CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 697 & Codon = tcA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3697S697SS1515SsyntcCtcA20711080.05214874808-4810

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3697S697StcCtcA1082071All0.000021
ORF1ab/nsp3697S697StcCtcA161295B.1.1.70.000014
ORF1ab/nsp3697S697StcCtcA192AY.40.000002
ORF1ab/nsp3697S697StcCtcA1445B.10.000128
ORF1ab/nsp3697S697StcCtcA231B.1.617.20.000008
ORF1ab/nsp3697S697StcCtcA130AY.430.000004
ORF1ab/nsp3697S697StcCtcA129AY.440.000006
ORF1ab/nsp3697S697StcCtcA420B.1.20.000035
ORF1ab/nsp3697S697StcCtcA819AY.1030.00005
ORF1ab/nsp3697S697StcCtcA218AY.390.000049
ORF1ab/nsp3697S697StcCtcA117P.10.000016
ORF1ab/nsp3697S697StcCtcA616AY.250.000036
ORF1ab/nsp3697S697StcCtcA1515B.1.2400.003233
ORF1ab/nsp3697S697StcCtcA114B.1.1770.000013
ORF1ab/nsp3697S697StcCtcA510B.1.10.000091
ORF1ab/nsp3697S697StcCtcA29AY.30.00002
ORF1ab/nsp3697S697StcCtcA45AY.4.20.000087
ORF1ab/nsp3697S697StcCtcA25B.1.5960.000174
ORF1ab/nsp3697S697StcCtcA14AY.470.000031
ORF1ab/nsp3697S697StcCtcA13AY.330.000067
ORF1ab/nsp3697S697StcCtcA33B.1.1.2160.002671
ORF1ab/nsp3697S697StcCtcA33B.1.4280.003061
ORF1ab/nsp3697S697StcCtcA22A.210.00554
ORF1ab/nsp3697S697StcCtcA22B.1.1.2220.000408
ORF1ab/nsp3697S697StcCtcA22B.1.1.250.001137
ORF1ab/nsp3697S697StcCtcA12B.1.2580.000067
ORF1ab/nsp3697S697StcCtcA12B.1.617.10.000129
ORF1ab/nsp3697S697StcCtcA11AY.850.000427
ORF1ab/nsp3697S697StcCtcA11B.1.177.530.002392
ORF1ab/nsp3697S697StcCtcA11B.1.36.290.000517
ORF1ab/nsp3697S697StcCtcA11B.1.36.80.001
ORF1ab/nsp3697S697StcCtcA11B.1.3690.000285
ORF1ab/nsp3697S697StcCtcA11B.1.4270.00005
ORF1ab/nsp3697S697StcCtcA11C.370.000116

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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