CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 707

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3707I707VI1525VnonsynAtaGta6217621714838-4840
ORF1ab/nsp3707I707MI1525MnonsynatAatG21021014838-4840
ORF1ab/nsp3707I707TI1525TnonsynaTaaCa19319314838-4840
ORF1ab/nsp3707I707delI1525deldelATA---767614838-4840
ORF1ab/nsp3707I707II1525IsynatAatT32210.656254838-4840
ORF1ab/nsp3707I707II1525IsynatAatC32110.343754838-4840
ORF1ab/nsp3707I707KI1525KnonsynaTaaAa242414838-4840
ORF1ab/nsp3707I707LI1525LnonsynAtaTta24130.5416674838-4840
ORF1ab/nsp3707I707LI1525LnonsynAtaCta24110.4583334838-4840
ORF1ab/nsp3707I707RI1525RnonsynaTaaGa141414838-4840
ORF1ab/nsp3707I707PI1525PnonsynATaCCa9914838-4840
ORF1ab/nsp3707I707del1I1525del1delAta-ta430.754838-4840
ORF1ab/nsp3707I707del1I1525del1delAtACt-410.254838-4840
ORF1ab/nsp3707I707EI1525EnonsynATaGAa3314838-4840
ORF1ab/nsp3707I707AI1525AnonsynATaGCa1114838-4840

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3707I707VAtaGta62176217All0.001189
ORF1ab/nsp3707I707VAtaGta51615161AY.690.963412
ORF1ab/nsp3707I707MatAatG210210All0.00004
ORF1ab/nsp3707I707TaTaaCa193193All0.000037
ORF1ab/nsp3707I707VAtaGta191191AY.40.000297
ORF1ab/nsp3707I707VAtaGta162162B.1.1.70.000145
ORF1ab/nsp3707I707MatAatG9595AY.40.000148
ORF1ab/nsp3707I707VAtaGta8181AY.130.013039
ORF1ab/nsp3707I707delATA---7676All0.000015
ORF1ab/nsp3707I707MatAatG7575B.1.1.70.000067
ORF1ab/nsp3707I707VAtaGta5959AY.440.000359
ORF1ab/nsp3707I707VAtaGta5252B.1.617.20.000196
ORF1ab/nsp3707I707TaTaaCa4343AY.9.10.0036
ORF1ab/nsp3707I707VAtaGta4242B.1.1.2220.008568
ORF1ab/nsp3707I707VAtaGta4040B.1.20.000352
ORF1ab/nsp3707I707VAtaGta3535AY.250.000211
ORF1ab/nsp3707I707VAtaGta3333AY.4.20.000716
ORF1ab/nsp3707I707IatAatT2132All0.000004
ORF1ab/nsp3707I707IatAatC1132All0.000002
ORF1ab/nsp3707I707VAtaGta2828P.1.140.001338
ORF1ab/nsp3707I707delATA---2626B.1.1.70.000023
ORF1ab/nsp3707I707VAtaGta2525AY.30.000249
ORF1ab/nsp3707I707TaTaaCa2525AY.440.000152
ORF1ab/nsp3707I707KaTaaAa2424All0.000005
ORF1ab/nsp3707I707LAtaTta1324All0.000002
ORF1ab/nsp3707I707LAtaCta1124All0.000002
ORF1ab/nsp3707I707VAtaGta2121B.130.954545
ORF1ab/nsp3707I707VAtaGta1919AY.290.0003
ORF1ab/nsp3707I707VAtaGta1919B.10.000174
ORF1ab/nsp3707I707TaTaaCa1818AY.1200.000669
ORF1ab/nsp3707I707VAtaGta1818B.1.619.10.011546
ORF1ab/nsp3707I707VAtaGta1717AY.430.000075
ORF1ab/nsp3707I707VAtaGta1515AY.1030.000093
ORF1ab/nsp3707I707RaTaaGa1414All0.000003
ORF1ab/nsp3707I707VAtaGta1414B.1.4290.000329
ORF1ab/nsp3707I707TaTaaCa1313AY.40.00002
