CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 718 & Codon = Cat

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3718Y718HY1536HnonsynTatCat61261214871-4873

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3718Y718HTatCat612612All0.000117
ORF1ab/nsp3718Y718HTatCat169169AY.430.000749
ORF1ab/nsp3718Y718HTatCat146146AY.40.000227
ORF1ab/nsp3718Y718HTatCat139139B.1.617.20.000523
ORF1ab/nsp3718Y718HTatCat4242B.1.1.70.000038
ORF1ab/nsp3718Y718HTatCat1919AY.290.0003
ORF1ab/nsp3718Y718HTatCat1313AY.440.000079
ORF1ab/nsp3718Y718HTatCat1010C.50.909091
ORF1ab/nsp3718Y718HTatCat99B.1.20.000079
ORF1ab/nsp3718Y718HTatCat77B.1.4160.008883
ORF1ab/nsp3718Y718HTatCat55AY.39.10.000198
ORF1ab/nsp3718Y718HTatCat44AY.1030.000025
ORF1ab/nsp3718Y718HTatCat44AY.9.20.000147
ORF1ab/nsp3718Y718HTatCat44B.10.000037
ORF1ab/nsp3718Y718HTatCat33AY.450.000365
ORF1ab/nsp3718Y718HTatCat33B.1.10.000054
ORF1ab/nsp3718Y718HTatCat22AY.1020.000053
ORF1ab/nsp3718Y718HTatCat22AY.1190.000071
ORF1ab/nsp3718Y718HTatCat22AY.30.00002
ORF1ab/nsp3718Y718HTatCat22AY.340.000194
ORF1ab/nsp3718Y718HTatCat22AY.360.000296
ORF1ab/nsp3718Y718HTatCat22AY.390.000049
ORF1ab/nsp3718Y718HTatCat22AY.5.30.000675
ORF1ab/nsp3718Y718HTatCat22B.1.5260.000047
ORF1ab/nsp3718Y718HTatCat22P.10.000032
ORF1ab/nsp3718Y718HTatCat11AY.1140.000231
ORF1ab/nsp3718Y718HTatCat11AY.1160.000287
ORF1ab/nsp3718Y718HTatCat11AY.120.20.001285
ORF1ab/nsp3718Y718HTatCat11AY.34.10.00051
ORF1ab/nsp3718Y718HTatCat11AY.4.20.000022
ORF1ab/nsp3718Y718HTatCat11AY.460.000104
ORF1ab/nsp3718Y718HTatCat11AY.700.000209
ORF1ab/nsp3718Y718HTatCat11AY.75.10.00018
ORF1ab/nsp3718Y718HTatCat11AY.980.000079
ORF1ab/nsp3718Y718HTatCat11B.1.1.10.000327
ORF1ab/nsp3718Y718HTatCat11B.1.1.3260.001761
ORF1ab/nsp3718Y718HTatCat11B.1.1.4660.008696
ORF1ab/nsp3718Y718HTatCat11B.1.1600.000031
ORF1ab/nsp3718Y718HTatCat11B.1.1770.000013
ORF1ab/nsp3718Y718HTatCat11B.1.360.000146
ORF1ab/nsp3718Y718HTatCat11B.1.5090.000866
ORF1ab/nsp3718Y718HTatCat11P.30.001595

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.