CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 682 | H682Y | H1500Y | nonsyn | Cat | Tat | 2613 | 2609 | 0.998469 | 4763-4765 |
ORF1ab/nsp3 | 682 | H682Y | H1500Y | nonsyn | CaT | TaC | 2613 | 4 | 0.00153081 | 4763-4765 |
ORF1ab/nsp3 | 682 | H682R | H1500R | nonsyn | cAt | cGt | 416 | 413 | 0.992788 | 4763-4765 |
ORF1ab/nsp3 | 682 | H682R | H1500R | nonsyn | CAT | AGA | 416 | 2 | 0.00480769 | 4763-4765 |
ORF1ab/nsp3 | 682 | H682R | H1500R | nonsyn | cAT | cGC | 416 | 1 | 0.00240385 | 4763-4765 |
ORF1ab/nsp3 | 682 | H682H | H1500H | syn | caT | caC | 201 | 201 | 1 | 4763-4765 |
ORF1ab/nsp3 | 682 | H682del | H1500del | del | CAT | --- | 80 | 80 | 1 | 4763-4765 |
ORF1ab/nsp3 | 682 | H682del1 | H1500del1 | del | caT | ca- | 21 | 18 | 0.857143 | 4763-4765 |
ORF1ab/nsp3 | 682 | H682del1 | H1500del1 | del | CAt | -Gt | 21 | 1 | 0.047619 | 4763-4765 |
ORF1ab/nsp3 | 682 | H682del1 | H1500del1 | del | CaT | Ta- | 21 | 1 | 0.047619 | 4763-4765 |
ORF1ab/nsp3 | 682 | H682del1 | H1500del1 | del | cAt | c-t | 21 | 1 | 0.047619 | 4763-4765 |
ORF1ab/nsp3 | 682 | H682N | H1500N | nonsyn | Cat | Aat | 17 | 15 | 0.882353 | 4763-4765 |
ORF1ab/nsp3 | 682 | H682N | H1500N | nonsyn | CaT | AaC | 17 | 2 | 0.117647 | 4763-4765 |
ORF1ab/nsp3 | 682 | H682Q | H1500Q | nonsyn | caT | caA | 16 | 10 | 0.625 | 4763-4765 |
ORF1ab/nsp3 | 682 | H682Q | H1500Q | nonsyn | caT | caG | 16 | 6 | 0.375 | 4763-4765 |
ORF1ab/nsp3 | 682 | H682L | H1500L | nonsyn | cAt | cTt | 6 | 6 | 1 | 4763-4765 |
ORF1ab/nsp3 | 682 | H682X | H1500X | nonsyn | CAT | TGA | 4 | 2 | 0.5 | 4763-4765 |
ORF1ab/nsp3 | 682 | H682X | H1500X | nonsyn | CaT | TaA | 4 | 2 | 0.5 | 4763-4765 |
ORF1ab/nsp3 | 682 | H682del2 | H1500del2 | del | cAT | c-- | 3 | 3 | 1 | 4763-4765 |
ORF1ab/nsp3 | 682 | H682K | H1500K | nonsyn | CaT | AaA | 3 | 3 | 1 | 4763-4765 |
ORF1ab/nsp3 | 682 | H682S | H1500S | nonsyn | CAT | AGC | 2 | 2 | 1 | 4763-4765 |
ORF1ab/nsp3 | 682 | H682D | H1500D | nonsyn | Cat | Gat | 2 | 2 | 1 | 4763-4765 |
ORF1ab/nsp3 | 682 | H682C | H1500C | nonsyn | CAT | TGC | 2 | 2 | 1 | 4763-4765 |
ORF1ab/nsp3 | 682 | H682P | H1500P | nonsyn | cAt | cCt | 1 | 1 | 1 | 4763-4765 |
ORF1ab/nsp3 | 682 | H682F | H1500F | nonsyn | CAt | TTt | 1 | 1 | 1 | 4763-4765 |
ORF1ab/nsp3 | 682 | H682T | H1500T | nonsyn | CAT | ACA | 1 | 1 | 1 | 4763-4765 |
ORF1ab/nsp3 | 682 | H682A | H1500A | nonsyn | CAt | GCt | 1 | 1 | 1 | 4763-4765 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2609 | 2613 | All | 0.000499 |
ORF1ab/nsp3 | 682 | H682Y | CaT | TaC | 4 | 2613 | All | 0.000001 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 596 | 596 | B.1.1.7 | 0.000534 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 413 | 416 | All | 0.000079 |
ORF1ab/nsp3 | 682 | H682R | CAT | AGA | 2 | 416 | All | 0 |
ORF1ab/nsp3 | 682 | H682R | cAT | cGC | 1 | 416 | All | 0 |
ORF1ab/nsp3 | 682 | H682H | caT | caC | 201 | 201 | All | 0.000038 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 176 | 176 | B.1.617.2 | 0.000663 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 163 | 163 | AY.34 | 0.015805 |
ORF1ab/nsp3 | 682 | H682H | caT | caC | 157 | 157 | B.1.1.7 | 0.000141 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 123 | 123 | AY.3 | 0.001223 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 118 | 118 | AY.121 | 0.015968 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 115 | 115 | AY.33 | 0.007679 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 113 | 113 | AY.103 | 0.000702 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 111 | 111 | C.38 | 0.895161 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 99 | 99 | B.1.160 | 0.003088 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 97 | 97 | AY.44 | 0.00059 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 88 | 88 | AY.25 | 0.000529 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 87 | 87 | AY.29 | 0.001372 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 80 | 80 | All | 0.000015 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 68 | 68 | B.1.243.2 | 0.985507 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 56 | 56 | B.1.1 | 0.001016 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 47 | 47 | B.1.637 | 0.003434 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 44 | 44 | AY.4 | 0.000068 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 39 | 39 | AY.20 | 0.001516 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 38 | 38 | B.1.634 | 0.130137 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 36 | 36 | AY.34 | 0.003491 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 34 | 34 | AY.61 | 0.003562 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 34 | 34 | AY.98 | 0.002686 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 32 | 32 | B.1 | 0.000293 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 28 | 28 | B.1.2 | 0.000247 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 25 | 25 | AY.120 | 0.000929 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 25 | 25 | B.1.1.7 | 0.000022 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 24 | 24 | B.1.1.7 | 0.000021 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 22 | 22 | AY.43 | 0.000097 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 22 | 22 | AY.75 | 0.001232 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 22 | 22 | B.1.617.2 | 0.000083 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 22 | 22 | C.39 | 0.415094 |
ORF1ab/nsp3 | 682 | H682del1 | caT | ca- | 18 | 21 | All | 0.000003 |
ORF1ab/nsp3 | 682 | H682del1 | CaT | Ta- | 1 | 21 | All | 0 |
