CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 697

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3697S697SS1515SsyntcCtcT207119630.9478514808-4810
ORF1ab/nsp3697S697SS1515SsyntcCtcA20711080.05214874808-4810
ORF1ab/nsp3697S697FS1515FnonsyntCctTc127412730.9992154808-4810
ORF1ab/nsp3697S697FS1515FnonsyntCCtTT127410.0007849294808-4810
ORF1ab/nsp3697S697YS1515YnonsyntCctAc848414808-4810
ORF1ab/nsp3697S697delS1515deldelTCC---656514808-4810
ORF1ab/nsp3697S697PS1515PnonsynTccCcc414114808-4810
ORF1ab/nsp3697S697CS1515CnonsyntCctGc191914808-4810
ORF1ab/nsp3697S697del1S1515del1deltCct-c750.7142864808-4810
ORF1ab/nsp3697S697del1S1515del1delTcc-cc710.1428574808-4810
ORF1ab/nsp3697S697del1S1515del1delTCC-NN710.1428574808-4810
ORF1ab/nsp3697S697AS1515AnonsynTccGcc430.754808-4810
ORF1ab/nsp3697S697AS1515AnonsynTcCGcT410.254808-4810
ORF1ab/nsp3697S697TS1515TnonsynTccAcc3314808-4810
ORF1ab/nsp3697S697VS1515VnonsynTCCGTT210.54808-4810
ORF1ab/nsp3697S697VS1515VnonsynTCcGTc210.54808-4810
ORF1ab/nsp3697S697IS1515InonsynTCCATT1114808-4810
ORF1ab/nsp3697S697LS1515LnonsyntCCtTG1114808-4810
ORF1ab/nsp3697S697del2S1515del2deltCCt--1114808-4810
ORF1ab/nsp3697S697NS1515NnonsynTCcAAc1114808-4810

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3697S697StcCtcT19632071All0.000375
ORF1ab/nsp3697S697StcCtcA1082071All0.000021
ORF1ab/nsp3697S697StcCtcT12791295B.1.1.70.001145
ORF1ab/nsp3697S697StcCtcA161295B.1.1.70.000014
ORF1ab/nsp3697S697FtCctTc12731274All0.000243
ORF1ab/nsp3697S697FtCCtTT11274All0
ORF1ab/nsp3697S697FtCctTc316316B.1.1.70.000283
ORF1ab/nsp3697S697FtCctTc216216B.1.6180.870968
ORF1ab/nsp3697S697StcCtcT9192AY.40.000142
ORF1ab/nsp3697S697StcCtcA192AY.40.000002
ORF1ab/nsp3697S697FtCctTc8686B.1.1770.001132
ORF1ab/nsp3697S697YtCctAc8484All0.000016
ORF1ab/nsp3697S697FtCctTc8080B.1.20.000704
ORF1ab/nsp3697S697delTCC---6565All0.000012
ORF1ab/nsp3697S697FtCctTc5252B.10.000476
ORF1ab/nsp3697S697YtCctAc5050B.1.177.210.003824
ORF1ab/nsp3697S697StcCtcT4646B.1.1.580.247312
ORF1ab/nsp3697S697StcCtcT3145B.10.000284
ORF1ab/nsp3697S697StcCtcA1445B.10.000128
ORF1ab/nsp3697S697StcCtcT4343B.1.5250.004866
ORF1ab/nsp3697S697PTccCcc4141All0.000008
ORF1ab/nsp3697S697StcCtcT4040AY.1020.001061
ORF1ab/nsp3697S697FtCctTc3535AY.40.000054
ORF1ab/nsp3697S697StcCtcT2931B.1.617.20.000109
ORF1ab/nsp3697S697StcCtcA231B.1.617.20.000008