ORF1ab/nsp3707I707KaTaaAa1313B.1.4290.000306
ORF1ab/nsp3707I707VAtaGta1111AY.260.000311
ORF1ab/nsp3707I707VAtaGta1111B.1.177.860.002018
ORF1ab/nsp3707I707TaTaaCa1010B.1.1.2410.020704
ORF1ab/nsp3707I707VAtaGta1010P.10.000158
ORF1ab/nsp3707I707PATaCCa99All0.000002
ORF1ab/nsp3707I707VAtaGta99B.1.360.001313
ORF1ab/nsp3707I707TaTaaCa88B.1.1.70.000007
ORF1ab/nsp3707I707VAtaGta88B.1.1770.000105
ORF1ab/nsp3707I707TaTaaCa88B.1.617.20.00003
ORF1ab/nsp3707I707VAtaGta77AY.1020.000186
ORF1ab/nsp3707I707LAtaTta56AY.250.00003
ORF1ab/nsp3707I707LAtaCta16AY.250.000006
ORF1ab/nsp3707I707VAtaGta66AY.390.000148
ORF1ab/nsp3707I707IatAatT66AY.970.010204
ORF1ab/nsp3707I707VAtaGta66B.1.10.000109
ORF1ab/nsp3707I707PATaCCa66B.1.1.70.000005
ORF1ab/nsp3707I707LAtaTta46B.1.1.70.000004
ORF1ab/nsp3707I707LAtaCta26B.1.1.70.000002
ORF1ab/nsp3707I707LAtaCta55AY.1170.000423
ORF1ab/nsp3707I707TaTaaCa55AY.1210.000677
ORF1ab/nsp3707I707IatAatC55AY.40.000008
ORF1ab/nsp3707I707MatAatG55AY.440.00003
ORF1ab/nsp3707I707TaTaaCa55B.10.000046
ORF1ab/nsp3707I707VAtaGta55B.1.9.20.5
ORF1ab/nsp3707I707del1Ata-ta34All0.000001
ORF1ab/nsp3707I707del1AtACt-14All0
ORF1ab/nsp3707I707VAtaGta44AY.1000.000184
ORF1ab/nsp3707I707VAtaGta44AY.200.000155
ORF1ab/nsp3707I707TaTaaCa44AY.4.20.000087
ORF1ab/nsp3707I707VAtaGta44AY.460.000416
ORF1ab/nsp3707I707TaTaaCa44AY.470.000124
ORF1ab/nsp3707I707MatAatG44AY.930.001092
ORF1ab/nsp3707I707TaTaaCa44AY.99.20.000369
ORF1ab/nsp3707I707VAtaGta44B.1.177.670.030534
ORF1ab/nsp3707I707VAtaGta44B.1.5260.000094
ORF1ab/nsp3707I707MatAatG44B.1.617.20.000015
ORF1ab/nsp3707I707EATaGAa33All0.000001
ORF1ab/nsp3707I707TaTaaCa33AY.30.00003
ORF1ab/nsp3707I707TaTaaCa33AY.3.10.000256
ORF1ab/nsp3707I707VAtaGta33AY.330.0002
ORF1ab/nsp3707I707VAtaGta33AY.46.30.002801
ORF1ab/nsp3707I707TaTaaCa33AY.46.60.000217
ORF1ab/nsp3707I707VAtaGta33AY.470.000093
ORF1ab/nsp3707I707VAtaGta33AY.60.000123
ORF1ab/nsp3707I707RaTaaGa33B.10.000027
ORF1ab/nsp3707I707delATA---33B.10.000027
ORF1ab/nsp3707I707MatAatG33B.10.000027
ORF1ab/nsp3707I707TaTaaCa33B.1.10.000054
ORF1ab/nsp3707I707IatAatT33B.1.1.70.000003
ORF1ab/nsp3707I707delATA---33B.1.1770.00004
ORF1ab/nsp3707I707VAtaGta33B.1.177.150.001893
ORF1ab/nsp3707I707TaTaaCa33B.1.20.000026
ORF1ab/nsp3707I707VAtaGta33B.1.2430.000209
ORF1ab/nsp3707I707VAtaGta33B.1.3510.000089
ORF1ab/nsp3707I707KaTaaAa33B.1.5960.000261
ORF1ab/nsp3707I707VAtaGta33C.36.30.001702
ORF1ab/nsp3707I707EATaGAa220.111111
ORF1ab/nsp3707I707delATA---220.111111
ORF1ab/nsp3707I707TaTaaCa22AY.1030.000012
ORF1ab/nsp3707I707MatAatG22AY.1030.000012
