CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 689 & Codon = Ttt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3689L689FL1507FnonsynCttTtt104811048114784-4786

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3689L689FCttTtt1048110481All0.002005
ORF1ab/nsp3689L689FCttTtt76817681B.1.1.70.006876
ORF1ab/nsp3689L689FCttTtt386386AY.40.000601
ORF1ab/nsp3689L689FCttTtt226226B.1.177.210.017282
ORF1ab/nsp3689L689FCttTtt158158B.1.617.20.000595
ORF1ab/nsp3689L689FCttTtt142142AY.250.000854
ORF1ab/nsp3689L689FCttTtt141141AY.1030.000875
ORF1ab/nsp3689L689FCttTtt115115AY.30.001144
ORF1ab/nsp3689L689FCttTtt9494AY.430.000416
ORF1ab/nsp3689L689FCttTtt8787AY.290.001372
ORF1ab/nsp3689L689FCttTtt8787B.1.1600.002713
ORF1ab/nsp3689L689FCttTtt6969B.1.1770.000909
ORF1ab/nsp3689L689FCttTtt6666B.1.20.000581
ORF1ab/nsp3689L689FCttTtt5555B.1.5960.004793
ORF1ab/nsp3689L689FCttTtt5353AY.440.000323
ORF1ab/nsp3689L689FCttTtt4242B.1.5610.016673
ORF1ab/nsp3689L689FCttTtt4040P.10.00063
ORF1ab/nsp3689L689FCttTtt3232B.10.000293
ORF1ab/nsp3689L689FCttTtt3232B.1.10.000581
ORF1ab/nsp3689L689FCttTtt3232B.1.3510.000951
ORF1ab/nsp3689L689FCttTtt3232B.1.5260.000752
ORF1ab/nsp3689L689FCttTtt3232C.360.029144
ORF1ab/nsp3689L689FCttTtt3131AY.1020.000822
ORF1ab/nsp3689L689FCttTtt2929B.1.177.600.006335
ORF1ab/nsp3689L689FCttTtt2727AY.330.001803
ORF1ab/nsp3689L689FCttTtt2727B.1.177.860.004953
ORF1ab/nsp3689L689FCttTtt2424AY.200.000933
ORF1ab/nsp3689L689FCttTtt2121AY.46.60.001516
ORF1ab/nsp3689L689FCttTtt2121AY.470.000653
ORF1ab/nsp3689L689FCttTtt1919AY.260.000538
ORF1ab/nsp3689L689FCttTtt1919B.1.4290.000447
ORF1ab/nsp3689L689FCttTtt1818AY.750.001008
ORF1ab/nsp3689L689FCttTtt1818AY.98.10.000872
ORF1ab/nsp3689L689FCttTtt1717AY.1200.000632
ORF1ab/nsp3689L689FCttTtt1717C.370.001973
ORF1ab/nsp3689L689FCttTtt1616AY.1000.000736
ORF1ab/nsp3689L689FCttTtt1616AY.390.000395
ORF1ab/nsp3689L689FCttTtt1616AY.99.20.001475
ORF1ab/nsp3689L689FCttTtt1414AY.1190.000494
ORF1ab/nsp3689L689FCttTtt1414AY.420.000563
ORF1ab/nsp3689L689FCttTtt1414B.1.2340.001847
ORF1ab/nsp3689L689FCttTtt1414B.1.6320.09396
ORF1ab/nsp3689L689FCttTtt1414B.4.81
ORF1ab/nsp3689L689FCttTtt1313AY.4.20.000282
ORF1ab/nsp3689L689FCttTtt1313B.1.2430.000905
ORF1ab/nsp3689L689FCttTtt1313B.1.5770.008935
ORF1ab/nsp3689L689FCttTtt1212AY.1090.008876
ORF1ab/nsp3689L689FCttTtt1212R.10.00108