ORF1ab/nsp3697S697StcCtcT2930AY.430.000128
ORF1ab/nsp3697S697StcCtcA130AY.430.000004
ORF1ab/nsp3697S697PTccCcc2929AY.250.000174
ORF1ab/nsp3697S697FtCctTc2929AY.440.000177
ORF1ab/nsp3697S697StcCtcT2829AY.440.00017
ORF1ab/nsp3697S697StcCtcA129AY.440.000006
ORF1ab/nsp3697S697FtCctTc2626AY.460.002706
ORF1ab/nsp3697S697StcCtcT2626AY.50.000537
ORF1ab/nsp3697S697FtCctTc2626B.1.1260.033163
ORF1ab/nsp3697S697FtCctTc2525B.1.617.20.000094
ORF1ab/nsp3697S697FtCctTc2424AY.430.000106
ORF1ab/nsp3697S697FtCctTc2323AY.250.000138
ORF1ab/nsp3697S697FtCctTc2222B.1.5250.00249
ORF1ab/nsp3697S697FtCctTc2121AY.200.000816
ORF1ab/nsp3697S697FtCctTc2020AY.1200.000744
ORF1ab/nsp3697S697StcCtcT1620B.1.20.000141
ORF1ab/nsp3697S697StcCtcA420B.1.20.000035
ORF1ab/nsp3697S697CtCctGc1919All0.000004
ORF1ab/nsp3697S697StcCtcT1119AY.1030.000068
ORF1ab/nsp3697S697StcCtcA819AY.1030.00005
ORF1ab/nsp3697S697StcCtcT1618AY.390.000395
ORF1ab/nsp3697S697StcCtcA218AY.390.000049
ORF1ab/nsp3697S697FtCctTc1717AY.30.000169
ORF1ab/nsp3697S697delTCC---1717B.1.1.70.000015
ORF1ab/nsp3697S697StcCtcT1617P.10.000252
ORF1ab/nsp3697S697StcCtcA117P.10.000016
ORF1ab/nsp3697S697StcCtcT1016AY.250.00006
ORF1ab/nsp3697S697StcCtcA616AY.250.000036
ORF1ab/nsp3697S697FtCctTc1616B.1.4800.039801
ORF1ab/nsp3697S697FtCctTc1616C.370.001857
ORF1ab/nsp3697S697StcCtcA1515B.1.2400.003233
ORF1ab/nsp3697S697FtCctTc1515B.1.5820.00736
ORF1ab/nsp3697S697StcCtcT1414B.1.1.2840.001504
ORF1ab/nsp3697S697StcCtcT1314B.1.1770.000171
ORF1ab/nsp3697S697StcCtcA114B.1.1770.000013
ORF1ab/nsp3697S697FtCctTc1212AY.1030.000075
ORF1ab/nsp3697S697StcCtcT1212B.1.177.740.181818
ORF1ab/nsp3697S697FtCctTc1212B.1.177.810.002272
ORF1ab/nsp3697S697StcCtcT1111B.1.5230.026961
ORF1ab/nsp3697S697YtCctAc1010AY.440.000061
ORF1ab/nsp3697S697StcCtcA510B.1.10.000091
ORF1ab/nsp3697S697StcCtcT510B.1.10.000091
ORF1ab/nsp3697S697CtCctGc1010B.1.1.70.000009
ORF1ab/nsp3697S697StcCtcT1010B.1.4290.000235
ORF1ab/nsp3697S697StcCtcT79AY.30.00007
ORF1ab/nsp3697S697StcCtcA29AY.30.00002
ORF1ab/nsp3697S697FtCctTc99AY.860.007469
ORF1ab/nsp3697S697FtCctTc99P.10.000142
ORF1ab/nsp3697S697FtCctTc88AY.360.001186
ORF1ab/nsp3697S697FtCctTc88B.1.10.000145
ORF1ab/nsp3697S697CtCctGc88B.1.5250.000905
ORF1ab/nsp3697S697FtCctTc88Q.10.001011
ORF1ab/nsp3697S697del1tCct-c57All0.000001
ORF1ab/nsp3697S697del1Tcc-cc17All0