ORF1ab/nsp3707I707VAtaGta22AY.1060.00067
ORF1ab/nsp3707I707TaTaaCa22AY.240.000862
ORF1ab/nsp3707I707MatAatG22AY.250.000012
ORF1ab/nsp3707I707MatAatG22AY.30.00002
ORF1ab/nsp3707I707IatAatT22AY.3.10.000171
ORF1ab/nsp3707I707VAtaGta22AY.39.10.000079
ORF1ab/nsp3707I707LAtaTta22AY.40.000003
ORF1ab/nsp3707I707delATA---22AY.40.000003
ORF1ab/nsp3707I707VAtaGta22AY.4.50.000215
ORF1ab/nsp3707I707VAtaGta22AY.420.00008
ORF1ab/nsp3707I707TaTaaCa22AY.430.000009
ORF1ab/nsp3707I707MatAatG22AY.430.000009
ORF1ab/nsp3707I707TaTaaCa22AY.460.000208
ORF1ab/nsp3707I707VAtaGta22AY.50.000041
ORF1ab/nsp3707I707VAtaGta22AY.610.00021
ORF1ab/nsp3707I707TaTaaCa22AY.750.000112
ORF1ab/nsp3707I707VAtaGta22AY.99.10.003106
ORF1ab/nsp3707I707VAtaGta22AY.99.20.000184
ORF1ab/nsp3707I707IatAatT22B.1.10.000036
ORF1ab/nsp3707I707TaTaaCa22B.1.1.3890.012121
ORF1ab/nsp3707I707VAtaGta22B.1.1.5190.000079
ORF1ab/nsp3707I707RaTaaGa22B.1.1.70.000002
ORF1ab/nsp3707I707VAtaGta22B.1.177.320.002699
ORF1ab/nsp3707I707VAtaGta22B.1.177.790.004684
ORF1ab/nsp3707I707RaTaaGa22B.1.20.000018
ORF1ab/nsp3707I707VAtaGta22B.1.2210.000142
ORF1ab/nsp3707I707TaTaaCa22B.1.2400.000431
ORF1ab/nsp3707I707delATA---22B.1.360.000292
ORF1ab/nsp3707I707VAtaGta22B.1.3610.002577
ORF1ab/nsp3707I707VAtaGta22B.1.4270.000101
ORF1ab/nsp3707I707RaTaaGa22B.1.4290.000047
ORF1ab/nsp3707I707KaTaaAa22B.1.617.20.000008
ORF1ab/nsp3707I707VAtaGta22B.1.6190.001742
ORF1ab/nsp3707I707delATA---22B.1.6190.001742
ORF1ab/nsp3707I707VAtaGta22B.1.6370.000146
ORF1ab/nsp3707I707IatAatT22C.1.20.008511
ORF1ab/nsp3707I707VAtaGta22D.20.00015
ORF1ab/nsp3707I707delATA---22P.10.000032
ORF1ab/nsp3707I707delATA---11A.2.20.001689
ORF1ab/nsp3707I707TaTaaCa11A.60.005128
ORF1ab/nsp3707I707AATaGCa11All0
ORF1ab/nsp3707I707IatAatT11AY.1020.000027
ORF1ab/nsp3707I707LAtaCta11AY.1030.000006
ORF1ab/nsp3707I707delATA---11AY.1080.001103
ORF1ab/nsp3707I707VAtaGta11AY.116.10.000311
ORF1ab/nsp3707I707VAtaGta11AY.1170.000085
ORF1ab/nsp3707I707MatAatG11AY.120.000316
ORF1ab/nsp3707I707VAtaGta11AY.1200.000037
ORF1ab/nsp3707I707MatAatG11AY.200.000039
ORF1ab/nsp3707I707TaTaaCa11AY.250.000006
ORF1ab/nsp3707I707RaTaaGa11AY.250.000006
ORF1ab/nsp3707I707TaTaaCa11AY.260.000028
ORF1ab/nsp3707I707TaTaaCa11AY.290.000016
ORF1ab/nsp3707I707MatAatG11AY.290.000016
ORF1ab/nsp3707I707KaTaaAa11AY.30.00001
ORF1ab/nsp3707I707VAtaGta11AY.3.10.000085
ORF1ab/nsp3707I707MatAatG11AY.300.000396
ORF1ab/nsp3707I707VAtaGta11AY.340.000097
ORF1ab/nsp3707I707TaTaaCa11AY.340.000097
ORF1ab/nsp3707I707VAtaGta11AY.360.000148
ORF1ab/nsp3707I707VAtaGta11AY.380.000499
