtaTt4545AY.250.000271
ORF1ab/nsp3720T720IaCtaTt4444AY.330.002938
ORF1ab/nsp3720T720delACT---3333B.1.1.70.00003
ORF1ab/nsp3720T720IaCtaTt3232B.1.1.2580.104235
ORF1ab/nsp3720T720IaCtaTt3232B.1.1770.000421
ORF1ab/nsp3720T720IaCtaTt3131AY.30.000308
ORF1ab/nsp3720T720IaCtaTt2929AY.430.000128
ORF1ab/nsp3720T720IaCtaTt2828AY.440.00017
ORF1ab/nsp3720T720IaCtaTt2525B.1.4270.001262
ORF1ab/nsp3720T720NaCtaAt2323B.10.000211
ORF1ab/nsp3720T720IaCtaTt2323P.10.000362
ORF1ab/nsp3720T720IaCtaTt2222B.1.177.70.003627
ORF1ab/nsp3720T720IaCtaTt2020B.1.6230.01073
ORF1ab/nsp3720T720IaCtaTt1919B.1.1.3680.058642
ORF1ab/nsp3720T720IaCtaTt1818B.1.5680.02
ORF1ab/nsp3720T720IaCtaTt1717B.1.20.00015
ORF1ab/nsp3720T720AActGct1616All0.000003
ORF1ab/nsp3720T720IaCtaTt1515AY.130.002415
ORF1ab/nsp3720T720NaCtaAt1515B.1.1.70.000013
ORF1ab/nsp3720T720TacTacC1515B.1.6280.005285
ORF1ab/nsp3720T720IaCtaTt1414AY.1200.000521
ORF1ab/nsp3720T720IaCtaTt1313AY.290.000205
ORF1ab/nsp3720T720IaCtaTt1212AY.420.000483
ORF1ab/nsp3720T720IaCtaTt1212B.1.1.1890.018154
ORF1ab/nsp3720T720SActTct510All0.000001
ORF1ab/nsp3720T720SAcTTcC210All0
ORF1ab/nsp3720T720SaCtaGt210All0
ORF1ab/nsp3720T720SaCTaGC110All0
ORF1ab/nsp3720T720NaCtaAt1010AY.260.000283
ORF1ab/nsp3720T720IaCtaTt88B.1.3510.000238
ORF1ab/nsp3720T720IaCtaTt88B.1.9.40.04908
ORF1ab/nsp3720T720IaCtaTt88P.1.140.000382
ORF1ab/nsp3720T720IaCtaTt77AY.1130.000997
ORF1ab/nsp3720T720NaCtaAt77AY.1200.00026
ORF1ab/nsp3720T720NaCtaAt77AY.250.000042
ORF1ab/nsp3720T720IaCtaTt77B.1.1.3060.003069
ORF1ab/nsp3720T720IaCtaTt77B.1.5260.000165
ORF1ab/nsp3720T720IaCtaTt77P.20.001306
ORF1ab/nsp3720T720IaCtaTt66AY.360.000889
ORF1ab/nsp3720T720IaCtaTt66AY.4.20.00013
ORF1ab/nsp3720T720IaCtaTt66B.1.1600.000187
ORF1ab/nsp3720T720delACT---66B.1.1770.000079
ORF1ab/nsp3720T720NaCtaAt66B.1.177.830.008889
ORF1ab/nsp3720T720IaCtaTt55AY.1020.000133
ORF1ab/nsp3720T720delACT---55AY.430.000022
ORF1ab/nsp3720T720IaCtaTt55AY.75.10.000902
ORF1ab/nsp3720T720TacTacC440.222222
ORF1ab/nsp3720T720SActTct240.111111
ORF1ab/nsp3720T720SAcTTcC240.111111
ORF1ab/nsp3720T720IaCtaTt44AY.3.10.000341
ORF1ab/nsp3720T720NaCtaAt44AY.350.000932
ORF1ab/nsp3720T720NaCtaAt44AY.40.000006
