CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 719

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3719Y719YY1537YsyntaCtaT1150115014874-4876
ORF1ab/nsp3719Y719delY1537deldelTAC---898914874-4876
ORF1ab/nsp3719Y719HY1537HnonsynTacCac737314874-4876
ORF1ab/nsp3719Y719CY1537CnonsyntActGc414114874-4876
ORF1ab/nsp3719Y719SY1537SnonsyntActCc101014874-4876
ORF1ab/nsp3719Y719DY1537DnonsynTacGac6614874-4876
ORF1ab/nsp3719Y719del1Y1537del1deltaCta-520.44874-4876
ORF1ab/nsp3719Y719del1Y1537del1delTac-ac520.44874-4876
ORF1ab/nsp3719Y719del1Y1537del1delTAcC-c510.24874-4876
ORF1ab/nsp3719Y719NY1537NnonsynTacAac4414874-4876
ORF1ab/nsp3719Y719XY1537XnonsyntaCtaA2214874-4876
ORF1ab/nsp3719Y719del2Y1537del2deltACt--2214874-4876

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3719Y719YtaCtaT11501150All0.00022
ORF1ab/nsp3719Y719YtaCtaT168168B.1.177.90.223702
ORF1ab/nsp3719Y719YtaCtaT146146B.1.177.40.030815
ORF1ab/nsp3719Y719YtaCtaT116116B.1.20.001021
ORF1ab/nsp3719Y719YtaCtaT109109B.1.1.70.000098
ORF1ab/nsp3719Y719delTAC---8989All0.000017
ORF1ab/nsp3719Y719YtaCtaT8686AY.430.000381
ORF1ab/nsp3719Y719HTacCac7373All0.000014
ORF1ab/nsp3719Y719YtaCtaT7070AY.1030.000435
ORF1ab/nsp3719Y719YtaCtaT6969B.1.243.21
ORF1ab/nsp3719Y719YtaCtaT4949B.1.617.20.000185
ORF1ab/nsp3719Y719YtaCtaT4242B.1.10.000762
ORF1ab/nsp3719Y719CtActGc4141All0.000008
ORF1ab/nsp3719Y719YtaCtaT4141AY.40.000064
ORF1ab/nsp3719Y719YtaCtaT4040B.10.000366
ORF1ab/nsp3719Y719delTAC---3131B.1.1.70.000028
ORF1ab/nsp3719Y719YtaCtaT2424AY.250.000144
ORF1ab/nsp3719Y719YtaCtaT1616P.10.000252
ORF1ab/nsp3719Y719YtaCtaT1414B.1.2580.000932
ORF1ab/nsp3719Y719YtaCtaT1111AY.260.000311
ORF1ab/nsp3719Y719YtaCtaT1111AY.4.20.000239
ORF1ab/nsp3719Y719StActCc1010All0.000002
ORF1ab/nsp3719Y719HTacCac99B.1.617.20.000034
ORF1ab/nsp3719Y719HTacCac77B.1.1.70.000006
ORF1ab/nsp3719Y719YtaCtaT77B.1.1600.000218
ORF1ab/nsp3719Y719DTacGac66All0.000001
ORF1ab/nsp3719Y719YtaCtaT66AY.390.000148
ORF1ab/nsp3719Y719HTacCac66B.1.10.000109
ORF1ab/nsp3719Y719YtaCtaT66B.1.1770.000079
ORF1ab/nsp3719Y719delTAC---66B.1.1770.000079
ORF1ab/nsp3719Y719del1taCta-25All0
ORF1ab/nsp3719Y719del1Tac-ac25All0
ORF1ab/nsp3719Y719del1TAcC-c15All0
ORF1ab/nsp3719Y719CtActGc55AY.1020.000133
ORF1ab/nsp3719Y719YtaCtaT55AY.1180.000313
ORF1ab/nsp3719Y719YtaCtaT55AY.30.00005
ORF1ab/nsp3719Y719YtaCtaT55B.1.30.013089
ORF1ab/nsp3719Y719CtActGc55B.1.617.20.000019
ORF1ab/nsp3719Y719YtaCtaT44A.280.010582
ORF1ab/nsp3719Y719NTacAac44All0.000001
ORF1ab/nsp3719Y719YtaCtaT44AY.1190.000141