ORF1ab/nsp3697S697del1TCC-NN17All0
ORF1ab/nsp3697S697FtCctTc77AY.1000.000322
ORF1ab/nsp3697S697StcCtcT77AY.1190.000247
ORF1ab/nsp3697S697StcCtcT77AY.420.000282
ORF1ab/nsp3697S697FtCctTc77AY.750.000392
ORF1ab/nsp3697S697StcCtcT77B.1.2430.000487
ORF1ab/nsp3697S697FtCctTc77B.1.2580.000466
ORF1ab/nsp3697S697FtCctTc66AY.1180.000376
ORF1ab/nsp3697S697StcCtcT66AY.46.40.000987
ORF1ab/nsp3697S697StcCtcT66AY.610.000629
ORF1ab/nsp3697S697FtCctTc66AY.670.002786
ORF1ab/nsp3697S697StcCtcT66AZ.30.009119
ORF1ab/nsp3697S697StcCtcT66B.1.1.5190.000238
ORF1ab/nsp3697S697StcCtcT66B.1.3050.012903
ORF1ab/nsp3697S697StcCtcT66B.1.4080.02214
ORF1ab/nsp3697S697StcCtcA45AY.4.20.000087
ORF1ab/nsp3697S697StcCtcT15AY.4.20.000022
ORF1ab/nsp3697S697FtCctTc55B.1.1.390.002548
ORF1ab/nsp3697S697StcCtcT35B.1.5960.000261
ORF1ab/nsp3697S697StcCtcA25B.1.5960.000174
ORF1ab/nsp3697S697ATccGcc34All0.000001
ORF1ab/nsp3697S697ATcCGcT14All0
ORF1ab/nsp3697S697FtCctTc44AY.1210.000541
ORF1ab/nsp3697S697FtCctTc44AY.470.000124
ORF1ab/nsp3697S697StcCtcT34AY.470.000093
ORF1ab/nsp3697S697StcCtcA14AY.470.000031
ORF1ab/nsp3697S697StcCtcT44B.1.1.280.001245
ORF1ab/nsp3697S697FtCctTc44B.1.1.2940.005063
ORF1ab/nsp3697S697YtCctAc44B.1.2210.000284
ORF1ab/nsp3697S697StcCtcT44B.1.2210.000284
ORF1ab/nsp3697S697FtCctTc44B.1.2350.010076
ORF1ab/nsp3697S697FtCctTc44B.1.6280.001409
ORF1ab/nsp3697S697StcCtcT44Q.80.00066
ORF1ab/nsp3697S697StcCtcT330.166667
ORF1ab/nsp3697S697TTccAcc33All0.000001
ORF1ab/nsp3697S697StcCtcT33AY.230.000209
ORF1ab/nsp3697S697FtCctTc33AY.260.000085
ORF1ab/nsp3697S697StcCtcT23AY.330.000134
ORF1ab/nsp3697S697StcCtcA13AY.330.000067
ORF1ab/nsp3697S697FtCctTc33AY.4.20.000065
ORF1ab/nsp3697S697FtCctTc33AY.4.40.001227
ORF1ab/nsp3697S697StcCtcT33AY.540.000286
ORF1ab/nsp3697S697StcCtcT33B.1.1.1270.1875
ORF1ab/nsp3697S697StcCtcA33B.1.1.2160.002671
ORF1ab/nsp3697S697FtCctTc33B.1.1.2220.000612
ORF1ab/nsp3697S697StcCtcT33B.1.1600.000094
ORF1ab/nsp3697S697StcCtcT33B.1.2320.001612
ORF1ab/nsp3697S697FtCctTc33B.1.3510.000089
ORF1ab/nsp3697S697StcCtcA33B.1.4280.003061
ORF1ab/nsp3697S697YtCctAc33B.1.5090.002597
ORF1ab/nsp3697S697YtCctAc33B.1.617.20.000011
ORF1ab/nsp3697S697delTCC---220.111111
ORF1ab/nsp3697S697FtCctTc120.055556
ORF1ab/nsp3697S697FtCCtTT120.055556
ORF1ab/nsp3697S697ATccGcc120.055556
ORF1ab/nsp3697S697ATcCGcT120.055556