ORF1ab/nsp3689L689FCttTtt1111AY.39.10.000436
ORF1ab/nsp3689L689FCttTtt1111AY.980.000869
ORF1ab/nsp3689L689FCttTtt1010B.1.360.001459
ORF1ab/nsp3689L689FCttTtt99AY.60.00037
ORF1ab/nsp3689L689FCttTtt99B.1.4270.000454
ORF1ab/nsp3689L689FCttTtt88AY.230.000558
ORF1ab/nsp3689L689FCttTtt88AY.620.003486
ORF1ab/nsp3689L689FCttTtt88B.1.1.500.005431
ORF1ab/nsp3689L689FCttTtt88B.1.1.5190.000318
ORF1ab/nsp3689L689FCttTtt88B.1.3690.002282
ORF1ab/nsp3689L689FCttTtt77B.1.1.1760.003076
ORF1ab/nsp3689L689FCttTtt77B.1.177.810.001325
ORF1ab/nsp3689L689FCttTtt77P.1.140.000335
ORF1ab/nsp3689L689FCttTtt66AY.1160.001721
ORF1ab/nsp3689L689FCttTtt66AY.370.001896
ORF1ab/nsp3689L689FCttTtt66AY.50.000124
ORF1ab/nsp3689L689FCttTtt66AY.9.20.00022
ORF1ab/nsp3689L689FCttTtt66B.1.1.2140.000333
ORF1ab/nsp3689L689FCttTtt66B.1.6090.002876
ORF1ab/nsp3689L689FCttTtt66B.1.6370.000438
ORF1ab/nsp3689L689FCttTtt66D.20.00045
ORF1ab/nsp3689L689FCttTtt66Q.10.000758
ORF1ab/nsp3689L689FCttTtt66Q.80.000989
ORF1ab/nsp3689L689FCttTtt55AY.90.000338
ORF1ab/nsp3689L689FCttTtt55B.1.177.560.003338
ORF1ab/nsp3689L689FCttTtt55B.1.177.70.000824
ORF1ab/nsp3689L689FCttTtt55B.1.3960.003529
ORF1ab/nsp3689L689FCttTtt44AY.1130.00057
ORF1ab/nsp3689L689FCttTtt44AY.410.001176
ORF1ab/nsp3689L689FCttTtt44AY.70.000784
ORF1ab/nsp3689L689FCttTtt44B.1.177.570.001124
ORF1ab/nsp3689L689FCttTtt44B.1.2580.000266
ORF1ab/nsp3689L689FCttTtt44B.1.5640.001704
ORF1ab/nsp3689L689FCttTtt33A0.001161
ORF1ab/nsp3689L689FCttTtt33AY.1170.000254
ORF1ab/nsp3689L689FCttTtt33AY.1180.000188
ORF1ab/nsp3689L689FCttTtt33AY.3.10.000256
ORF1ab/nsp3689L689FCttTtt33AY.340.000291
ORF1ab/nsp3689L689FCttTtt33AY.350.000699
ORF1ab/nsp3689L689FCttTtt33AY.360.000445
ORF1ab/nsp3689L689FCttTtt33AY.450.000365
ORF1ab/nsp3689L689FCttTtt33AY.460.000312
ORF1ab/nsp3689L689FCttTtt33AY.900.002053
ORF1ab/nsp3689L689FCttTtt33AY.930.000819
ORF1ab/nsp3689L689FCttTtt33B0.000383
ORF1ab/nsp3689L689FCttTtt33B.1.110.30.002155
ORF1ab/nsp3689L689FCttTtt33B.1.177.40.000633
ORF1ab/nsp3689L689FCttTtt33B.1.177.400.015464
ORF1ab/nsp3689L689FCttTtt33B.1.177.790.007026
ORF1ab/nsp3689L689FCttTtt33B.1.2210.000213
ORF1ab/nsp3689L689FCttTtt33B.1.36.80.003
ORF1ab/nsp3689L689FCttTtt33B.1.4260.003027
ORF1ab/nsp3689L689FCttTtt33B.1.4700.004213
ORF1ab/nsp3689L689FCttTtt33B.1.5950.000783
ORF1ab/nsp3689L689FCttTtt22A.2.5.20.003145
ORF1ab/nsp3689L689FCttTtt22AY.1060.00067