ORF1ab/nsp3719Y719CtActGc44AY.260.000113
ORF1ab/nsp3719Y719CtActGc44AY.40.000006
ORF1ab/nsp3719Y719delTAC---44AY.430.000018
ORF1ab/nsp3719Y719HTacCac44AY.440.000024
ORF1ab/nsp3719Y719StActCc44AY.99.20.000369
ORF1ab/nsp3719Y719HTacCac44B.10.000037
ORF1ab/nsp3719Y719YtaCtaT44B.1.1.280.001245
ORF1ab/nsp3719Y719HTacCac44B.1.20.000035
ORF1ab/nsp3719Y719YtaCtaT44B.1.6370.000292
ORF1ab/nsp3719Y719YtaCtaT33AY.200.000117
ORF1ab/nsp3719Y719HTacCac33AY.40.000005
ORF1ab/nsp3719Y719delTAC---33AY.40.000005
ORF1ab/nsp3719Y719DTacGac33AY.40.000005
ORF1ab/nsp3719Y719StActCc33AY.430.000013
ORF1ab/nsp3719Y719HTacCac33AY.430.000013
ORF1ab/nsp3719Y719CtActGc33AY.430.000013
ORF1ab/nsp3719Y719CtActGc33AY.440.000018
ORF1ab/nsp3719Y719YtaCtaT33AY.440.000018
ORF1ab/nsp3719Y719HTacCac33B.1.177.40.000633
ORF1ab/nsp3719Y719CtActGc220.111111
ORF1ab/nsp3719Y719delTAC---220.111111
ORF1ab/nsp3719Y719NTacAac220.111111
ORF1ab/nsp3719Y719del2tACt--22All0
ORF1ab/nsp3719Y719XtaCtaA22All0
ORF1ab/nsp3719Y719CtActGc22AY.1030.000012
ORF1ab/nsp3719Y719CtActGc22AY.1180.000125
ORF1ab/nsp3719Y719HTacCac22AY.200.000078
ORF1ab/nsp3719Y719YtaCtaT22AY.230.000139
ORF1ab/nsp3719Y719YtaCtaT22AY.23.10.000835
ORF1ab/nsp3719Y719delTAC---22AY.30.00002
ORF1ab/nsp3719Y719HTacCac22AY.360.000296
ORF1ab/nsp3719Y719delTAC---22AY.440.000012
ORF1ab/nsp3719Y719YtaCtaT22AY.450.000243
ORF1ab/nsp3719Y719YtaCtaT22AY.470.000062
ORF1ab/nsp3719Y719del1Tac-ac22AY.7.10.000225
ORF1ab/nsp3719Y719YtaCtaT22B0.000256
ORF1ab/nsp3719Y719delTAC---22B.1.10.000036
ORF1ab/nsp3719Y719YtaCtaT22B.1.1.2300.018349
ORF1ab/nsp3719Y719YtaCtaT22B.1.1.5190.000079
ORF1ab/nsp3719Y719del1taCta-22B.1.1.70.000002
ORF1ab/nsp3719Y719CtActGc22B.1.1.70.000002
ORF1ab/nsp3719Y719NTacAac22B.1.1.70.000002
ORF1ab/nsp3719Y719YtaCtaT22B.1.1700.008621
ORF1ab/nsp3719Y719YtaCtaT22B.1.177.320.002699
ORF1ab/nsp3719Y719delTAC---22B.1.20.000018
ORF1ab/nsp3719Y719YtaCtaT22B.1.2210.000142
ORF1ab/nsp3719Y719delTAC---22B.1.360.000292
ORF1ab/nsp3719Y719YtaCtaT22B.1.4270.000101
ORF1ab/nsp3719Y719YtaCtaT22B.1.4290.000047
ORF1ab/nsp3719Y719HTacCac22B.1.4970.00063
ORF1ab/nsp3719Y719YtaCtaT22B.1.5960.000174
ORF1ab/nsp3719Y719delTAC---22B.1.617.20.000008
ORF1ab/nsp3719Y719delTAC---22B.1.6190.001742
ORF1ab/nsp3719Y719HTacCac22B.1.6250.004706
ORF1ab/nsp3719Y719YtaCtaT22C.370.000232
ORF1ab/nsp3719Y719delTAC---22P.10.000032
ORF1ab/nsp3719Y719delTAC---11A.2.20.001689
ORF1ab/nsp3719Y719HTacCac11AD.20.000219
ORF1ab/nsp3719Y719YtaCtaT11AY.10.000396
ORF1ab/nsp3719Y719delTAC---11AY.10.000396
ORF1ab/nsp3719Y719YtaCtaT11AY.1000.000046