ORF1ab/nsp3 | 682 | H682del1 | cAt | c-t | 1 | 21 | All | 0 |
ORF1ab/nsp3 | 682 | H682del1 | CAt | -Gt | 1 | 21 | All | 0 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 20 | 20 | B.1.2 | 0.000176 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 19 | 19 | B.1.1.189 | 0.028744 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 19 | 19 | P.1 | 0.000299 |
ORF1ab/nsp3 | 682 | H682N | Cat | Aat | 15 | 17 | All | 0.000003 |
ORF1ab/nsp3 | 682 | H682N | CaT | AaC | 2 | 17 | All | 0 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 17 | 17 | B.1.1.46 | 0.074236 |
ORF1ab/nsp3 | 682 | H682Q | caT | caA | 10 | 16 | All | 0.000002 |
ORF1ab/nsp3 | 682 | H682Q | caT | caG | 6 | 16 | All | 0.000001 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 16 | 16 | AY.4 | 0.000025 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 13 | 13 | AY.43 | 0.000058 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 12 | 12 | AY.103 | 0.000075 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 12 | 12 | AY.42 | 0.000483 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 12 | 12 | B.1.351 | 0.000357 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 11 | 11 | B.1.1.329 | 0.042308 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 10 | 10 | B.1.258 | 0.000665 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 9 | 9 | AY.16 | 0.003417 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 8 | 8 | A.2.5 | 0.003992 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 8 | 8 | AY.102 | 0.000212 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 8 | 8 | AY.99 | 0.008395 |
ORF1ab/nsp3 | 682 | H682H | caT | caC | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 7 | 7 | AY.73 | 0.004657 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 7 | 7 | B.1.1.519 | 0.000278 |
ORF1ab/nsp3 | 682 | H682L | cAt | cTt | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 6 | 6 | AY.66 | 0.006417 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 6 | 6 | B.1.1.214 | 0.000333 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 6 | 6 | B.1.160.22 | 0.040541 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 6 | 6 | B.1.427 | 0.000303 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 6 | 6 | Q.8 | 0.000989 |
ORF1ab/nsp3 | 682 | H682H | caT | caC | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 5 | 5 | AY.70 | 0.001043 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 5 | 5 | B.1.1.1 | 0.001633 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 5 | 5 | B.1.369 | 0.001426 |
ORF1ab/nsp3 | 682 | H682H | caT | caC | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp3 | 682 | H682Y | CaT | TaC | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 682 | H682X | CaT | TaA | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 682 | H682X | CAT | TGA | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 682 | H682X | CaT | TaA | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 682 | H682X | CAT | TGA | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp3 | 682 | H682H | caT | caC | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 682 | H682H | caT | caC | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 4 | 4 | AY.74 | 0.000463 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 4 | 4 | AY.86 | 0.00332 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 4 | 4 | B.1.1.240 | 0.018779 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 4 | 4 | B.1.1.448 | 0.00813 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp3 | 682 | H682H | caT | caC | 4 | 4 | B.1.161 | 0.068966 |
ORF1ab/nsp3 | 682 | H682H | caT | caC | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 682 | H682del1 | caT | ca- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp3 | 682 | H682K | CaT | AaA | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 682 | H682del2 | cAT | c-- | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 3 | 3 | AY.46.5 | 0.000595 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 3 | 3 | AY.91 | 0.002191 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp3 | 682 | H682del1 | caT | ca- | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 3 | 3 | B.1.320 | 0.003736 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp3 | 682 | H682K | CaT | AaA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 682 | H682N | CaT | AaC | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 682 | H682C | CAT | TGC | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 682 | H682R | CAT | AGA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 682 | H682S | CAT | AGC | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 682 | H682C | CAT | TGC | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 682 | H682S | CAT | AGC | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 682 | H682D | Cat | Gat | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | AU.1 | 0.002532 |
ORF1ab/nsp3 | 682 | H682L | cAt | cTt | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | AY.18 | 0.020202 |
ORF1ab/nsp3 | 682 | H682H | caT | caC | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp3 | 682 | H682N | Cat | Aat | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 682 | H682del1 | caT | ca- | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 682 | H682del1 | CaT | Ta- | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 682 | H682N | Cat | Aat | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | AY.99.1 | 0.003106 |
