CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 719 | Y719Y | Y1537Y | syn | taC | taT | 1150 | 1150 | 1 | 4874-4876 |
ORF1ab/nsp3 | 719 | Y719del | Y1537del | del | TAC | --- | 89 | 89 | 1 | 4874-4876 |
ORF1ab/nsp3 | 719 | Y719H | Y1537H | nonsyn | Tac | Cac | 73 | 73 | 1 | 4874-4876 |
ORF1ab/nsp3 | 719 | Y719C | Y1537C | nonsyn | tAc | tGc | 41 | 41 | 1 | 4874-4876 |
ORF1ab/nsp3 | 719 | Y719S | Y1537S | nonsyn | tAc | tCc | 10 | 10 | 1 | 4874-4876 |
ORF1ab/nsp3 | 719 | Y719D | Y1537D | nonsyn | Tac | Gac | 6 | 6 | 1 | 4874-4876 |
ORF1ab/nsp3 | 719 | Y719del1 | Y1537del1 | del | taC | ta- | 5 | 2 | 0.4 | 4874-4876 |
ORF1ab/nsp3 | 719 | Y719del1 | Y1537del1 | del | Tac | -ac | 5 | 2 | 0.4 | 4874-4876 |
ORF1ab/nsp3 | 719 | Y719del1 | Y1537del1 | del | TAc | C-c | 5 | 1 | 0.2 | 4874-4876 |
ORF1ab/nsp3 | 719 | Y719N | Y1537N | nonsyn | Tac | Aac | 4 | 4 | 1 | 4874-4876 |
ORF1ab/nsp3 | 719 | Y719X | Y1537X | nonsyn | taC | taA | 2 | 2 | 1 | 4874-4876 |
ORF1ab/nsp3 | 719 | Y719del2 | Y1537del2 | del | tAC | t-- | 2 | 2 | 1 | 4874-4876 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1150 | 1150 | All | 0.00022 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 168 | 168 | B.1.177.9 | 0.223702 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 146 | 146 | B.1.177.4 | 0.030815 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 116 | 116 | B.1.2 | 0.001021 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 109 | 109 | B.1.1.7 | 0.000098 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 89 | 89 | All | 0.000017 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 86 | 86 | AY.43 | 0.000381 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 73 | 73 | All | 0.000014 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 70 | 70 | AY.103 | 0.000435 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 69 | 69 | B.1.243.2 | 1 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 49 | 49 | B.1.617.2 | 0.000185 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 42 | 42 | B.1.1 | 0.000762 |
ORF1ab/nsp3 | 719 | Y719C | tAc | tGc | 41 | 41 | All | 0.000008 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 41 | 41 | AY.4 | 0.000064 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 40 | 40 | B.1 | 0.000366 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 31 | 31 | B.1.1.7 | 0.000028 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 24 | 24 | AY.25 | 0.000144 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 16 | 16 | P.1 | 0.000252 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 14 | 14 | B.1.258 | 0.000932 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 11 | 11 | AY.26 | 0.000311 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 11 | 11 | AY.4.2 | 0.000239 |
ORF1ab/nsp3 | 719 | Y719S | tAc | tCc | 10 | 10 | All | 0.000002 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 7 | 7 | B.1.160 | 0.000218 |
ORF1ab/nsp3 | 719 | Y719D | Tac | Gac | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 719 | Y719del1 | taC | ta- | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 719 | Y719del1 | Tac | -ac | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 719 | Y719del1 | TAc | C-c | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 719 | Y719C | tAc | tGc | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 5 | 5 | B.1.3 | 0.013089 |
ORF1ab/nsp3 | 719 | Y719C | tAc | tGc | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 4 | 4 | A.28 | 0.010582 |
ORF1ab/nsp3 | 719 | Y719N | Tac | Aac | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp3 | 719 | Y719C | tAc | tGc | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp3 | 719 | Y719C | tAc | tGc | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 719 | Y719S | tAc | tCc | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 719 | Y719D | Tac | Gac | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 719 | Y719S | tAc | tCc | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 719 | Y719C | tAc | tGc | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 719 | Y719C | tAc | tGc | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp3 | 719 | Y719C | tAc | tGc | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 719 | Y719N | Tac | Aac | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 719 | Y719del2 | tAC | t-- | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 719 | Y719X | taC | taA | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 719 | Y719C | tAc | tGc | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 719 | Y719C | tAc | tGc | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 719 | Y719del1 | Tac | -ac | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 2 | 2 | B.1.1.230 | 0.018349 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 719 | Y719del1 | taC | ta- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 719 | Y719C | tAc | tGc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 719 | Y719N | Tac | Aac | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 2 | 2 | B.1.170 | 0.008621 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 2 | 2 | B.1.177.32 | 0.002699 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 2 | 2 | B.1.619 | 0.001742 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 2 | 2 | B.1.625 | 0.004706 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 719 | Y719D | Tac | Gac | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 719 | Y719C | tAc | tGc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 719 | Y719C | tAc | tGc | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 719 | Y719del2 | tAC | t-- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 719 | Y719del2 | tAC | t-- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 719 | Y719D | Tac | Gac | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 719 | Y719S | tAc | tCc | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 719 | Y719S | tAc | tCc | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 719 | Y719C | tAc | tGc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 719 | Y719X | taC | taA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 719 | Y719C | tAc | tGc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 719 | Y719X | taC | taA | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | B.1.258.21 | 0.007752 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 1 | 1 | B.1.306 | 0.005714 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 719 | Y719C | tAc | tGc | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | B.1.36.27 | 0.000763 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp3 | 719 | Y719S | tAc | tCc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 719 | Y719C | tAc | tGc | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp3 | 719 | Y719C | tAc | tGc | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 719 | Y719C | tAc | tGc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 719 | Y719del1 | TAc | C-c | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 719 | Y719H | Tac | Cac | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 719 | Y719C | tAc | tGc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 719 | Y719del | TAC | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp3 | 719 | Y719Y | taC | taT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 719 | Y719D | Tac | Gac | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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