ORF1ab/nsp3719Y719HTacCac11AY.1030.000006
ORF1ab/nsp3719Y719YtaCtaT11AY.1040.001984
ORF1ab/nsp3719Y719YtaCtaT11AY.1100.000113
ORF1ab/nsp3719Y719YtaCtaT11AY.1140.000231
ORF1ab/nsp3719Y719YtaCtaT11AY.1170.000085
ORF1ab/nsp3719Y719DTacGac11AY.1190.000035
ORF1ab/nsp3719Y719CtActGc11AY.1200.000037
ORF1ab/nsp3719Y719YtaCtaT11AY.1200.000037
ORF1ab/nsp3719Y719HTacCac11AY.120.10.000321
ORF1ab/nsp3719Y719HTacCac11AY.23.10.000417
ORF1ab/nsp3719Y719YtaCtaT11AY.240.000431
ORF1ab/nsp3719Y719delTAC---11AY.250.000006
ORF1ab/nsp3719Y719HTacCac11AY.250.000006
ORF1ab/nsp3719Y719YtaCtaT11AY.290.000016
ORF1ab/nsp3719Y719HTacCac11AY.30.00001
ORF1ab/nsp3719Y719YtaCtaT11AY.300.000396
ORF1ab/nsp3719Y719YtaCtaT11AY.330.000067
ORF1ab/nsp3719Y719YtaCtaT11AY.340.000097
ORF1ab/nsp3719Y719HTacCac11AY.390.000025
ORF1ab/nsp3719Y719CtActGc11AY.39.10.00004
ORF1ab/nsp3719Y719YtaCtaT11AY.39.10.00004
ORF1ab/nsp3719Y719HTacCac11AY.4.30.000842
ORF1ab/nsp3719Y719YtaCtaT11AY.4.50.000107
ORF1ab/nsp3719Y719delTAC---11AY.4.50.000107
ORF1ab/nsp3719Y719YtaCtaT11AY.400.000964
ORF1ab/nsp3719Y719del2tACt--11AY.430.000004
ORF1ab/nsp3719Y719del2tACt--11AY.440.000006
ORF1ab/nsp3719Y719DTacGac11AY.440.000006
ORF1ab/nsp3719Y719YtaCtaT11AY.460.000104
ORF1ab/nsp3719Y719StActCc11AY.46.30.000934
ORF1ab/nsp3719Y719HTacCac11AY.470.000031
ORF1ab/nsp3719Y719YtaCtaT11AY.50.000021
ORF1ab/nsp3719Y719delTAC---11AY.5.30.000337
ORF1ab/nsp3719Y719delTAC---11AY.670.000464
ORF1ab/nsp3719Y719StActCc11AY.690.000187
ORF1ab/nsp3719Y719YtaCtaT11AY.700.000209
ORF1ab/nsp3719Y719YtaCtaT11AY.710.000475
ORF1ab/nsp3719Y719YtaCtaT11AY.75.10.00018
ORF1ab/nsp3719Y719delTAC---11AY.810.001992
ORF1ab/nsp3719Y719YtaCtaT11AY.90.000068
ORF1ab/nsp3719Y719delTAC---11AY.940.000443
ORF1ab/nsp3719Y719YtaCtaT11AY.98.10.000048
ORF1ab/nsp3719Y719delTAC---11AY.990.001049
ORF1ab/nsp3719Y719YtaCtaT11AY.99.20.000092
ORF1ab/nsp3719Y719delTAC---11B.10.000009
ORF1ab/nsp3719Y719CtActGc11B.10.000009
ORF1ab/nsp3719Y719XtaCtaA11B.10.000009
ORF1ab/nsp3719Y719CtActGc11B.1.10.000018
ORF1ab/nsp3719Y719delTAC---11B.1.1.1390.022727
ORF1ab/nsp3719Y719delTAC---11B.1.1.1420.017544
ORF1ab/nsp3719Y719YtaCtaT11B.1.1.2140.000055
ORF1ab/nsp3719Y719HTacCac11B.1.1.2140.000055
ORF1ab/nsp3719Y719YtaCtaT11B.1.1.2630.001558
ORF1ab/nsp3719Y719HTacCac11B.1.1.2910.000742
ORF1ab/nsp3719Y719YtaCtaT11B.1.1.3020.002075
ORF1ab/nsp3719Y719YtaCtaT11B.1.1.330.000421
ORF1ab/nsp3719Y719XtaCtaA11B.1.1.3710.010417
ORF1ab/nsp3719Y719YtaCtaT11B.1.1.390.00051
ORF1ab/nsp3719Y719delTAC---11B.1.1.4090.002833
ORF1ab/nsp3719Y719HTacCac11B.1.1.80.003584