ORF1ab/nsp3707I707MatAatG11AY.390.000025
ORF1ab/nsp3707I707TaTaaCa11AY.390.000025
ORF1ab/nsp3707I707VAtaGta11AY.4.10.000737
ORF1ab/nsp3707I707delATA---11AY.4.50.000107
ORF1ab/nsp3707I707IatAatC11AY.430.000004
ORF1ab/nsp3707I707delATA---11AY.430.000004
ORF1ab/nsp3707I707KaTaaAa11AY.430.000004
ORF1ab/nsp3707I707RaTaaGa11AY.440.000006
ORF1ab/nsp3707I707delATA---11AY.440.000006
ORF1ab/nsp3707I707KaTaaAa11AY.460.000104
ORF1ab/nsp3707I707VAtaGta11AY.46.20.000635
ORF1ab/nsp3707I707VAtaGta11AY.490.003195
ORF1ab/nsp3707I707VAtaGta11AY.5.40.000277
ORF1ab/nsp3707I707VAtaGta11AY.540.000095
ORF1ab/nsp3707I707VAtaGta11AY.550.000917
ORF1ab/nsp3707I707MatAatG11AY.60.000041
ORF1ab/nsp3707I707delATA---11AY.670.000464
ORF1ab/nsp3707I707AATaGCa11AY.690.000187
ORF1ab/nsp3707I707VAtaGta11AY.70.000196
ORF1ab/nsp3707I707VAtaGta11AY.720.001361
ORF1ab/nsp3707I707MatAatG11AY.730.000665
ORF1ab/nsp3707I707IatAatC11AY.740.000116
ORF1ab/nsp3707I707VAtaGta11AY.750.000056
ORF1ab/nsp3707I707VAtaGta11AY.760.004831
ORF1ab/nsp3707I707delATA---11AY.810.001992
ORF1ab/nsp3707I707MatAatG11AY.90.000068
ORF1ab/nsp3707I707MatAatG11AY.9.10.000084
ORF1ab/nsp3707I707delATA---11AY.940.000443
ORF1ab/nsp3707I707VAtaGta11AY.980.000079
ORF1ab/nsp3707I707TaTaaCa11AY.980.000079
ORF1ab/nsp3707I707del1AtACt-11AY.990.001049
ORF1ab/nsp3707I707VAtaGta11B0.000128
ORF1ab/nsp3707I707TaTaaCa11B0.000128
ORF1ab/nsp3707I707IatAatC11B.10.000009
ORF1ab/nsp3707I707EATaGAa11B.1.10.000018
ORF1ab/nsp3707I707TaTaaCa11B.1.1.10.000327
ORF1ab/nsp3707I707PATaCCa11B.1.1.10.000327
ORF1ab/nsp3707I707VAtaGta11B.1.1.100.001115
ORF1ab/nsp3707I707delATA---11B.1.1.1390.022727
ORF1ab/nsp3707I707delATA---11B.1.1.1420.017544
ORF1ab/nsp3707I707RaTaaGa11B.1.1.2910.000742
ORF1ab/nsp3707I707IatAatT11B.1.1.3050.003861
ORF1ab/nsp3707I707delATA---11B.1.1.3110.000358
ORF1ab/nsp3707I707MatAatG11B.1.1.3710.010417
ORF1ab/nsp3707I707MatAatG11B.1.1.3720.000689
ORF1ab/nsp3707I707delATA---11B.1.1.4090.002833
ORF1ab/nsp3707I707VAtaGta11B.1.1.4160.000905
ORF1ab/nsp3707I707delATA---11B.1.1.5190.00004
ORF1ab/nsp3707I707TaTaaCa11B.1.1.5190.00004
ORF1ab/nsp3707I707IatAatC11B.1.1.630.000386
ORF1ab/nsp3707I707KaTaaAa11B.1.1.70.000001
ORF1ab/nsp3707I707del1Ata-ta11B.1.1.70.000001
ORF1ab/nsp3707I707KaTaaAa11B.1.1490.003425
ORF1ab/nsp3707I707delATA---11B.1.1570.002985
ORF1ab/nsp3707I707delATA---11B.1.1600.000031
ORF1ab/nsp3707I707delATA---11B.1.160.70.002079
ORF1ab/nsp3707I707MatAatG11B.1.1770.000013
ORF1ab/nsp3707I707TaTaaCa11B.1.1770.000013
ORF1ab/nsp3707I707IatAatT11B.1.1770.000013
ORF1ab/nsp3707I707LAtaCta11B.1.1770.000013