ORF1ab/nsp3720T720IaCtaTt44AY.650.002132
ORF1ab/nsp3720T720IaCtaTt44AY.9.20.000147
ORF1ab/nsp3720T720IaCtaTt44B.1.1.2160.003562
ORF1ab/nsp3720T720IaCtaTt44B.1.1.3180.001207
ORF1ab/nsp3720T720IaCtaTt44B.1.177.730.002265
ORF1ab/nsp3720T720IaCtaTt44B.1.4290.000094
ORF1ab/nsp3720T720LACtCTt33All0.000001
ORF1ab/nsp3720T720IaCtaTt33AY.1170.000254
ORF1ab/nsp3720T720NaCtaAt33AY.370.000948
ORF1ab/nsp3720T720NaCtaAt33AY.440.000018
ORF1ab/nsp3720T720NaCtaAt33AY.46.60.000217
ORF1ab/nsp3720T720IaCtaTt33AY.470.000093
ORF1ab/nsp3720T720IaCtaTt33B0.000383
ORF1ab/nsp3720T720delACT---33B.1.10.000054
ORF1ab/nsp3720T720IaCtaTt33B.1.1.500.002037
ORF1ab/nsp3720T720AActGct33B.1.1.70.000003
ORF1ab/nsp3720T720IaCtaTt33B.1.2210.000213
ORF1ab/nsp3720T720IaCtaTt33B.1.2400.000647
ORF1ab/nsp3720T720NaCtaAt33B.1.2580.0002
ORF1ab/nsp3720T720IaCtaTt33B.1.5330.028846
ORF1ab/nsp3720T720IaCtaTt33B.1.5770.002062
ORF1ab/nsp3720T720IaCtaTt33C.370.000348
ORF1ab/nsp3720T720IaCtaTt33D.20.000225
ORF1ab/nsp3720T720AActGct33P.10.000047
ORF1ab/nsp3720T720IaCtaTt33P.1.150.000697
ORF1ab/nsp3720T720delACT---220.111111
ORF1ab/nsp3720T720NaCtaAt22AY.1080.002205
ORF1ab/nsp3720T720IaCtaTt22AY.1190.000071
ORF1ab/nsp3720T720IaCtaTt22AY.140.000176
ORF1ab/nsp3720T720NaCtaAt22AY.230.000139
ORF1ab/nsp3720T720IaCtaTt22AY.260.000057
ORF1ab/nsp3720T720delACT---22AY.30.00002
ORF1ab/nsp3720T720IaCtaTt22AY.39.10.000079
ORF1ab/nsp3720T720delACT---22AY.40.000003
ORF1ab/nsp3720T720delACT---22AY.4.20.000043
ORF1ab/nsp3720T720NaCtaAt22AY.430.000009
ORF1ab/nsp3720T720delACT---22AY.440.000012
ORF1ab/nsp3720T720IaCtaTt22AY.46.60.000144
ORF1ab/nsp3720T720NaCtaAt22AY.480.00093
ORF1ab/nsp3720T720IaCtaTt22AY.540.000191
ORF1ab/nsp3720T720IaCtaTt22AY.680.000547
ORF1ab/nsp3720T720IaCtaTt22AZ.20.001642
ORF1ab/nsp3720T720SaCtaGt12B.10.000009
ORF1ab/nsp3720T720SActTct12B.10.000009
ORF1ab/nsp3720T720AActGct22B.1.10.000036
ORF1ab/nsp3720T720IaCtaTt22B.1.1.10.000653
ORF1ab/nsp3720T720IaCtaTt22B.1.1.2770.001517
ORF1ab/nsp3720T720IaCtaTt22B.1.1.3260.003521
ORF1ab/nsp3720T720AActGct22B.1.177.210.000153
ORF1ab/nsp3720T720IaCtaTt22B.1.177.440.001038
ORF1ab/nsp3720T720AActGct22B.1.177.810.000379