ORF1ab/nsp3719Y719delTAC---11B.1.1490.003425
ORF1ab/nsp3719Y719delTAC---11B.1.1570.002985
ORF1ab/nsp3719Y719delTAC---11B.1.1600.000031
ORF1ab/nsp3719Y719YtaCtaT11B.1.160.300.002976
ORF1ab/nsp3719Y719delTAC---11B.1.177.160.000664
ORF1ab/nsp3719Y719YtaCtaT11B.1.177.230.003236
ORF1ab/nsp3719Y719delTAC---11B.1.177.500.004695
ORF1ab/nsp3719Y719YtaCtaT11B.1.177.560.000668
ORF1ab/nsp3719Y719delTAC---11B.1.177.630.002703
ORF1ab/nsp3719Y719delTAC---11B.1.177.70.000165
ORF1ab/nsp3719Y719YtaCtaT11B.1.177.80.000752
ORF1ab/nsp3719Y719delTAC---11B.1.177.870.000728
ORF1ab/nsp3719Y719HTacCac11B.1.2100.002132
ORF1ab/nsp3719Y719delTAC---11B.1.2210.000071
ORF1ab/nsp3719Y719YtaCtaT11B.1.2340.000132
ORF1ab/nsp3719Y719YtaCtaT11B.1.2360.002053
ORF1ab/nsp3719Y719YtaCtaT11B.1.258.170.000104
ORF1ab/nsp3719Y719YtaCtaT11B.1.258.210.007752
ORF1ab/nsp3719Y719HTacCac11B.1.3060.005714
ORF1ab/nsp3719Y719delTAC---11B.1.3190.003049
ORF1ab/nsp3719Y719CtActGc11B.1.3320.003497
ORF1ab/nsp3719Y719HTacCac11B.1.3490.000715
ORF1ab/nsp3719Y719HTacCac11B.1.3510.00003
ORF1ab/nsp3719Y719YtaCtaT11B.1.36.270.000763
ORF1ab/nsp3719Y719YtaCtaT11B.1.3660.004878
ORF1ab/nsp3719Y719StActCc11B.1.3690.000285
ORF1ab/nsp3719Y719HTacCac11B.1.3690.000285
ORF1ab/nsp3719Y719YtaCtaT11B.1.3690.000285
ORF1ab/nsp3719Y719HTacCac11B.1.416.10.001563
ORF1ab/nsp3719Y719CtActGc11B.1.4270.00005
ORF1ab/nsp3719Y719HTacCac11B.1.438.10.000107
ORF1ab/nsp3719Y719YtaCtaT11B.1.438.10.000107
ORF1ab/nsp3719Y719YtaCtaT11B.1.5170.000427
ORF1ab/nsp3719Y719YtaCtaT11B.1.5260.000024
ORF1ab/nsp3719Y719YtaCtaT11B.1.5400.009709
ORF1ab/nsp3719Y719CtActGc11B.1.5580.004566
ORF1ab/nsp3719Y719HTacCac11B.1.5640.000426
ORF1ab/nsp3719Y719CtActGc11B.1.5960.000087
ORF1ab/nsp3719Y719HTacCac11B.1.5960.000087
ORF1ab/nsp3719Y719YtaCtaT11B.1.617.10.000129
ORF1ab/nsp3719Y719delTAC---11B.1.617.10.000129
ORF1ab/nsp3719Y719del1TAcC-c11B.1.617.20.000004
ORF1ab/nsp3719Y719HTacCac11B.1.619.10.000641
ORF1ab/nsp3719Y719YtaCtaT11B.1.6210.000089
ORF1ab/nsp3719Y719delTAC---11B.150.017544
ORF1ab/nsp3719Y719delTAC---11B.340.013699
ORF1ab/nsp3719Y719YtaCtaT11C.350.000774
ORF1ab/nsp3719Y719YtaCtaT11C.36.30.000567
ORF1ab/nsp3719Y719YtaCtaT11D.20.000075
ORF1ab/nsp3719Y719CtActGc11P.10.000016
ORF1ab/nsp3719Y719delTAC---11P.1.10.000318
ORF1ab/nsp3719Y719YtaCtaT11P.1.150.000232
ORF1ab/nsp3719Y719YtaCtaT11P.1.70.000319
ORF1ab/nsp3719Y719YtaCtaT11P.20.000187
ORF1ab/nsp3719Y719YtaCtaT11P.30.001595
ORF1ab/nsp3719Y719YtaCtaT11P.70.004367
ORF1ab/nsp3719Y719YtaCtaT11Q.10.000126
ORF1ab/nsp3719Y719DTacGac11R.10.00009