ORF1ab/nsp3 | 682 | H682del1 | caT | ca- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | B.1.1.229 | 0.011494 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | B.1.1.244 | 0.030769 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 682 | H682N | Cat | Aat | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp3 | 682 | H682Q | caT | caG | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 682 | H682del1 | caT | ca- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | B.1.474 | 0.003802 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 2 | 2 | B.1.619 | 0.001742 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | B.55 | 0.0059 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 682 | H682Q | caT | caA | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 682 | H682Q | caT | caA | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp3 | 682 | H682A | CAt | GCt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 682 | H682F | CAt | TTt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 682 | H682T | CAT | ACA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 682 | H682P | cAt | cCt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 682 | H682H | caT | caC | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 682 | H682Q | caT | caA | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 682 | H682L | cAt | cTt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 682 | H682del2 | cAT | c-- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 682 | H682R | cAT | cGC | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 682 | H682Q | caT | caA | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 682 | H682Q | caT | caG | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 682 | H682Q | caT | caG | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 682 | H682P | cAt | cCt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 682 | H682N | Cat | Aat | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 682 | H682N | Cat | Aat | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 682 | H682Q | caT | caG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 682 | H682Q | caT | caG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 682 | H682F | CAt | TTt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 682 | H682H | caT | caC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 682 | H682T | CAT | ACA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 682 | H682H | caT | caC | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 682 | H682del1 | caT | ca- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 682 | H682H | caT | caC | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 682 | H682Q | caT | caA | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AZ.4 | 0.003356 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 682 | H682D | Cat | Gat | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 682 | H682N | Cat | Aat | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 682 | H682L | cAt | cTt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 682 | H682K | CaT | AaA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 682 | H682A | CAt | GCt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 682 | H682D | Cat | Gat | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.1.12 | 0.007463 |
ORF1ab/nsp3 | 682 | H682del1 | caT | ca- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 682 | H682H | caT | caC | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 682 | H682L | cAt | cTt | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp3 | 682 | H682N | Cat | Aat | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.1.41 | 0.006329 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 682 | H682del2 | cAT | c-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 682 | H682L | cAt | cTt | 1 | 1 | B.1.124 | 0.007812 |
ORF1ab/nsp3 | 682 | H682del1 | cAt | c-t | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 682 | H682del1 | caT | ca- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 682 | H682N | Cat | Aat | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp3 | 682 | H682N | Cat | Aat | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp3 | 682 | H682N | Cat | Aat | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 682 | H682del1 | CAt | -Gt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 682 | H682del1 | caT | ca- | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp3 | 682 | H682Q | caT | caA | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 682 | H682Q | caT | caA | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.381 | 0.007812 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 682 | H682H | caT | caC | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 682 | H682Q | caT | caA | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 682 | H682Q | caT | caA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 682 | H682del2 | cAT | c-- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 682 | H682N | Cat | Aat | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 682 | H682del1 | caT | ca- | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 682 | H682N | Cat | Aat | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 682 | H682del1 | caT | ca- | 1 | 1 | B.52 | 0.010101 |
ORF1ab/nsp3 | 682 | H682H | caT | caC | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp3 | 682 | H682R | cAt | cGt | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp3 | 682 | H682H | caT | caC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 682 | H682del | CAT | --- | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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