ORF1ab/nsp3720T720delACT---22B.1.20.000018
ORF1ab/nsp3720T720NaCtaAt22B.1.20.000018
ORF1ab/nsp3720T720IaCtaTt22B.1.3290.001215
ORF1ab/nsp3720T720delACT---22B.1.360.000292
ORF1ab/nsp3720T720IaCtaTt22B.1.4080.00738
ORF1ab/nsp3720T720NaCtaAt22B.1.4290.000047
ORF1ab/nsp3720T720IaCtaTt22B.1.5030.004975
ORF1ab/nsp3720T720IaCtaTt22B.1.5610.000794
ORF1ab/nsp3720T720TacTacC22B.1.617.20.000008
ORF1ab/nsp3720T720delACT---22B.1.617.20.000008
ORF1ab/nsp3720T720delACT---22B.1.6190.001742
ORF1ab/nsp3720T720LACtCTt22B.1.6210.000177
ORF1ab/nsp3720T720IaCtaTt22B.1.6370.000146
ORF1ab/nsp3720T720IaCtaTt22B.60.00182
ORF1ab/nsp3720T720delACT---22P.10.000032
ORF1ab/nsp3720T720IaCtaTt22P.1.170.000324
ORF1ab/nsp3720T720IaCtaTt22Q.70.002222
ORF1ab/nsp3720T720TacTacC11A.10.000282
ORF1ab/nsp3720T720delACT---11A.2.20.001689
ORF1ab/nsp3720T720PActCct11All0
ORF1ab/nsp3720T720delACT---11AY.10.000396
ORF1ab/nsp3720T720IaCtaTt11AY.1060.000335
ORF1ab/nsp3720T720IaCtaTt11AY.1100.000113
ORF1ab/nsp3720T720IaCtaTt11AY.1160.000287
ORF1ab/nsp3720T720IaCtaTt11AY.1180.000063
ORF1ab/nsp3720T720TacTacC11AY.1200.000037
ORF1ab/nsp3720T720IaCtaTt11AY.1210.000135
ORF1ab/nsp3720T720IaCtaTt11AY.230.00007
ORF1ab/nsp3720T720NaCtaAt11AY.240.000431
ORF1ab/nsp3720T720AActGct11AY.250.000006
ORF1ab/nsp3720T720delACT---11AY.250.000006
ORF1ab/nsp3720T720IaCtaTt11AY.270.000065
ORF1ab/nsp3720T720IaCtaTt11AY.300.000396
ORF1ab/nsp3720T720IaCtaTt11AY.340.000097
ORF1ab/nsp3720T720IaCtaTt11AY.34.10.00051
ORF1ab/nsp3720T720NaCtaAt11AY.390.000025
ORF1ab/nsp3720T720TacTacC11AY.40.000002
ORF1ab/nsp3720T720IaCtaTt11AY.4.10.000737
ORF1ab/nsp3720T720IaCtaTt11AY.4.30.000842
ORF1ab/nsp3720T720delACT---11AY.4.50.000107
ORF1ab/nsp3720T720AActGct11AY.440.000006
ORF1ab/nsp3720T720IaCtaTt11AY.50.000021
ORF1ab/nsp3720T720delACT---11AY.5.30.000337
ORF1ab/nsp3720T720NaCtaAt11AY.520.000814
ORF1ab/nsp3720T720delACT---11AY.670.000464
ORF1ab/nsp3720T720SaCTaGC11AY.670.000464
ORF1ab/nsp3720T720IaCtaTt11AY.7.10.000113
ORF1ab/nsp3720T720IaCtaTt11AY.730.000665
ORF1ab/nsp3720T720NaCtaAt11AY.780.001541
ORF1ab/nsp3720T720delACT---11AY.810.001992
ORF1ab/nsp3720T720IaCtaTt11AY.9.10.000084