ORF1ab/nsp3689L689FCttTtt22AY.1100.000225
ORF1ab/nsp3689L689FCttTtt22AY.1210.000271
ORF1ab/nsp3689L689FCttTtt22AY.140.000176
ORF1ab/nsp3689L689FCttTtt22AY.320.001065
ORF1ab/nsp3689L689FCttTtt22AY.46.50.000397
ORF1ab/nsp3689L689FCttTtt22AY.5.40.000553
ORF1ab/nsp3689L689FCttTtt22AY.630.000774
ORF1ab/nsp3689L689FCttTtt22AY.910.001461
ORF1ab/nsp3689L689FCttTtt22B.1.1.2630.003115
ORF1ab/nsp3689L689FCttTtt22B.1.1.3180.000604
ORF1ab/nsp3689L689FCttTtt22B.1.1.4200.002012
ORF1ab/nsp3689L689FCttTtt22B.1.177.100.001756
ORF1ab/nsp3689L689FCttTtt22B.1.177.230.006472
ORF1ab/nsp3689L689FCttTtt22B.1.2060.001631
ORF1ab/nsp3689L689FCttTtt22B.1.5170.000854
ORF1ab/nsp3689L689FCttTtt22B.1.5250.000226
ORF1ab/nsp3689L689FCttTtt22B.1.619.10.001283
ORF1ab/nsp3689L689FCttTtt22C.350.001548
ORF1ab/nsp3689L689FCttTtt22C.36.30.001134
ORF1ab/nsp3689L689FCttTtt22P.1.150.000465
ORF1ab/nsp3689L689FCttTtt110.055556
ORF1ab/nsp3689L689FCttTtt11A.2.40.003367
ORF1ab/nsp3689L689FCttTtt11A.30.002096
ORF1ab/nsp3689L689FCttTtt11AM.40.003571
ORF1ab/nsp3689L689FCttTtt11AU.30.00211
ORF1ab/nsp3689L689FCttTtt11AY.10.000396
ORF1ab/nsp3689L689FCttTtt11AY.1010.00049
ORF1ab/nsp3689L689FCttTtt11AY.1040.001984
ORF1ab/nsp3689L689FCttTtt11AY.1140.000231
ORF1ab/nsp3689L689FCttTtt11AY.120.000316
ORF1ab/nsp3689L689FCttTtt11AY.120.20.001285
ORF1ab/nsp3689L689FCttTtt11AY.190.00114
ORF1ab/nsp3689L689FCttTtt11AY.240.000431
ORF1ab/nsp3689L689FCttTtt11AY.270.000065
ORF1ab/nsp3689L689FCttTtt11AY.34.10.00051
ORF1ab/nsp3689L689FCttTtt11AY.380.000499
ORF1ab/nsp3689L689FCttTtt11AY.4.2.10.000149
ORF1ab/nsp3689L689FCttTtt11AY.4.30.000842
ORF1ab/nsp3689L689FCttTtt11AY.4.40.000409
ORF1ab/nsp3689L689FCttTtt11AY.4.50.000107
ORF1ab/nsp3689L689FCttTtt11AY.400.000964
ORF1ab/nsp3689L689FCttTtt11AY.520.000814
ORF1ab/nsp3689L689FCttTtt11AY.680.000274
ORF1ab/nsp3689L689FCttTtt11AY.690.000187
ORF1ab/nsp3689L689FCttTtt11AY.700.000209
ORF1ab/nsp3689L689FCttTtt11AY.75.10.00018
ORF1ab/nsp3689L689FCttTtt11AY.790.001211
ORF1ab/nsp3689L689FCttTtt11AY.820.001357
ORF1ab/nsp3689L689FCttTtt11B.1.1.10.000327
ORF1ab/nsp3689L689FCttTtt11B.1.1.150.013514
ORF1ab/nsp3689L689FCttTtt11B.1.1.1610.003534
ORF1ab/nsp3689L689FCttTtt11B.1.1.2160.00089
ORF1ab/nsp3689L689FCttTtt11B.1.1.250.000569
ORF1ab/nsp3689L689FCttTtt11B.1.1.270.00565
ORF1ab/nsp3689L689FCttTtt11B.1.1.2770.000759