ORF1ab/nsp3697S697VTCcGTc120.055556
ORF1ab/nsp3697S697VTCCGTT120.055556
ORF1ab/nsp3697S697StcCtcA22A.210.00554
ORF1ab/nsp3697S697StcCtcT22AE.80.000978
ORF1ab/nsp3697S697VTCCGTT12All0
ORF1ab/nsp3697S697VTCcGTc12All0
ORF1ab/nsp3697S697StcCtcT22AV.10.010101
ORF1ab/nsp3697S697StcCtcT22AY.1000.000092
ORF1ab/nsp3697S697StcCtcT22AY.1100.000225
ORF1ab/nsp3697S697FtCctTc22AY.116.10.000623
ORF1ab/nsp3697S697StcCtcT22AY.1180.000125
ORF1ab/nsp3697S697FtCctTc22AY.120.000632
ORF1ab/nsp3697S697StcCtcT22AY.1200.000074
ORF1ab/nsp3697S697StcCtcT22AY.200.000078
ORF1ab/nsp3697S697StcCtcT22AY.260.000057
ORF1ab/nsp3697S697StcCtcT22AY.290.000032
ORF1ab/nsp3697S697FtCctTc22AY.290.000032
ORF1ab/nsp3697S697YtCctAc22AY.40.000003
ORF1ab/nsp3697S697delTCC---22AY.40.000003
ORF1ab/nsp3697S697delTCC---22AY.440.000012
ORF1ab/nsp3697S697FtCctTc22AY.50.000041
ORF1ab/nsp3697S697StcCtcT22AY.5.30.000675
ORF1ab/nsp3697S697StcCtcT22AY.660.002139
ORF1ab/nsp3697S697FtCctTc22AY.690.000373
ORF1ab/nsp3697S697StcCtcT22AY.750.000112
ORF1ab/nsp3697S697StcCtcT22AY.790.002421
ORF1ab/nsp3697S697delTCC---22B.10.000018
ORF1ab/nsp3697S697YtCctAc22B.1.10.000036
ORF1ab/nsp3697S697StcCtcT22B.1.1.1410.004024
ORF1ab/nsp3697S697StcCtcT22B.1.1.2140.000111
ORF1ab/nsp3697S697StcCtcA22B.1.1.2220.000408
ORF1ab/nsp3697S697StcCtcA22B.1.1.250.001137
ORF1ab/nsp3697S697FtCctTc22B.1.1.5190.000079
ORF1ab/nsp3697S697PTccCcc22B.1.1.70.000002
ORF1ab/nsp3697S697FtCctTc22B.1.1.700.000682
ORF1ab/nsp3697S697FtCctTc22B.1.1600.000062
ORF1ab/nsp3697S697FtCctTc22B.1.177.800.003824
ORF1ab/nsp3697S697YtCctAc22B.1.20.000018
ORF1ab/nsp3697S697StcCtcT12B.1.2580.000067
ORF1ab/nsp3697S697StcCtcA12B.1.2580.000067
ORF1ab/nsp3697S697StcCtcT22B.1.258.30.00335
ORF1ab/nsp3697S697StcCtcT22B.1.3490.00143
ORF1ab/nsp3697S697delTCC---22B.1.360.000292
ORF1ab/nsp3697S697FtCctTc22B.1.3990.003868
ORF1ab/nsp3697S697FtCctTc22B.1.5950.000522
ORF1ab/nsp3697S697StcCtcT12B.1.617.10.000129
ORF1ab/nsp3697S697StcCtcA12B.1.617.10.000129
ORF1ab/nsp3697S697delTCC---22B.1.617.20.000008
ORF1ab/nsp3697S697delTCC---22B.1.6190.001742
ORF1ab/nsp3697S697FtCctTc22B.1.619.10.001283
ORF1ab/nsp3697S697StcCtcT22B.1.6210.000177
ORF1ab/nsp3697S697StcCtcT22C.90.060606
ORF1ab/nsp3697S697delTCC---22P.10.000032
ORF1ab/nsp3697S697StcCtcT22P.1.10.000635
ORF1ab/nsp3697S697FtCctTc22P.1.120.000968
ORF1ab/nsp3697S697delTCC---11A.2.20.001689