ORF1ab/nsp3720T720delACT---11AY.940.000443
ORF1ab/nsp3720T720IaCtaTt11AY.980.000079
ORF1ab/nsp3720T720delACT---11AY.990.001049
ORF1ab/nsp3720T720AActGct11AY.99.20.000092
ORF1ab/nsp3720T720TacTacC11B.10.000009
ORF1ab/nsp3720T720delACT---11B.10.000009
ORF1ab/nsp3720T720IaCtaTt11B.1.1.1180.010204
ORF1ab/nsp3720T720IaCtaTt11B.1.1.1280.007092
ORF1ab/nsp3720T720delACT---11B.1.1.1390.022727
ORF1ab/nsp3720T720delACT---11B.1.1.1420.017544
ORF1ab/nsp3720T720SActTct11B.1.1.1740.003378
ORF1ab/nsp3720T720IaCtaTt11B.1.1.1980.001468
ORF1ab/nsp3720T720IaCtaTt11B.1.1.250.000569
ORF1ab/nsp3720T720PActCct11B.1.1.2530.002506
ORF1ab/nsp3720T720IaCtaTt11B.1.1.2820.011628
ORF1ab/nsp3720T720IaCtaTt11B.1.1.2910.000742
ORF1ab/nsp3720T720IaCtaTt11B.1.1.3710.010417
ORF1ab/nsp3720T720delACT---11B.1.1.4090.002833
ORF1ab/nsp3720T720IaCtaTt11B.1.1.4160.000905
ORF1ab/nsp3720T720IaCtaTt11B.1.1.4310.016129
ORF1ab/nsp3720T720IaCtaTt11B.1.1.4420.018519
ORF1ab/nsp3720T720IaCtaTt11B.1.1.5190.00004
ORF1ab/nsp3720T720IaCtaTt11B.1.1.990.02381
ORF1ab/nsp3720T720IaCtaTt11B.1.1470.000756
ORF1ab/nsp3720T720delACT---11B.1.1490.003425
ORF1ab/nsp3720T720delACT---11B.1.1570.002985
ORF1ab/nsp3720T720delACT---11B.1.1600.000031
ORF1ab/nsp3720T720IaCtaTt11B.1.160.220.006757
ORF1ab/nsp3720T720IaCtaTt11B.1.160.330.004425
ORF1ab/nsp3720T720IaCtaTt11B.1.177.100.000878
ORF1ab/nsp3720T720delACT---11B.1.177.160.000664
ORF1ab/nsp3720T720TacTacC11B.1.177.170.000821
ORF1ab/nsp3720T720NaCtaAt11B.1.177.230.003236
ORF1ab/nsp3720T720SaCtaGt11B.1.177.230.003236
ORF1ab/nsp3720T720IaCtaTt11B.1.177.330.001645
ORF1ab/nsp3720T720IaCtaTt11B.1.177.450.000381
ORF1ab/nsp3720T720delACT---11B.1.177.500.004695
ORF1ab/nsp3720T720NaCtaAt11B.1.177.560.000668
ORF1ab/nsp3720T720IaCtaTt11B.1.177.570.000281
ORF1ab/nsp3720T720IaCtaTt11B.1.177.600.000218
ORF1ab/nsp3720T720delACT---11B.1.177.630.002703
ORF1ab/nsp3720T720TacTacA11B.1.177.630.002703
ORF1ab/nsp3720T720delACT---11B.1.177.70.000165
ORF1ab/nsp3720T720IaCtaTt11B.1.177.750.001041
ORF1ab/nsp3720T720delACT---11B.1.177.870.000728
ORF1ab/nsp3720T720LACtCTt11B.1.2100.002132
ORF1ab/nsp3720T720delACT---11B.1.2210.000071
ORF1ab/nsp3720T720IaCtaTt11B.1.2220.001692