ORF1ab/nsp3707I707delATA---11B.1.177.110.001698
ORF1ab/nsp3707I707VAtaGta11B.1.177.160.000664
ORF1ab/nsp3707I707delATA---11B.1.177.160.000664
ORF1ab/nsp3707I707MatAatG11B.1.177.200.001517
ORF1ab/nsp3707I707TaTaaCa11B.1.177.320.00135
ORF1ab/nsp3707I707del1Ata-ta11B.1.177.440.000519
ORF1ab/nsp3707I707delATA---11B.1.177.500.004695
ORF1ab/nsp3707I707VAtaGta11B.1.177.570.000281
ORF1ab/nsp3707I707delATA---11B.1.177.570.000281
ORF1ab/nsp3707I707delATA---11B.1.177.580.001332
ORF1ab/nsp3707I707delATA---11B.1.177.630.002703
ORF1ab/nsp3707I707delATA---11B.1.177.70.000165
ORF1ab/nsp3707I707VAtaGta11B.1.177.730.000566
ORF1ab/nsp3707I707delATA---11B.1.177.810.000189
ORF1ab/nsp3707I707delATA---11B.1.177.870.000728
ORF1ab/nsp3707I707delATA---11B.1.20.000009
ORF1ab/nsp3707I707del1Ata-ta11B.1.20.000009
ORF1ab/nsp3707I707IatAatT11B.1.20.000009
ORF1ab/nsp3707I707VAtaGta11B.1.214.20.0006
ORF1ab/nsp3707I707delATA---11B.1.2210.000071
ORF1ab/nsp3707I707IatAatT11B.1.2340.000132
ORF1ab/nsp3707I707VAtaGta11B.1.2400.000216
ORF1ab/nsp3707I707LAtaCta11B.1.2400.000216
ORF1ab/nsp3707I707PATaCCa11B.1.2400.000216
ORF1ab/nsp3707I707PATaCCa11B.1.2430.00007
ORF1ab/nsp3707I707TaTaaCa11B.1.2430.00007
ORF1ab/nsp3707I707delATA---11B.1.2580.000067
ORF1ab/nsp3707I707KaTaaAa11B.1.2580.000067
ORF1ab/nsp3707I707delATA---11B.1.3190.003049
ORF1ab/nsp3707I707LAtaTta11B.1.3240.001605
ORF1ab/nsp3707I707RaTaaGa11B.1.3320.003497
ORF1ab/nsp3707I707TaTaaCa11B.1.3380.008621
ORF1ab/nsp3707I707delATA---11B.1.3510.00003
ORF1ab/nsp3707I707MatAatG11B.1.3510.00003
ORF1ab/nsp3707I707VAtaGta11B.1.36.190.009259
ORF1ab/nsp3707I707VAtaGta11B.1.36.260.002857
ORF1ab/nsp3707I707VAtaGta11B.1.36.290.000517
ORF1ab/nsp3707I707VAtaGta11B.1.4160.001269
ORF1ab/nsp3707I707VAtaGta11B.1.416.10.001563
ORF1ab/nsp3707I707MatAatG11B.1.4290.000024
ORF1ab/nsp3707I707IatAatC11B.1.4290.000024
ORF1ab/nsp3707I707TaTaaCa11B.1.4290.000024
ORF1ab/nsp3707I707IatAatC11B.1.5950.000261
ORF1ab/nsp3707I707VAtaGta11B.1.5960.000087
ORF1ab/nsp3707I707TaTaaCa11B.1.6090.000479
ORF1ab/nsp3707I707delATA---11B.1.617.10.000129
ORF1ab/nsp3707I707LAtaTta11B.1.617.20.000004
ORF1ab/nsp3707I707delATA---11B.1.617.20.000004
ORF1ab/nsp3707I707RaTaaGa11B.1.619.10.000641
ORF1ab/nsp3707I707delATA---11B.150.017544
ORF1ab/nsp3707I707TaTaaCa11B.550.00295
ORF1ab/nsp3707I707VAtaGta11B.6.60.000889
ORF1ab/nsp3707I707VAtaGta11N.40.004255
ORF1ab/nsp3707I707IatAatT11P.10.000016
ORF1ab/nsp3707I707MatAatG11P.10.000016
ORF1ab/nsp3707I707delATA---11P.1.10.000318

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.