ORF1ab/nsp3697S697ITCCATT11All0
ORF1ab/nsp3697S697NTCcAAc11All0
ORF1ab/nsp3697S697LtCCtTG11All0
ORF1ab/nsp3697S697del2tCCt--11All0
ORF1ab/nsp3697S697StcCtcT11AY.1010.00049
ORF1ab/nsp3697S697FtCctTc11AY.1020.000027
ORF1ab/nsp3697S697del2tCCt--11AY.1030.000006
ORF1ab/nsp3697S697delTCC---11AY.1130.000142
ORF1ab/nsp3697S697FtCctTc11AY.1170.000085
ORF1ab/nsp3697S697FtCctTc11AY.1190.000035
ORF1ab/nsp3697S697ITCCATT11AY.120.10.000321
ORF1ab/nsp3697S697PTccCcc11AY.120.10.000321
ORF1ab/nsp3697S697del1tCct-c11AY.120.10.000321
ORF1ab/nsp3697S697FtCctTc11AY.140.000088
ORF1ab/nsp3697S697StcCtcT11AY.140.000088
ORF1ab/nsp3697S697StcCtcT11AY.16.10.00047
ORF1ab/nsp3697S697StcCtcT11AY.190.00114
ORF1ab/nsp3697S697delTCC---11AY.250.000006
ORF1ab/nsp3697S697StcCtcT11AY.270.000065
ORF1ab/nsp3697S697StcCtcT11AY.280.00189
ORF1ab/nsp3697S697FtCctTc11AY.29.10.000221
ORF1ab/nsp3697S697delTCC---11AY.30.00001
ORF1ab/nsp3697S697StcCtcT11AY.370.000316
ORF1ab/nsp3697S697FtCctTc11AY.390.000025
ORF1ab/nsp3697S697PTccCcc11AY.40.000002
ORF1ab/nsp3697S697PTccCcc11AY.4.20.000022
ORF1ab/nsp3697S697FtCctTc11AY.4.50.000107
ORF1ab/nsp3697S697delTCC---11AY.4.50.000107
ORF1ab/nsp3697S697FtCctTc11AY.420.00004
ORF1ab/nsp3697S697delTCC---11AY.430.000004
ORF1ab/nsp3697S697PTccCcc11AY.440.000006
ORF1ab/nsp3697S697ATccGcc11AY.440.000006
ORF1ab/nsp3697S697del1tCct-c11AY.440.000006
ORF1ab/nsp3697S697StcCtcT11AY.450.000122
ORF1ab/nsp3697S697StcCtcT11AY.460.000104
ORF1ab/nsp3697S697FtCctTc11AY.46.40.000165
ORF1ab/nsp3697S697FtCctTc11AY.46.60.000072
ORF1ab/nsp3697S697StcCtcT11AY.530.000288
ORF1ab/nsp3697S697FtCctTc11AY.540.000095
ORF1ab/nsp3697S697StcCtcT11AY.590.00053
ORF1ab/nsp3697S697FtCctTc11AY.590.00053
ORF1ab/nsp3697S697StcCtcT11AY.60.000041
ORF1ab/nsp3697S697delTCC---11AY.670.000464
ORF1ab/nsp3697S697ATccGcc11AY.690.000187
ORF1ab/nsp3697S697FtCctTc11AY.75.10.00018
ORF1ab/nsp3697S697StcCtcT11AY.770.001127
ORF1ab/nsp3697S697FtCctTc11AY.790.001211
ORF1ab/nsp3697S697delTCC---11AY.810.001992
ORF1ab/nsp3697S697FtCctTc11AY.820.001357
ORF1ab/nsp3697S697StcCtcA11AY.850.000427
ORF1ab/nsp3697S697StcCtcT11AY.9.10.000084
ORF1ab/nsp3697S697StcCtcT11AY.9.20.000037
ORF1ab/nsp3697S697StcCtcT11AY.920.000287
ORF1ab/nsp3697S697FtCctTc11AY.980.000079
ORF1ab/nsp3697S697StcCtcT11AY.980.000079
ORF1ab/nsp3697S697delTCC---11AY.990.001049