ORF1ab/nsp3720T720TacTacC11B.1.2580.000067
ORF1ab/nsp3720T720IaCtaTt11B.1.258.170.000104
ORF1ab/nsp3720T720IaCtaTt11B.1.3110.000275
ORF1ab/nsp3720T720delACT---11B.1.3190.003049
ORF1ab/nsp3720T720IaCtaTt11B.1.3380.008621
ORF1ab/nsp3720T720IaCtaTt11B.1.3490.000715
ORF1ab/nsp3720T720IaCtaTt11B.1.360.000146
ORF1ab/nsp3720T720IaCtaTt11B.1.36.120.009615
ORF1ab/nsp3720T720IaCtaTt11B.1.36.170.000494
ORF1ab/nsp3720T720IaCtaTt11B.1.36.180.00042
ORF1ab/nsp3720T720TacTacA11B.1.36.290.000517
ORF1ab/nsp3720T720IaCtaTt11B.1.3670.000792
ORF1ab/nsp3720T720IaCtaTt11B.1.3690.000285
ORF1ab/nsp3720T720IaCtaTt11B.1.3960.000706
ORF1ab/nsp3720T720IaCtaTt11B.1.3990.001934
ORF1ab/nsp3720T720NaCtaAt11B.1.4270.00005
ORF1ab/nsp3720T720IaCtaTt11B.1.438.10.000107
ORF1ab/nsp3720T720IaCtaTt11B.1.466.10.007194
ORF1ab/nsp3720T720TacTacA11B.1.5250.000113
ORF1ab/nsp3720T720TacTacC11B.1.5260.000024
ORF1ab/nsp3720T720IaCtaTt11B.1.5500.013699
ORF1ab/nsp3720T720IaCtaTt11B.1.564.10.001577
ORF1ab/nsp3720T720IaCtaTt11B.1.5700.002941
ORF1ab/nsp3720T720IaCtaTt11B.1.5750.000303
ORF1ab/nsp3720T720IaCtaTt11B.1.5760.000907
ORF1ab/nsp3720T720IaCtaTt11B.1.5820.000491
ORF1ab/nsp3720T720IaCtaTt11B.1.5950.000261
ORF1ab/nsp3720T720IaCtaTt11B.1.6050.005952
ORF1ab/nsp3720T720IaCtaTt11B.1.6090.000479
ORF1ab/nsp3720T720delACT---11B.1.617.10.000129
ORF1ab/nsp3720T720IaCtaTt11B.1.617.10.000129
ORF1ab/nsp3720T720IaCtaTt11B.1.6190.000871
ORF1ab/nsp3720T720IaCtaTt11B.1.6280.000352
ORF1ab/nsp3720T720IaCtaTt11B.1.6330.041667
ORF1ab/nsp3720T720IaCtaTt11B.1.6380.052632
ORF1ab/nsp3720T720IaCtaTt11B.1.88.10.004808
ORF1ab/nsp3720T720delACT---11B.150.017544
ORF1ab/nsp3720T720delACT---11B.340.013699
ORF1ab/nsp3720T720IaCtaTt11B.40.002208
ORF1ab/nsp3720T720IaCtaTt11B.550.00295
ORF1ab/nsp3720T720IaCtaTt11C.360.000911
ORF1ab/nsp3720T720IaCtaTt11C.36.30.000567
ORF1ab/nsp3720T720IaCtaTt11C.37.10.002618
ORF1ab/nsp3720T720SActTct11D.20.000075
ORF1ab/nsp3720T720IaCtaTt11N.60.007092
ORF1ab/nsp3720T720NaCtaAt11P.10.000016
ORF1ab/nsp3720T720TacTacC11P.10.000016
ORF1ab/nsp3720T720delACT---11P.1.10.000318
ORF1ab/nsp3720T720IaCtaTt11P.1.70.000319
ORF1ab/nsp3720T720AActGct11P.20.000187