ORF1ab/nsp3689L689FCttTtt11B.1.1.3170.000412
ORF1ab/nsp3689L689FCttTtt11B.1.1.3220.008772
ORF1ab/nsp3689L689FCttTtt11B.1.1.330.000421
ORF1ab/nsp3689L689FCttTtt11B.1.1.3690.000446
ORF1ab/nsp3689L689FCttTtt11B.1.1.3770.001381
ORF1ab/nsp3689L689FCttTtt11B.1.1.3970.002252
ORF1ab/nsp3689L689FCttTtt11B.1.1.4870.005587
ORF1ab/nsp3689L689FCttTtt11B.1.1.540.003021
ORF1ab/nsp3689L689FCttTtt11B.1.1570.002985
ORF1ab/nsp3689L689FCttTtt11B.1.177.240.001295
ORF1ab/nsp3689L689FCttTtt11B.1.177.310.011494
ORF1ab/nsp3689L689FCttTtt11B.1.177.450.000381
ORF1ab/nsp3689L689FCttTtt11B.1.177.490.037037
ORF1ab/nsp3689L689FCttTtt11B.1.177.50.001242
ORF1ab/nsp3689L689FCttTtt11B.1.177.510.004566
ORF1ab/nsp3689L689FCttTtt11B.1.177.580.001332
ORF1ab/nsp3689L689FCttTtt11B.1.177.620.001192
ORF1ab/nsp3689L689FCttTtt11B.1.177.750.001041
ORF1ab/nsp3689L689FCttTtt11B.1.177.80.000752
ORF1ab/nsp3689L689FCttTtt11B.1.177.90.001332
ORF1ab/nsp3689L689FCttTtt11B.1.214.20.0006
ORF1ab/nsp3689L689FCttTtt11B.1.2150.009615
ORF1ab/nsp3689L689FCttTtt11B.1.221.40.004167
ORF1ab/nsp3689L689FCttTtt11B.1.2320.000537
ORF1ab/nsp3689L689FCttTtt11B.1.2390.001221
ORF1ab/nsp3689L689FCttTtt11B.1.258.220.002667
ORF1ab/nsp3689L689FCttTtt11B.1.3490.000715
ORF1ab/nsp3689L689FCttTtt11B.1.36.220.001208
ORF1ab/nsp3689L689FCttTtt11B.1.36.370.002778
ORF1ab/nsp3689L689FCttTtt11B.1.3750.00082
ORF1ab/nsp3689L689FCttTtt11B.1.3780.006849
ORF1ab/nsp3689L689FCttTtt11B.1.4090.000781
ORF1ab/nsp3689L689FCttTtt11B.1.4360.001029
ORF1ab/nsp3689L689FCttTtt11B.1.4560.003268
ORF1ab/nsp3689L689FCttTtt11B.1.466.20.000391
ORF1ab/nsp3689L689FCttTtt11B.1.5340.0125
ORF1ab/nsp3689L689FCttTtt11B.1.5460.003704
ORF1ab/nsp3689L689FCttTtt11B.1.5650.00081
ORF1ab/nsp3689L689FCttTtt11B.1.5680.001111
ORF1ab/nsp3689L689FCttTtt11B.1.5750.000303
ORF1ab/nsp3689L689FCttTtt11B.1.5820.000491
ORF1ab/nsp3689L689FCttTtt11B.1.5970.00463
ORF1ab/nsp3689L689FCttTtt11B.1.6120.002653
ORF1ab/nsp3689L689FCttTtt11B.1.617.10.000129
ORF1ab/nsp3689L689FCttTtt11B.1.6290.013333
ORF1ab/nsp3689L689FCttTtt11B.3.10.001658
ORF1ab/nsp3689L689FCttTtt11B.40.002208
ORF1ab/nsp3689L689FCttTtt11B.400.000364
ORF1ab/nsp3689L689FCttTtt11C.160.00106
ORF1ab/nsp3689L689FCttTtt11C.170.055556
ORF1ab/nsp3689L689FCttTtt11C.230.005814
ORF1ab/nsp3689L689FCttTtt11C.30.007634
ORF1ab/nsp3689L689FCttTtt11P.1.20.001156

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.