ORF1ab/nsp3697S697StcCtcT11AY.99.20.000092
ORF1ab/nsp3697S697FtCctTc11AY.99.20.000092
ORF1ab/nsp3697S697FtCctTc11AZ.20.000821
ORF1ab/nsp3697S697FtCctTc11B0.000128
ORF1ab/nsp3697S697StcCtcT11B0.000128
ORF1ab/nsp3697S697YtCctAc11B.10.000009
ORF1ab/nsp3697S697del1Tcc-cc11B.10.000009
ORF1ab/nsp3697S697PTccCcc11B.1.10.000018
ORF1ab/nsp3697S697StcCtcT11B.1.1.10.000327
ORF1ab/nsp3697S697delTCC---11B.1.1.1390.022727
ORF1ab/nsp3697S697delTCC---11B.1.1.1420.017544
ORF1ab/nsp3697S697StcCtcT11B.1.1.1700.001247
ORF1ab/nsp3697S697del1tCct-c11B.1.1.1940.00495
ORF1ab/nsp3697S697FtCctTc11B.1.1.2140.000055
ORF1ab/nsp3697S697StcCtcT11B.1.1.2360.006897
ORF1ab/nsp3697S697FtCctTc11B.1.1.280.000311
ORF1ab/nsp3697S697FtCctTc11B.1.1.2980.000862
ORF1ab/nsp3697S697StcCtcT11B.1.1.3010.001179
ORF1ab/nsp3697S697StcCtcT11B.1.1.3020.002075
ORF1ab/nsp3697S697delTCC---11B.1.1.3110.000358
ORF1ab/nsp3697S697StcCtcT11B.1.1.330.000421
ORF1ab/nsp3697S697StcCtcT11B.1.1.3480.000796
ORF1ab/nsp3697S697StcCtcT11B.1.1.3720.000689
ORF1ab/nsp3697S697delTCC---11B.1.1.4090.002833
ORF1ab/nsp3697S697del1tCct-c11B.1.1.70.000001
ORF1ab/nsp3697S697StcCtcT11B.1.1310.008772
ORF1ab/nsp3697S697LtCCtTG11B.1.1490.003425
ORF1ab/nsp3697S697delTCC---11B.1.1570.002985
ORF1ab/nsp3697S697delTCC---11B.1.160.70.002079
ORF1ab/nsp3697S697FtCctTc11B.1.1690.014925
ORF1ab/nsp3697S697delTCC---11B.1.1770.000013
ORF1ab/nsp3697S697delTCC---11B.1.177.160.000664
ORF1ab/nsp3697S697delTCC---11B.1.177.40.000211
ORF1ab/nsp3697S697YtCctAc11B.1.177.440.000519
ORF1ab/nsp3697S697delTCC---11B.1.177.500.004695
ORF1ab/nsp3697S697PTccCcc11B.1.177.510.004566
ORF1ab/nsp3697S697StcCtcA11B.1.177.530.002392
ORF1ab/nsp3697S697delTCC---11B.1.177.540.000606
ORF1ab/nsp3697S697delTCC---11B.1.177.570.000281
ORF1ab/nsp3697S697FtCctTc11B.1.177.570.000281
ORF1ab/nsp3697S697delTCC---11B.1.177.630.002703
ORF1ab/nsp3697S697delTCC---11B.1.177.70.000165
ORF1ab/nsp3697S697StcCtcT11B.1.177.750.001041
ORF1ab/nsp3697S697delTCC---11B.1.177.810.000189
ORF1ab/nsp3697S697PTccCcc11B.1.177.810.000189
ORF1ab/nsp3697S697FtCctTc11B.1.177.860.000183
ORF1ab/nsp3697S697StcCtcT11B.1.177.860.000183
ORF1ab/nsp3697S697delTCC---11B.1.2100.002132
ORF1ab/nsp3697S697FtCctTc11B.1.2340.000132
ORF1ab/nsp3697S697StcCtcT11B.1.2340.000132
ORF1ab/nsp3697S697FtCctTc11B.1.2430.00007
ORF1ab/nsp3697S697delTCC---11B.1.2430.00007
