CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 697 | S697S | S1515S | syn | tcC | tcT | 2071 | 1963 | 0.947851 | 4808-4810 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1963 | 2071 | All | 0.000375 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1279 | 1295 | B.1.1.7 | 0.001145 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 91 | 92 | AY.4 | 0.000142 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 46 | 46 | B.1.1.58 | 0.247312 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 31 | 45 | B.1 | 0.000284 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 43 | 43 | B.1.525 | 0.004866 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 40 | 40 | AY.102 | 0.001061 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 29 | 31 | B.1.617.2 | 0.000109 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 29 | 30 | AY.43 | 0.000128 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 28 | 29 | AY.44 | 0.00017 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 26 | 26 | AY.5 | 0.000537 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 16 | 20 | B.1.2 | 0.000141 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 11 | 19 | AY.103 | 0.000068 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 16 | 18 | AY.39 | 0.000395 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 16 | 17 | P.1 | 0.000252 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 10 | 16 | AY.25 | 0.00006 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 14 | 14 | B.1.1.284 | 0.001504 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 13 | 14 | B.1.177 | 0.000171 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 12 | 12 | B.1.177.74 | 0.181818 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 11 | 11 | B.1.523 | 0.026961 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 5 | 10 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 10 | 10 | B.1.429 | 0.000235 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 7 | 9 | AY.3 | 0.00007 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 7 | 7 | AY.42 | 0.000282 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 7 | 7 | B.1.243 | 0.000487 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 6 | 6 | AY.46.4 | 0.000987 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 6 | 6 | AY.61 | 0.000629 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 6 | 6 | AZ.3 | 0.009119 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 6 | 6 | B.1.305 | 0.012903 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 6 | 6 | B.1.408 | 0.02214 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 5 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 3 | 5 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 3 | 4 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 3 | 3 | 0.166667 | |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 2 | 3 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 3 | 3 | B.1.1.127 | 0.1875 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 3 | 3 | B.1.232 | 0.001612 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 2 | 2 | AE.8 | 0.000978 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 2 | 2 | AV.1 | 0.010101 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 2 | 2 | AY.66 | 0.002139 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 2 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 2 | 2 | B.1.258.3 | 0.00335 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 2 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 2 | 2 | C.9 | 0.060606 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | B.1.473 | 0.019231 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | B.4.4 | 0.018868 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 697 | S697S | tcC | tcT | 1 | 1 | P.2 | 0.000187 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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