CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 689 & Codon = ctA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3689L689LL1507LsynctTctA307560.182414784-4786

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3689L689LctTctA56307All0.000011
ORF1ab/nsp3689L689LctTctA7108B.1.1.70.000006
ORF1ab/nsp3689L689LctTctA438B.1.1770.000053
ORF1ab/nsp3689L689LctTctA326AY.40.000005
ORF1ab/nsp3689L689LctTctA1515B.1.6270.030303
ORF1ab/nsp3689L689LctTctA18B.1.1600.000031
ORF1ab/nsp3689L689LctTctA36B.10.000027
ORF1ab/nsp3689L689LctTctA16B.1.617.20.000004
ORF1ab/nsp3689L689LctTctA13AY.390.000025
ORF1ab/nsp3689L689LctTctA33B.1.177.40.000633
ORF1ab/nsp3689L689LctTctA12AY.1200.000037
ORF1ab/nsp3689L689LctTctA12AY.260.000028
ORF1ab/nsp3689L689LctTctA12AY.440.000006
ORF1ab/nsp3689L689LctTctA12B.1.20.000009
ORF1ab/nsp3689L689LctTctA11AY.46.40.000165
ORF1ab/nsp3689L689LctTctA11AY.46.50.000198
ORF1ab/nsp3689L689LctTctA11AY.520.000814
ORF1ab/nsp3689L689LctTctA11AY.60.000041
ORF1ab/nsp3689L689LctTctA11AZ.10.000867
ORF1ab/nsp3689L689LctTctA11B0.000128
ORF1ab/nsp3689L689LctTctA11B.1.10.000018
ORF1ab/nsp3689L689LctTctA11B.1.36.360.000602
ORF1ab/nsp3689L689LctTctA11B.1.4290.000024
ORF1ab/nsp3689L689LctTctA11B.1.5950.000261
ORF1ab/nsp3689L689LctTctA11B.4.40.018868
ORF1ab/nsp3689L689LctTctA11C.280.04
ORF1ab/nsp3689L689LctTctA11P.1.170.000162
ORF1ab/nsp3689L689LctTctA11P.1.70.000319

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.