ORF1ab/nsp3697S697delTCC---11B.1.2580.000067
ORF1ab/nsp3697S697FtCctTc11B.1.258.30.001675
ORF1ab/nsp3697S697StcCtcT11B.1.2790.000514
ORF1ab/nsp3697S697FtCctTc11B.1.2800.007143
ORF1ab/nsp3697S697delTCC---11B.1.3190.003049
ORF1ab/nsp3697S697StcCtcT11B.1.3510.00003
ORF1ab/nsp3697S697YtCctAc11B.1.3510.00003
ORF1ab/nsp3697S697StcCtcT11B.1.360.000146
ORF1ab/nsp3697S697FtCctTc11B.1.36.170.000494
ORF1ab/nsp3697S697StcCtcA11B.1.36.290.000517
ORF1ab/nsp3697S697TTccAcc11B.1.36.70.004
ORF1ab/nsp3697S697StcCtcA11B.1.36.80.001
ORF1ab/nsp3697S697TTccAcc11B.1.362.20.004717
ORF1ab/nsp3697S697StcCtcA11B.1.3690.000285
ORF1ab/nsp3697S697FtCctTc11B.1.3910.001127
ORF1ab/nsp3697S697StcCtcT11B.1.3910.001127
ORF1ab/nsp3697S697FtCctTc11B.1.3960.000706
ORF1ab/nsp3697S697StcCtcA11B.1.4270.00005
ORF1ab/nsp3697S697FtCctTc11B.1.428.30.012821
ORF1ab/nsp3697S697FtCctTc11B.1.4290.000024
ORF1ab/nsp3697S697FtCctTc11B.1.4480.002625
ORF1ab/nsp3697S697FtCctTc11B.1.466.20.000391
ORF1ab/nsp3697S697StcCtcT11B.1.4700.001404
ORF1ab/nsp3697S697StcCtcT11B.1.4730.019231
ORF1ab/nsp3697S697FtCctTc11B.1.5300.007143
ORF1ab/nsp3697S697YtCctAc11B.1.5950.000261
ORF1ab/nsp3697S697PTccCcc11B.1.5950.000261
ORF1ab/nsp3697S697YtCctAc11B.1.5960.000087
ORF1ab/nsp3697S697FtCctTc11B.1.5960.000087
ORF1ab/nsp3697S697FtCctTc11B.1.6090.000479
ORF1ab/nsp3697S697delTCC---11B.1.617.10.000129
ORF1ab/nsp3697S697PTccCcc11B.1.617.20.000004
ORF1ab/nsp3697S697del1tCct-c11B.1.617.20.000004
ORF1ab/nsp3697S697TTccAcc11B.1.617.20.000004
ORF1ab/nsp3697S697NTCcAAc11B.1.619.10.000641
ORF1ab/nsp3697S697del1TCC-NN11B.1.6210.000089
ORF1ab/nsp3697S697YtCctAc11B.1.6230.000536
ORF1ab/nsp3697S697CtCctGc11B.1.6360.006711
ORF1ab/nsp3697S697StcCtcT11B.1.6370.000073
ORF1ab/nsp3697S697delTCC---11B.150.017544
ORF1ab/nsp3697S697StcCtcT11B.4.40.018868
ORF1ab/nsp3697S697delTCC---11B.610.005747
ORF1ab/nsp3697S697StcCtcT11C.180.002591
ORF1ab/nsp3697S697StcCtcA11C.370.000116
ORF1ab/nsp3697S697YtCctAc11P.1.10.000318
ORF1ab/nsp3697S697delTCC---11P.1.10.000318
ORF1ab/nsp3697S697YtCctAc11P.1.120.000484
ORF1ab/nsp3697S697FtCctTc11P.1.140.000048
ORF1ab/nsp3697S697FtCctTc11P.1.20.001156
ORF1ab/nsp3697S697StcCtcT11P.1.70.000319
ORF1ab/nsp3697S697FtCctTc11P.20.000187
ORF1ab/nsp3697S697StcCtcT11P.20.000187
ORF1ab/nsp3697S697PTccCcc11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.